XLOC_031998 (gene) - C. hemisphaerica

Overview
NameXLOC_031998
Unique NameXLOC_031998
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_179:404021..414204+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_031998 ID=XLOC_031998|Name=XLOC_031998|organism=Clytia hemisphaerica|type=gene|length=10184bp|location=Sequence derived from alignment at scaffold_179:404021..414204+ (Clytia hemisphaerica)
atttttatttcattttagcaATGAAGCTGCGTTAAAATTTATCGGTGTAA
AACCTTTTACCATCAAATGGCATCCATTTCCAATGATGTACATTGTCAAG
AGAAACTTTCCAACCTGTACAAAATGTTGTCACATTTGCATGGTCCATCA
AGTCAAcacattgctatcaataataaACTAGTATGCTCTGCATTTGAGCT
GTATCATTCTATTACTCCAacggatgacgtcatcaatcttaTGTTTGGTT
TCCTACGACAGCAAAATGAACGTTACAAAAATGGTGGATCAGCTATGGGA
ATTTTAGCGACAATTCTTATTCAAGAATACTTGAAATTTGATGTCCCCAT
TGGAACTGTAATGGATAACAACGAGTTGATTTTGAGTACTTGTGTTAGAG
AAATTCGGACACTTTCGGTCAAATGTAATATCGGACGGTTTAGTGATGTC
ACAAAAATAATTCGTCCAATCTTGATGTCTAAACTGTTGCTTACACGAGA
AGAATCTAAACATTTATGTTTGACATTTGCACGTGTTTTTACTATGGACA
ATTTCTGGAACAATAGTCACGTGATTAAACTTGAAAACGAGGCTATTTTA
AAAACGAGCCTTAATGATGGTTTAATGTTGCGTCTGGAACAATATACGAA
TTTCCCAAATGAACTCACTGATGTGAAGGTTATTCTTTATTCTGTCTCGA
TTGCCCTTGATAGTGAAGAAGTTTTGGAAGGAGGGTCAAAGTTTGATTAT
CAAGTTGAATCAAGAAGTGATTTAAAGGAAAGTTTACTAAATGGAAATGT
ATTGAGGACTTGCCGCTTAATGCATGGTTTAGTGCAACTAATTGTTTGTC
AAAAAGTGATACACCCAAGAGCTAAGAAATGGTTCAAAGACAATGCTATT
TACTGTATTGATCGAGTTGGCAAAGCTTGTATGAAAAAACTGGAGACAAT
CTGTCAGTGCATTGCTGTTAATAATCTTTCAGAAACTGACCTTTCATCTT
ATTTGGGACACATTTCTTTAGCAAAGCGTGTTAATCTGATTGAAAAGAAC
TTTCTTAGGTTGGAAAATGTGAACGTACCGCAAATAAAGACAGTTATTTT
ATGTGCTGAAGACGAAATTCGCTTGAACGCTTTAGATATTTGTTATGAAC
AAACCTTGACAGCCTTGGATACGGTTTCTAAAACGGAAAACGTTTTATAC
GGAGGAGGATGCTCCATAACTCGACTCCTTATGAAGATGGTGAAGGAGCA
CGGCACCATGACACATTTTCGTGTTTATGTTACATCGTTATTAAAGCTGT
GTCAAGCTGTATCAAGAACAGATACtctccatcattgcattgacttaACC
TTCCATCATCATTGGATAACTGGTTCTCCAACCTGTTGTTGTGGAATTGT
CAAGAAAAGCTCTACGATGGAGTTTGTCAATTTTCTTGAGCTTAACAATA
ATTCTTATCTTACAAATTACAAACCTAGTGATGTACAAGAAGATTTTTAT
GGACGTGAAGCAGATGTTTTTGAGTCAGAAGAAATGTTCATTCATATCAT
CTCTTCTGCTTTTCAATTAGCTAATATGGTTTTAAGAATCGGTGCAAAAG
TGGTTTCTAAGCCTCCCACTACCTAAttagtattttctttttcttttttt
catattcaagtAAATCTCTTGTACTGTACTTGATTGTGAGTAGCTTTCCT
AGTATTATTTGCTTTCATCTTCCAAAAAAGAGCTTTAATGTTAATCGTTT
CCAAGGCCAACCCTAAAGATAAAATGATAATTTCATTTGTTGTTTTGAAG
TTTCTTCTCGACATAAATGCTTGACCTCCACTACATTGAACTATATCGTT
CTTTAAAGGTTTGTAGAATATAAAAACTTACTGCAAATATTTAGCAAGAA
AAtgagaaatttgttttgtttggaGTTTCTTACAGTTATCTTTATCGTTA
ACTCAAaatctaaacgtttttttaataagaacatttttgaagccttcgga
tgttcttatctTTTTGATTTAGCCTAAAAaggttcttaacatgttcttat
tttcgccattttttgagtatttttgtccattttctgaagaaatcgggtgt
tttagagtccgtgatattcttaacattttggccatcgaagccttatgttc
ttatatagtttgttcttataaaaaaacgtgtaccacaCCTTTCTTGTCTT
AGGTTTATTATCTTTACGTGACTTAAGAAACATTATATTTCAACAGACTT
AGTCTGATACATTATATTTCAacagtttttcagaaaaatattaccTTTGT
GATTATGAGGTGTCGatgaaatgccattttttaataTCTACCTGCTCgtg
aaattttatgaaagatTTTGGTCGAAAGTAGTTCATGCTCAATAATGTTA
GGTTGTTTTCTCGTTACCGTGAAAGCTGTTGAAGTTGAGCTCAAATTCTT
TCAAACTGAATTCTTTTCTAGTAGGGTAGTTAGTGCTTACTTTTTTGCAA
ATATCGTCTGTACTTGCTTATTCCTCCCGGGtccctaatagccgcccccc
cccccgctaattaatttttcgaaaattttcccccccggacatttttttcc
cccccccccccccccgctaattaatttttcgaaaattttcccccccggac
atttttttcccccccccccccccccgctaattaatttttcgaaaattttc
ccccccggacatttttttcccccccccccccccccgctaattaatttttc
gaaaattttcccccccggacatttttttcccccccccccccccccgctaa
ttaatttttcgaaaattttcccccccggacatttttttcccccccccccc
cccccgctaattaatttttcgaaaattttcccccccggacatttttttcc
cccccccccccccccgctaattaatttttcgaaaattttcccccccggac
atttttttcccccccccccccccccgctaattaatttttcgaaaattttc
ccccccggacatttttttcccccccccccccccccgctaattaatttttc
gaaaattttcccccccggacatttttttcccccccccccccccccgctaa
ttaatttttcgaaaattttcccccccggacatttttttcccccccccccc
cccccgctaattaatttttcgaaaattttcccccccggacatttttttcc
cccccccccccccccgctaattaatttttcgaaaattttcccccccggac
atttttttcccccccccccccccccgctaattaatttttcgaaaattttc
ccccccggacatttttttcccccccccccccccccgctaattaatttttc
gaaaattttcccccccggacatttttttcccccccccccccccccgctaa
ttaatttttcgaaaattttcccccccggacatttttttcccccccccccc
cccccgctaattaatttttcgaaaattttcccccccggacatttttttcc
cccccccccccccccgctaattaatttttcgaaaattttcccccccggac
atttttttcccccccccccccccccgctaattaatttttcgaaaattttc
ccccccggacatttttttcccccccccccccccccgctaattaatttttc
gaaaattttcccccccggacatttttttcccccccccccccccccgctta
ttaagttttgagattttttccaacccccctgcttattccaacccccttgg
ctattaggtacccgagagtaaaaaTTAGAATTTGAACATTCAAAATCTAA
CAATCTCATTTTTAAGATTTGCTAGCAAGCTTTGTACGAAAATCAATCGA
TGATGCTAATCTGAAGGCTACTCAGAAAATAtgagattaaaatatattgt
taTCATTGCAAGTCGTTAAGATGATGTAATCTATTGTCAAGTTTTGAATT
TGATAATCGATACTTTACCATCCCAACACCATATGACATTTTTATaagct
ttttttttatttccacaAATACTCTATCAAAAAGAATAATATTGTACTGA
AAAAAAGATCAACACGAATTTTGAGTAACCTTTTCTAGATTGTGACGGAC
AGAGACTTGTTTTTTTGACGATTTGACTATTTCTAATTCGTTTTAGGTCA
AACCTTCATTCAGATGACTCGATACACGAAATCTTTTTTGCACAATTTTC
AcataatgatattttttgtcCTTCTTTATTAGGGTTGATCTTACATAACG
TTTCAGAAGTAGCAACAAATCTTTTCAAGGTACAGTATGAtccattacac
gtttttttataagaacatctacaatttttgaagcctttggatgttcttat
tttcaccattttgtgaccatttttaaaatttttttgagtccacaaagcct
taaaatgttcttaacaagtCTTTTGtgcttatatagtttgttcccataaa
aaaaacgtgtaatgacCGTTACTTTAGCACTTATCGCATTTGGGACAAGG
GTCCTTTCATATTCCAATATTCTGATATTTTTGTTGGCTTCAGTTTTTAA
GAGGcaagaaaataaattgtttattcttggtgTGTGTAAAGTCTAGAGTC
TAAGACagaaagtacacgtttttttataagaacaaactatataggaacat
aaggcttcgatggccaatatgttaagaacaagttaagaacattttaagac
tttgaggactctaaaatacccaatttcttagaaaaacggacaaaagtact
caaaaaatggcgaaaataagagcatgttaagaataatttttagacttgaa
acccaaaaagttaagaacatctcaaggcttcaaaatttttagatgctCTT
AtacaaaaacgtgtattcagAGTCATCTTGATGTGTTGATAGGGATTAGT
AATCTGTGTGACTATCCAGTATTTTATCACGAGGGACATACtactcaaaa
attgttttttaattcgGAAATTGATTTGTTTGAATTATCAAAAATACCTT
GACAATGTAAAGGTAAATAGGATTATACTCATTAAACCAAATTTCTTCAA
AACTCTCAGTAGAGTATTAATCAATTTCTATGTCTTTATCATTTTAAGAG
AGTCATGTAGTTTATGTTGTTTTAATTTGATTCATTATAGATTTCGTCGT
GTGAATGGGAAAAGTTTCATTTCGCAAAACAGCTTCTCAGCAAAACTATC
TGTACTTTTTGCAAGAATACCAACAACAGAACGTATTGTCTCTACGAACA
AGAACTCAGGTAAACACATCATGATTTTATGTtacgtctttttataagaa
caaactatataagaataagGCTTCataaccaaaatgttaagaaggATTTG
TAAACTCTAAAACagccgatttcttagaaaactAGACAAAAATACCCAGA
AAATTGAATGCTTAGAATAAGAACTTGgtaagaacacttttaggcttagg
tttaaaactcaaaaaagttaagagcattcgaaggcttcaaatatttttga
tgttcttattaaaaaaacgtgtacagtatTATGTAAAAGTAAACTTTTTC
TCCTTCCCATAAAATATTACCATGTATTAAAACTGCTTTCATTAGTTTGC
TACTGGTGCTGATtcttttgtatgtatttttgaattttttaaggaCCTAA
CCCTCGCAATCCTTGGTACAGTCCTAGACTAGAATTATAGGCTTTTTTta
ctaaaaagttttgtttttaaataagagtgatatcaattttaatttacaag
ctttttcgcattgaattgacacggatgtggagcaagactggtcagaaaga
ggaaaagaaaaacatttttgcttatGGTATCAACAGATATCAAcccaata
cacgctttttcttttataagagtgtactttggatgagggtcaagtattct
taagaaagtgccaaaattgagggtgaaatgttcttaacgtattcttactt
ttttgagACTTGCCTTTTTCACAAACATGAGattgatcaatttgagagtt
ttggacttttgagtgaaaatttgggttaaaattacatttcttcctcaaag
cttcaatttatctctaacaaaggaagcagtttgactgtattcttatcaaa
ttctgtgaaattcacctcagaaaaaaagcgtaaaaaagaaaagtcctgat
atgaaacatgtgtctgatatactgatatgaaacggggacACTTTAGTAAA
TATGAAACCTTTAGGAAATTTTGTAGTAAAGAAGTTACATTGAATTGGAA
TGTTACTGCTGCGTGTTTAGTCAACGATTAGCCATCTGTCAACGATTATA
CAAACCCCGGGAgggaggggggtacttaggcaaaaatggatgatgggtat
gtgcggacggtaagggtcggttttttcacctttcaaagtctctctaaggg
tcggaaaaatcaggaTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNACCCTAGAgagtattcttagggtatttttatgattt
ggccaattttcatcctgatattcttatagaagatattcttataaaaaaag
cgtgtataataATAAGTAGActctgtcctgatatgaaacatgtgtctgat
atgagacGGGAACACTTTTGTAAATATGAAACAGGTGAAACCTTTAAGAA
ATTTTGTAGTAAAGAAGTTACATTGAATTGGAATGTTACTGCTGCGTGTT
TAGTCTCTGGTACATGAATTTGTTCAGGTTTTCTAGCTATTGAACTGATA
TTTTGGAAGACATTAAAAACGTAATCAGCATAGCTTTGAATGGATTTTGA
AAGCCTTTAGTTGTTACAACAATATTAGAGACCACTTTCGAAAGTCTACG
ACTGCTACAAACCCCCATTTGTCAACAATTATACAAACCAAGCCCCATTC
AAAAGCTCATCCCTTGAAGTGCATATATTTtgatattggaagtttatcgt
ggcttggatcacaagatttacgtttggctacgtttcgagagattcttttC
CCATAATCAGGCAAGGTGGAGGGTGTTTTCTTCTCTATTATGGGAGAaaa
atctctcgaaacgtagccaaccTTTAAATCTTGTAATCCAAGctacgata
aacttccaatatcaAAATATATAAGCTTCAAGGGACGAGCTTTTGAATGG
GGTTTGGTTTGTATAATCGTTGACGAATGGGGGTTTAAATCACCGGATCG
ATAAACTCAAACTTATTTAGCTTACATTTTGATAAAGGGGTCATCTTCTA
TTACACTGGAGAGTGTAActaatttttctctaaaaattaaGGCACAATAA
GAGCAATTTAAAagccgagcctcaacaaaaatttactagTTCTTATGAAG
AAAGGTCTGTATAATACACCCCCTTcccacagacccggtaggactttttc
agccagtgtggataaaaacaacagaaagaaactcgatattttttatagct
GGGGACTTCAATTCATTATGTTTTCAAGTAGGTagaaaattcaatgggga
tggCAAAAATAGTAaattattttgcagtgaggattggttaatttgattat
tttcagtggggcaaaaattggaggatgattttccaccggggacgatattt
ttagggaaggggtcccagtgggtctgtgagcaGGTGGTGTTATAATATTA
TATtgctcttcttcattttcaggtGACTCAAGGTGCCCAAAAAGTAAGCA
AGGAAGGAAAAGAGTCACGTCAAGTCCTTGTGAGTATAGTCCTTTGCTAC
TTTGAGTACATTATTgagcaaagaaaaaaatcaattatttaaTCTTGAGC
GctgaatatttctttttatacTTCTCGCTGTGGTAACTGTTCCCGCGCAA
CAAGATGGTACTGTTCCATTGAATAAAATCATTCTGAGAATAAATTGGCC
AAACATTTTACTACCGATAAGGATCTTTTCTTTTAGAAGgcttataagaa
caagctagaaaaattgaattttcagaaaactTGACTTCTAAAGGCTTCCT
CGACAGTACAGAAACAAATTTACCCTTATTTCACTTAGATTGATTTCTGA
AACGACAGGATCAACTGAATAGAAAAGTTTGAAGCATATTGCTCCCTAGT
TCAAGAGTTCTTTCAAGATAGCTTTGTTATACCATCTCGTGTGTTTTTGC
TTGTAACACGTACGAGAAAAGAGTCTTGTGGCGAATGTACTAGTGTACTA
TTGATATATTATTTTCACCACGCACAGTTTcttaataaaaaatttattat
tagTTATTATTACAAGGTTACTCTGATCAACGAAATGAAAATCGCTGTAC
ccttttttaataactttttcccTCTTTTCTTAACACGAAATAGATGTTTC
CCCATATCTTTCTCTCTGTAAAAAAATGacgtattttttttctttctttc
tcatttcTTAAAGCCAAGCCTTCGGAACAAGATAAGCTTTGCTTAAAAGA
AGTAAAGAAGGAAGACAACGTAAATATTGAAGCAGTTTGACTTGACATTA
AAACCAATTCATTCAACGTCTCAAGAGAGTCAAAATGCCGAACAAATGCT
TATCGTTGCTACCAGTTTCGGCCGCTTTCGTTTTGTTAGCAGCAGCTGTA
TCAAGCTACCTCTTGGGATTGCTGCACAAAGGTACTTTAGAGTATGTCCC
ATACCCAAGTGATTTAGGTTTACAACAACCTGAGCTTGGTATATTTTCAA
CTGGGATTGCGTTTAGTGGTTCAATCACTTTCGCTGTCATCCTGTTACGT
TTTATCCAAGTTAACACGTTTTATCCAATGGTGTGTTATAAAGCCAATTA
CATATCTTTCTTATCTGGTATGTTGATGCTGATTGGTTTATACATGGTAC
CAGCTTTCCCGTACGATACACATGCTTTCCTTCACTACATCGGTGCcgga
attttcttctttttcatgattCTCTTCATGATTACCCAAGCAAGGATCAC
CCACAAGCATCCGTATAATCACACTAAATGCTTAGCGAGTTTCCGAATCC
TTCTCTGTGTTTTCGCCTGTGCAACACCGGTTACATTTGTCTGCGGACGT
CTACTTGCTCCTAAAGAGGAACGTTATTATTATATCCCACAAGGCTGTGA
ATGGTTCCAATGTTTACTTTACTTAATCTACATGTGCACCTTCGCATGGG
ATTTTGGTCGTATCCATCTACGTCTAAACAGCTACGAGGTTTGCCCGCGA
AGTCCAGATACTCGAAAGTTGACCCGCAGGCCGTTAGATGCTCATAGTAC
AATGTAAAAGACGAAATGGAAGATTCATACATGCGGTGAATTGTTTGGAA
TTTATACTGCTTCCCAAgtcttggtcttgtctctgtTCGCAAATATTGTA
AAAGACAAGACTCGCAGCATAATGGATTTTAATGGAAAATTTGGTGTAAT
TCACACTTTTATTATGGATGATATCGTTaaacgattttgattttttttta
agaaaatggaaatttcaaaGAACGTTCCAAAGCAATGGACAGTGCATCGT
GTGCCCATCTAGGAAACCATTGAATTTTGAATCGTTGGCAAACGAACGTA
TTTAAAACACCCTGTCTCAACGGTTGCACGGGGCTATGACAGTATGTGAT
ATGACAgcacaataattttttttgatcggAACTTAAACACCTCTTGTGCT
ATTTTAGGACGTCCTTCTGTTGTTCAGATGGCTATTTTCATCCTTTTGCA
GGTTTTTCCATCTCCAAAAGTCTTGATAATAAGTCCCTCGCTTAATTCCA
ATTTGTACCGACCCCCTGTTCGTTTATTAGACACCTAGAGACCTGATGAA
AGTGCCTTAATTTCCTATGTATAAGCGCGTTTATAAGTATGCCTTGCTCA
CACTTTATTCAAGTATTTATAGTTATATTATAAAATTTAGGTATTTTCTT
TTTAGAGggttttaatatctttttagaggCATTAATAGCATTTACTTAAC
ATATTTATCTTACTCTTCATATTTATCGGCGTGGATATTTTATTCGGTTT
TCGAATGATCGATAAAAACATCATTCTCTCTTAT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00050526TCONS_00050526Clytia hemisphaericatranscript
TCONS_00050527TCONS_00050527Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00050527-proteinTCONS_00050527-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_179supercontigscaffold_179:404021..414204 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.01	2.18	0.97	0.58	0.44	0.26	0.88	1.1	1.13	1.36	1.26	1.03	5.35	4.52	1.21	1.44	9.5	13	6.71	9.07	26.25	24.64	5.72	9.68	11.22	15.95	9.97	6.75	7.8	10.67