TCONS_00050498 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050498
Unique NameTCONS_00050498
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2205

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050498 ID=TCONS_00050498|Name=TCONS_00050498|organism=Clytia hemisphaerica|type=transcript|length=2205bp
NNTTTCGATAAATGGCTGCAAGCTGGTCTTGTTTCTCCTACACATACTAA
ACGTTCAAGTACAAACATTATTTTCTCGTCATTGGAAGAGCTAGATGATA
TTGTACCACTTGATCAAACCTGCGATCAAAATGTTGAAAGACAAATTCTT
CAAGTCATTGAGGATAGCTCGTTATTCAATCACTCCCACATCGACGCAGC
AGTAGGgaatctGCAACAATTCAGGACTAGACATTTCGGATACGAACTTC
GAGACACGGCACGTCAGGAGAGAGTGACAATCGATGGAACGAAATACGAT
TTTGATGatgtttggaaaattttggaggaaaagaatttcgcgaaattcga
agaaattttCCGCCAAAAACCGAACATCGTCAACTCGTTGCGTGATGATG
GTGGTTCGACACTTCTCATGTATGCTGTTTATGAAAAACGTTTCGACGTT
TTCGTTCACTTGATGAAATTTCCTCAAGATTTTTCACTCGTGGACAATTA
TGGTGACAACATTCTTCATTTTGTTGGTGTGAATGGAAAAGTTCGTCATT
TGGAAATGTTTGATCAACAAACAATCGAAATGTTGATCAATGGAAGAGAC
AGATGGAACGAAACACCGTTGCATTTTGCAGCACGTCGCAACAATCATGA
CAACATCAGATGGTTGTTGGCCAAAGGAGCGGATCCTAAATTGAAAAACA
ATCGACGCCCTGATGAATATTATGAATGTGATGGTGTTACCGAAGAAATC
TTTCGATCGTTTCGTTCGTCTtgATTGATTGATTGTTTCCATTGTTTGTT
TCATCGTTTCCAATGGCGTCATCGATTCCGAATTATTTCCACattcccAA
CATGACAGCACGCATGAGAAGTTACACCCGTCATTTTTGACGCCGTTTCT
ACGATTACGTTATTTATTCATTCCATCTCTACATTTCTGTTTGCGTTCAA
ACATTACTTCCTtcattttggcttgtttttagaTGTTTTTTTACCACTTC
ACTAACTTGACTATTATTTTACGTCAACCGTCACTAGCTTCGGTGGCGTG
TCTATTCTTACGCCCTTACGTTTCCATCTTATAGATTACCTTAGTTGAAT
ATGAATAAGAGTACAGTGCTAAAACTCGTGTCACtatagcgcaccgcgct
gaatctaataatagattttatttttgacataatcattactctcgatgtgt
ttatacgagttccaatcccatcaacatTTGCGCTAATCTCTTTTGCTCGT
TAATTgtatcatttgacaaaagatatataacagcttgcacgtatctttaa
ttgagccgcgttgaattgtgggattgcaacttgtacaaatatcaaaaaaa
gtgaaaagtaataattatgacgtatgcgttgTGGAGCGCTATTGGTTTCG
ATTGGATCATTTCCCTTGTAAATATCCGACTCTTTTCGCTAACTCGGTGA
AATTTTGTTCAGTCTGTCAGGGAAAAAAATTTAGATACTATTTTTAGTGG
AAAACCCTGTCAACAGTGACCTCGGTGAAAACGTGaatttttctaacctt
ggctCTCAGGAATATTTTGTACGGTTTAGGTTTGACATCTCCACGGGTGA
AACAATCAAGGTTAAAATACCTAAGTTTTTACGGTATTTTTCGGAAGAGA
CTCATTGGCAGTAAATATTGGATGGTTTTAATTAGAAATTGCTCTTCATT
TCAAGCCGATGAATGTTTCTTGGTatatatacacccctgtctcacagtcc
aggtggaatttttttcctaagtggggataaaaattcctattgaaatccta
atggggatagaaattctattgttctaaagttaaaaatcccaatggggatg
gttttggagtacaatttttaaagatggaatttcgagtgaggatgaaatca
aagtcaatttcccagcggggctgaaattcaaggataTTTTCCcgccgggg
acgaaatttttgcttaattttccagtggggctggggtcccagttgGTCTG
TGACACGGGTGTATATAAATACGACAAATATTTCTATTATATTAAACTta
gataagaatattttatcCTATAGAATTAATTATAAAAACTTTGTAATCaa
ttgttgttttttaattgtaactcttattaatttatttttatttataaaaa
attacaaatcgaCCTTAAAAGAAACTAAGCATTATGAGACAAAAGAAAAA
GCCTG
Run BLAST on NCBI

protein sequence of TCONS_00050498-protein

>TCONS_00050498-protein ID=TCONS_00050498-protein|Name=TCONS_00050498-protein|organism=Clytia hemisphaerica|type=polypeptide|length=257bp
XFDKWLQAGLVSPTHTKRSSTNIIFSSLEELDDIVPLDQTCDQNVERQIL
QVIEDSSLFNHSHIDAAVGNLQQFRTRHFGYELRDTARQERVTIDGTKYD
FDDVWKILEEKNFAKFEEIFRQKPNIVNSLRDDGGSTLLMYAVYEKRFDV
FVHLMKFPQDFSLVDNYGDNILHFVGVNGKVRHLEMFDQQTIEMLINGRD
RWNETPLHFAARRNNHDNIRWLLAKGADPKLKNNRRPDEYYECDGVTEEI
FRSFRSS
Run BLAST on NCBI

transcript from alignment at scaffold_178:6235..14791+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050498 ID=TCONS_00050498|Name=TCONS_00050498|organism=Clytia hemisphaerica|type=transcript|length=8557bp|location=Sequence derived from alignment at scaffold_178:6235..14791+ (Clytia hemisphaerica)
NNTTTCGATAAATGGCTGCAAGCTGGTCTTGTTTCTCCTACACATACTAA
ACGTTCAAGTACAAACATTATTTTCTCGTCATTGGAAGAGCTAGATGATA
TTGTACCACTTGATCAAACCTGCGATCAAAATGTTGAAAGACAAATTCTT
CAAGTCATTGAGGATAGCTCGTTATTCAATCACTCCCACATCGACGCAGC
AGTAGGGTAAGTAGAACTTATTGTATATCGGTACTTTACATACAACATTC
ATATTAGCCCTTATTACTTTTTACAACGTACTGAAATGTTTCATCTTAGT
ATATTCTCGAAAGTTTATTACTTACAACATAACCTACACTAAGTGCGTAA
TGTAATATCATTAGTACTAAAAGAATCGAAGATACAGAGCACATGTCCTC
ATGGTAAGCTTCATCCGATAACATTCATCTAAATAATTATCTTGTGATAC
CAACGCAACGGAagcagatttttaaaaaatgctttggttttaaagaaagt
tatttttttttttttttttcaggaatctGCAACAATTCAGGACTAGGTAT
AtttccaatgaaataattttcaaactgtCTTAAGGGCCATGTCTTTTTTG
CTAAGTATTTAAGGAAATGTAACTAATTCAAACCCTACCTCTAGTCTTTG
AAGATTTTAGTTACCCGTTCAAAGCTTGTTAGATAACAAACCCTACAAAG
GCTCCTTTACCTTTTGAGAAGAGTATCGTTTATTTGCTAAAATATCGTAN
GGTAACGAAAGGCTCCTTTACCTTTTGATTGGCGGGAAGAGTGTCGTTTA
TTCACTCAAGCAtcgtcatttttttctataGCACAGAGACTAAACCTTAC
CTGTCTTCATGAAAAAGACTGTTTAGATGTCGGTTAGTTTTGGACGTACT
GTATGGAGGGAGCCTTTTACACTCCGGGACTGAATTTTGATTGCAGCCCT
GTTATTGAAGGGAACGTGCTGGCCTTTTCGGATCGGGTTTGCATTGTAAA
TGGTGACGTATGTGCATGTAGGCGGTGGATAAATTAGCAACTAGGTTTTT
TAATACCAGAATTAGGCAAGCCAAACTGTGCCCTGGCTGGTTGTACATCC
TCGCCAAATTGTCCCAAAATTAGAGAAGAAAGGAGGTAAGCATAATCTTA
AGCAAACTCTTACCCGTCACAAAGCCATGTCTGTCGAGGGTAAAGGGAGG
CAGGAAGAAAATATTGGAACAGTAGGAAAATACTTTTGGAAAATGTCTGC
TTGGTCGAATTCCCTTTTCATCCTTCCTTGTCTTGTAGACATTTCGGATA
CGAACTTCGAGACACGGCACGTCAGGAGAGAGTGACAATCGATGGAACGA
AATACGATTTTGATGGtaagtttatttttttggaaatgagcAACCTTGAT
TTTCTGTTATGAACGGTTACGTTGGTTTCCCATTTGTTGCATTGTCAAAA
ATGTTGTGTGTATATTTTAATGATGTACTTTTACTTTCTTGGGAAACGTT
CATATTCTCTTATTATTAGGTTCAAAATAAGCGGGGGACTATTTCGAAca
aaataagggaccttctccTTGAAAgctatgaatattttttttaaataatt
aaagGTAGGTCCTTATGAAGTCAGGggtattggaaaattttcaaaaaata
aacaagtggtgggggggcgtttatttggaaccatTGAGTAATCCTTCTTA
TCTTATTCTTAAGTTTAATGAACACTTCAGTCTAATGAGCACAATCAGAA
TGCTTTTTGGAAGAGTAAAAAATACTTTCATACTTTCTGAGACCGGCTAT
AAAGGGCTCCATgtcacttgttcgacagtacgTTTGTTTGACAGCCCAAT
TATTCAACattcttcaatttttagatgaaattgtcgaacaactgagcTGT
GGAACATGTTGAAATCTCAGTTATTCATCAGCCAGTTGTTCGAAAATTTA
ATTGATCGACAGTAACTTTAttccctttcctatctttcaTTCACGCACTT
TTATGATTTGATTAATTGAGAAGATCGGATAATGGATGGGAAATAATATT
TCTCGAAATCAATAAGGAGAACGCGGGTTGCAAATACTGACAACCGGAAT
AGTCAAGCAACTGGTTCGTCGAAATAAATCATTGACAATTTGTGCAAAAA
CTCGGTTAAATGTTTTATGTAAATGTCGAATAAGTGAGGTTTCTGACAAC
CCAAAGCAACTGAGCGTTCACTTGTTTGGCAGTGCAGTTGTTAGACAAAT
CAAATGTAGTCAAAAACACGTATTCTCGAGCAAGTCGGATTTCTCCCTAT
AAAGAGCCGATGATCGGTTAAATAGatactaccttattggaactaatttt
cgcgggttttaattttagcgtttttcgcggtttttcgtcaaaatcacgaa
aatttgaacccgcgaaaaattttgagagtcgaaaaccgcgaaaattaatt
cccgcgaaatacaattttttccaattttatcgaaaaatttggaaaatccc
taggaaaatgaaagaaatttgtccaaaaaaaggcaaaaccgctaaaatta
aaacccgcgaaaattactgaatggaaaaaaccgcgaaaattcaaacccgc
gaaatgcaattttttggaatttttttttcgaccgcgaaaattagttcccg
cgaaaattagttccaataaggtacactATGAATAGATAACAAAGGTAGTG
AAAATCTCTACCCTTACACTAAACAAGAGCTGATTGAAAGGCTGAATTTG
GCACGATCATTCCTCTTTTCTCAATTCCTGTTTGAGCCCAACAGTTGGGG
TCTCAGCATGTCGGGTATGTGAAAATTTGGTGAAGTGAGGGTCATAAAAA
CTTTGATCTAAGAATTGGAAATACAATCTCTCATCAAAGGATCGTTTTTC
GAACTTAGGCACAAACATACCCGTCAACCTTACATCCCCTAGAGATTATT
TTCccaaaagtttttgatatttcgTAATTTTGGTCCCCATCGCGCAGAAT
TGACAGTACGTTTTTTGTAATGCATCAAAACCCAGGGGTTTAACGTCAgg
ggtttgacgtcactttttaaCGTCACAAAAAGTCGTTTTCAAATTTCTCT
TTACATTCTTCAAATGTCTTCTAGAAGGCtaactttgtttttttcgaAAC
CCTGTAACTTCCctctttcaaatgatatcaaaaTAGTTTTATTCTAGAGT
TTTAATCGAAAAGCCTAGGGTATTTTACAAAGACAATCTTTTCTAGCTGA
AAACCTAAGACTTATCAATTTTGTAAGTgctttaaaagaaagaaaaaccc
CTCCTGCAATTTTCGAGTACTCcaagaaaaaactttattctttctttttt
ccaaaccgggtactaggtttgcgaggtgaaaataagattagagagagaca
aaaatttgcgtttttgggacccttagagagacttttcccaAAATCTTTGt
cgattttcactcgatttttgtccaaatttttggaAACCACGACCCTTAGA
GAAAAATTCgattacagagactcaatttgctttttaatgctttttgtacc
cctttgagagactttcaagGGTGTGAAAAATGGACCCTTTATGACTGGGG
GGTTTGCGAGgcttgaaaatgctctaaaaatagcattcttagcttgagta
gcaaaattctatgatggtgatattcttagcattattcctaattttttggc
cattttcacaatggacattcttataaagtgtattcttataaaaagggtGT
ATATTGATTTGGTTTtgtcacatttttttttttttggcattttcatataa
tttttaaaaacaaaagggaGAAATTTCAAGCGATATCATATAGTCATACT
GGCTCAAGCAAACGTTATAGAAATTCAAGAATGCAAAGTTCGGggcaaaa
attactgtagggtaAAACCgcggtaggatttcctaccaaagaaatcacgt
gacaataAGCAATTtaactggtttgagagatgcgaaatagcgtttgccgc
ctactttttttgatctcgcgctccgaaaacaattaaaatgctagagcCTA
TCCAtaggcacgaaatttaaaaaagtcaaatttttgcttcactttttttt
gctggagaaagcttaatcctttaagtgccacggtcatttttttctaagtt
ttttaaagaaaatcgctatttcaaactttaaaggcttatatctccggatc
tagaaggagttagaagcttgtttatagtccgttggatagcttagagtctc
ctctttcttttaggcgcctTCGGCCTTAGGCGGACTtgactgaatgatag
aaaggtacCGAGCGGTAAAGcttcaaactaattcgctggaggacaaAATC
AAGTTAATCAGGgtcaaatttggaggttcttggatcactcgttgaccaaa
aatggtcaaaaacggtcaaaatcttaaaaaaagtggatttttgtcaagtg
tttgcatttttttgactatctagcttaaaatctcgctgaaaagactcact
tttgattttctttttgcttggcCATGACGCCCAATCCGATTCCTACGAGT
TaaaccaaaaatgacgatttctaattCAAACTTGACattcctacatagcc
catgtttgatatatacgacatgggcacttaaagggttaaagttgcctatc
tagtaAAAACCAATTGGTATCAAATGACAAATGTAAGATTTTGTAACCTT
ATAAATCTTGAATTTTCAAGACATtttgtcttttatgttttaaagtaatt
taaaaagaagaaaatcttttacgATATTGGGAGGTCTCTAGAAAGCATCA
AATGAAATCGACAGGAGTGTTGTCAATTTCATTCTCAAGGgagttttttt
tatcatataaAGAGAAATATCTGTTGAGTATTTTCGTTCATTTCTTATTT
AATTTGGTGGGGCTTGTTGAGTGGTTGTTTGTGCACAAATAGTACGTTAA
TATTTTTGGAATGTTGAATAATATTTCATCAGGTAAAATAATTTACTATA
CAGTAGAAGGagctttttctgaaaaagttcTGTAGACGTGTTGAAAATAT
TAGTTTGctctgaaaaaagatttttcaaagtccTTTATTCGGGAGAAACA
GAACCTTTGATCGACTAAGATATTCATCTTTTAAAGTTTACTTTTTACCT
AAGTTTATCGGGATATTGGGCCCTTTTTGCAGACTAAAACTAAACGTAAT
TTTTTAACCATTGATCAGCAAAcgaatcaaaattttcttttcaatttttt
caaattttaaaattttgagtatctttctcgttttttttcccttaaaactt
tttaagtCCGAAAGAATAATGACggaattattaaaattttcggttttacc
ttataaaaaaagctattTCTTTACTGAGCGAAAAGTTcttaactaaattt
tttttctctatcaATTTGGAAACCATTTTCccaatctttgtgcaaaattt
tgactttgaacGATTTTCAGTTCTCTAGATATCGAAGTTCAGTTTAAATT
TTTTGCAGTCatgaataaaaatgatttattgcttggcaaaaagttttcat
tcaaaaatgaaaattttttcgctatcaattcggaaatatttttctcgttc
tgtttacaaaatttcagctccaaaataattttagttccTGAGATATCGag
attcattttttgttgaacttttttatttactccgtgaaaagtttgaattt
cttctttttttcttcagatgtttggaaaattttggaggaaaagaatttcg
cgaaattcgaagaaattttCCGCCAAAAACCGAACATCGTCAACTCGTTG
CGTGATGATGGTGGTTCGACACTTCTCATGTATGCTGTTTATGAAAAACG
TTTCGACGTTTTCGTTCACTTGATGAAATTTCCTCAAGATTTTTCACTCG
TGGACAATTATGGTGACAACATTCTTCATTTTGTTGGTGTGAATGGAAAA
GTTCGTCATTTGGAAATGTTTGATCAACAAACAATCGAAATGTTGATCAA
TGGAAGAGACAGATGGAACGAAACACCGTTGCATTTTGCAGCACGTCGCA
ACAATCATGACAACATCAGATGGTTGTTGGCCAAAGGAGCGGATCCTAAA
TTGAAAAACAATCGACGCCCTGATGAATATTATGAATGTGATGGTGTTAC
CGAAGAAATCTTTCGATCGTTTCGTTCGTCTtggtaagaaaaatatcaac
tttttcatgattttttttaggattgaattattttttggaaataatttttt
tctattattgcGAGAAGTgttgaaacttttctttttttattaaatagAAG
TGAAAATTTATTAAGAAagtctttaaatttttcattcggataaatttttc
cttttcggAGTTCGAATGAATGAAACGGATGAATTGATTTCGATATTTTG
ATTAAGATTTTTCATCGCATTGAAGCAGACATTTTTTGGAGACGGTTGGA
ATTTGCAAATAGATGGTTGTCTGTGAAATATTTTCTCAGGTTGCTATGAG
TTTATTTTTTGGCGGAGAAGGAAATTGtcgttttttgttattttttagta
CCCTTCTTATGATATTGTTTCAAATGCTTTTCATTCGATTAATTATTTTT
CAGATTGATTGATTGTTTCCATTGTTTGTTTCATCGTTTCCAATGGCGTC
ATCGATTCCGAATTATTTCCACGTAAGTATATTTAATCATTTTTCCGGCT
GATGTGAAATTGCCTAAGGGCTGAAATTTTCTAAATACcggaattttttg
caaaaagtgaATCCATTCAAAAATCTTAGAAAGGAGGGCTTggttagcct
gtaccaaactcttcttggTAAACTGAAAAAAGCAAGGAAAATTCAGTATG
TTTGGACTTTTATGTGACTGAGACGAATCCACGCAAATCTCGGCTGTAAA
GTGTTGAACTATTTTCAGAATTAAGCTTCTTCAATTAGTCGAATAAATGC
AATTGTTTCTTTCTGTATTAAAGATAGCgtataaagcctaaaatacctca
atttgaCCTTGAAGTAAGAAAATGGGTTACACTTCAAAGATTTGCTAGTT
CTTATAGAAAGACTCCGTATTCcgtgattttcaaacttttccaaCACATC
AGATTTTCAGCATTCTCATTAGCCgctttaaaaaaacatttattcgAGTC
AGCAAGTTTTATTTTGCAATTaatctccaaatttttatttttagattccc
AACATGACAGCACGCATGAGAAGTTACACCCGTCATTTTTGACGCCGTTT
CTACGATTACGTTATTTATTCATTCCATCTCTACATTTCTGTTTGCGTTC
AAACATTACTTCCTtcattttggcttgtttttagaTGTTTTTTTACCACT
TCACTAACTTGACTATTATTTTACGTCAACCGTCACTAGCTTCGGTGGCG
TGTCTATTCTTACGCCCTTACGTTTCCATCTTATAGATTACCTTAGTTGA
ATATGAATAAGAGTACAGTGCTAAAACTCGTGTCACtatagcgcaccgcg
ctgaatctaataatagattttatttttgacataatcattactctcgatgt
gtttatacgagttccaatcccatcaacatTTGCGCTAATCTCTTTTGCTC
GTTAATTgtatcatttgacaaaagatatataacagcttgcacgtatcttt
aattgagccgcgttgaattgtgggattgcaacttgtacaaatatcaaaaa
aagtgaaaagtaataattatgacgtatgcgttgTGGAGCGCTATTGGTTT
CGATTGGATCATTTCCCTTGTAAATATCCGACTCTTTTCGCTAACTCGGT
GAAATTTTGTTCAGTCTGTCAGGGAAAAAAATTTAGATACTATTTTTAGT
GGAAAACCCTGTCAACAGTGACCTCGGTGAAAACGTGaatttttctaacc
ttggctCTCAGGAATATTTTGTACGGTTTAGGTTTGACATCTCCACGGGT
GAAACAATCAAGGTTAAAATACCTAAGTTTTTACGGTATTTTTCGGAAGA
GACTCATTGGCAGTAAATATTGGATGGTTTTAATTAGAAATTGCTCTTCA
TTTCAAGCCGATGAATGTTTCTTGGTatatatacacccctgtctcacagt
ccaggtggaatttttttcctaagtggggataaaaattcctattgaaatcc
taatggggatagaaattctattgttctaaagttaaaaatcccaatgggga
tggttttggagtacaatttttaaagatggaatttcgagtgaggatgaaat
caaagtcaatttcccagcggggctgaaattcaaggataTTTTCCcgccgg
ggacgaaatttttgcttaattttccagtggggctggggtcccagttgGTC
TGTGACACGGGTGTATATAAATACGACAAATATTTCTATTATATTAAACT
tagataagaatattttatcCTATAGAATTAATTATAAAAACTTTGTAATC
aattgttgttttttaattgtaactcttattaatttatttttatttataaa
aaattacaaatcgaCCTTAAAAGAAACTAAGCATTATGAGACAAAAGAAA
AAGCCTG

Coding sequence (CDS) from alignment at scaffold_178:6235..14791+

>TCONS_00050498 ID=TCONS_00050498|Name=TCONS_00050498|organism=Clytia hemisphaerica|type=CDS|length=3870bp|location=Sequence derived from alignment at scaffold_178:6235..14791+ (Clytia hemisphaerica)
NNTTTCGATAAATGGCTGCAAGCTGGTCTTGTTTCTCCTACACATACTAA
ACGTTCAAGTACAAACATTATTTTCTCGTCATTGGAAGAGCTAGATGATA
TTGTACCACTTGATCAAACCTGCGATCAAAATGTTGAAAGACAAATTCTT
CAAGTCATTGAGGATAGCTCGTTATTCAATCACTCCCACATCGACGCAGC
AGTAGGgaatctGCAACAATTCAGGACTAGACATTTCGGATACGAACTTC
GAGACACGGCACGTCAGGAGAGAGTGACAATCGATGGAACGAAATACGAT
TTTGATGatgtttggaaaattttggaggaaaagaatttcgcgaaattcga
agaaattttCCGCCAAAAACCGAACATCGTCAACTCGTTGCGTGATGATG
GTGGTTCGACACTTCTCATGTATGCTGTTTATGAAAAACGTTTCGACGTT
TTCGTTCACTTGATGAAATTTCCTCAAGATTTTTCACTCGTGGACAATTA
TGGTGACAACATTCTTCATTTTGTTGGTGTGAATGGAAAAGTTCGTCATT
TGGAAATGTTTGATCAACAAACAATCGAAATGTTGATCAATGGAAGAGAC
AGATGGAACGAAACACCGTTGCATTTTGCAGCACGTCGCAACAATCATGA
CAACATCAGATGGTTGTTGGCCAAAGGAGCGGATCCTAAATTGAAAAACA
ATCGACGCCCTGATGAATATTATGAATGTGATGGTGTTACCGAAGAAATC
TTTCGATCGTTTCGTTCGTCTtgANNTTTCGATAAATGGCTGCAAGCTGG
TCTTGTTTCTCCTACACATACTAAACGTTCAAGTACAAACATTATTTTCT
CGTCATTGGAAGAGCTAGATGATATTGTACCACTTGATCAAACCTGCGAT
CAAAATGTTGAAAGACAAATTCTTCAAGTCATTGAGGATAGCTCGTTATT
CAATCACTCCCACATCGACGCAGCAGTAGGgaatctGCAACAATTCAGGA
CTAGACATTTCGGATACGAACTTCGAGACACGGCACGTCAGGAGAGAGTG
ACAATCGATGGAACGAAATACGATTTTGATGatgtttggaaaattttgga
ggaaaagaatttcgcgaaattcgaagaaattttCCGCCAAAAACCGAACA
TCGTCAACTCGTTGCGTGATGATGGTGGTTCGACACTTCTCATGTATGCT
GTTTATGAAAAACGTTTCGACGTTTTCGTTCACTTGATGAAATTTCCTCA
AGATTTTTCACTCGTGGACAATTATGGTGACAACATTCTTCATTTTGTTG
GTGTGAATGGAAAAGTTCGTCATTTGGAAATGTTTGATCAACAAACAATC
GAAATGTTGATCAATGGAAGAGACAGATGGAACGAAACACCGTTGCATTT
TGCAGCACGTCGCAACAATCATGACAACATCAGATGGTTGTTGGCCAAAG
GAGCGGATCCTAAATTGAAAAACAATCGACGCCCTGATGAATATTATGAA
TGTGATGGTGTTACCGAAGAAATCTTTCGATCGTTTCGTTCGTCTtgANN
TTTCGATAAATGGCTGCAAGCTGGTCTTGTTTCTCCTACACATACTAAAC
GTTCAAGTACAAACATTATTTTCTCGTCATTGGAAGAGCTAGATGATATT
GTACCACTTGATCAAACCTGCGATCAAAATGTTGAAAGACAAATTCTTCA
AGTCATTGAGGATAGCTCGTTATTCAATCACTCCCACATCGACGCAGCAG
TAGGgaatctGCAACAATTCAGGACTAGACATTTCGGATACGAACTTCGA
GACACGGCACGTCAGGAGAGAGTGACAATCGATGGAACGAAATACGATTT
TGATGatgtttggaaaattttggaggaaaagaatttcgcgaaattcgaag
aaattttCCGCCAAAAACCGAACATCGTCAACTCGTTGCGTGATGATGGT
GGTTCGACACTTCTCATGTATGCTGTTTATGAAAAACGTTTCGACGTTTT
CGTTCACTTGATGAAATTTCCTCAAGATTTTTCACTCGTGGACAATTATG
GTGACAACATTCTTCATTTTGTTGGTGTGAATGGAAAAGTTCGTCATTTG
GAAATGTTTGATCAACAAACAATCGAAATGTTGATCAATGGAAGAGACAG
ATGGAACGAAACACCGTTGCATTTTGCAGCACGTCGCAACAATCATGACA
ACATCAGATGGTTGTTGGCCAAAGGAGCGGATCCTAAATTGAAAAACAAT
CGACGCCCTGATGAATATTATGAATGTGATGGTGTTACCGAAGAAATCTT
TCGATCGTTTCGTTCGTCTtgANNTTTCGATAAATGGCTGCAAGCTGGTC
TTGTTTCTCCTACACATACTAAACGTTCAAGTACAAACATTATTTTCTCG
TCATTGGAAGAGCTAGATGATATTGTACCACTTGATCAAACCTGCGATCA
AAATGTTGAAAGACAAATTCTTCAAGTCATTGAGGATAGCTCGTTATTCA
ATCACTCCCACATCGACGCAGCAGTAGGgaatctGCAACAATTCAGGACT
AGACATTTCGGATACGAACTTCGAGACACGGCACGTCAGGAGAGAGTGAC
AATCGATGGAACGAAATACGATTTTGATGatgtttggaaaattttggagg
aaaagaatttcgcgaaattcgaagaaattttCCGCCAAAAACCGAACATC
GTCAACTCGTTGCGTGATGATGGTGGTTCGACACTTCTCATGTATGCTGT
TTATGAAAAACGTTTCGACGTTTTCGTTCACTTGATGAAATTTCCTCAAG
ATTTTTCACTCGTGGACAATTATGGTGACAACATTCTTCATTTTGTTGGT
GTGAATGGAAAAGTTCGTCATTTGGAAATGTTTGATCAACAAACAATCGA
AATGTTGATCAATGGAAGAGACAGATGGAACGAAACACCGTTGCATTTTG
CAGCACGTCGCAACAATCATGACAACATCAGATGGTTGTTGGCCAAAGGA
GCGGATCCTAAATTGAAAAACAATCGACGCCCTGATGAATATTATGAATG
TGATGGTGTTACCGAAGAAATCTTTCGATCGTTTCGTTCGTCTtgANNTT
TCGATAAATGGCTGCAAGCTGGTCTTGTTTCTCCTACACATACTAAACGT
TCAAGTACAAACATTATTTTCTCGTCATTGGAAGAGCTAGATGATATTGT
ACCACTTGATCAAACCTGCGATCAAAATGTTGAAAGACAAATTCTTCAAG
TCATTGAGGATAGCTCGTTATTCAATCACTCCCACATCGACGCAGCAGTA
GGgaatctGCAACAATTCAGGACTAGACATTTCGGATACGAACTTCGAGA
CACGGCACGTCAGGAGAGAGTGACAATCGATGGAACGAAATACGATTTTG
ATGatgtttggaaaattttggaggaaaagaatttcgcgaaattcgaagaa
attttCCGCCAAAAACCGAACATCGTCAACTCGTTGCGTGATGATGGTGG
TTCGACACTTCTCATGTATGCTGTTTATGAAAAACGTTTCGACGTTTTCG
TTCACTTGATGAAATTTCCTCAAGATTTTTCACTCGTGGACAATTATGGT
GACAACATTCTTCATTTTGTTGGTGTGAATGGAAAAGTTCGTCATTTGGA
AATGTTTGATCAACAAACAATCGAAATGTTGATCAATGGAAGAGACAGAT
GGAACGAAACACCGTTGCATTTTGCAGCACGTCGCAACAATCATGACAAC
ATCAGATGGTTGTTGGCCAAAGGAGCGGATCCTAAATTGAAAAACAATCG
ACGCCCTGATGAATATTATGAATGTGATGGTGTTACCGAAGAAATCTTTC
GATCGTTTCGTTCGTCTtgA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031979XLOC_031979Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050498-proteinTCONS_00050498-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050498-exon-scaffold_178-1491911889:6235..6440TCONS_00050498-exon-scaffold_178-1491911889:6235..6440Clytia hemisphaericaexon
TCONS_00050498-exon-scaffold_178-1510915933:6235..6440TCONS_00050498-exon-scaffold_178-1510915933:6235..6440Clytia hemisphaericaexon
TCONS_00050498-exon-scaffold_178-1575043694:6235..6440TCONS_00050498-exon-scaffold_178-1575043694:6235..6440Clytia hemisphaericaexon
TCONS_00050498-exon-scaffold_178-1491911889:6757..6780TCONS_00050498-exon-scaffold_178-1491911889:6757..6780Clytia hemisphaericaexon
TCONS_00050498-exon-scaffold_178-1510915933:6757..6780TCONS_00050498-exon-scaffold_178-1510915933:6757..6780Clytia hemisphaericaexon
TCONS_00050498-exon-scaffold_178-1575043694:6757..6780TCONS_00050498-exon-scaffold_178-1575043694:6757..6780Clytia hemisphaericaexon
TCONS_00050498-exon-scaffold_178-1491911889:7523..7599TCONS_00050498-exon-scaffold_178-1491911889:7523..7599Clytia hemisphaericaexon
TCONS_00050498-exon-scaffold_178-1510915933:7523..7599TCONS_00050498-exon-scaffold_178-1510915933:7523..7599Clytia hemisphaericaexon
TCONS_00050498-exon-scaffold_178-1575043694:7523..7599TCONS_00050498-exon-scaffold_178-1575043694:7523..7599Clytia hemisphaericaexon
TCONS_00050498-exon-scaffold_178-1491911889:11952..12417TCONS_00050498-exon-scaffold_178-1491911889:11952..12417Clytia hemisphaericaexon
TCONS_00050498-exon-scaffold_178-1510915933:11952..12417TCONS_00050498-exon-scaffold_178-1510915933:11952..12417Clytia hemisphaericaexon
TCONS_00050498-exon-scaffold_178-1575043694:11952..12417TCONS_00050498-exon-scaffold_178-1575043694:11952..12417Clytia hemisphaericaexon
TCONS_00050498-exon-scaffold_178-1491911889:12838..12906TCONS_00050498-exon-scaffold_178-1491911889:12838..12906Clytia hemisphaericaexon
TCONS_00050498-exon-scaffold_178-1510915933:12838..12906TCONS_00050498-exon-scaffold_178-1510915933:12838..12906Clytia hemisphaericaexon
TCONS_00050498-exon-scaffold_178-1575043694:12838..12906TCONS_00050498-exon-scaffold_178-1575043694:12838..12906Clytia hemisphaericaexon
TCONS_00050498-exon-scaffold_178-1491911889:13429..14791TCONS_00050498-exon-scaffold_178-1491911889:13429..14791Clytia hemisphaericaexon
TCONS_00050498-exon-scaffold_178-1510915933:13429..14791TCONS_00050498-exon-scaffold_178-1510915933:13429..14791Clytia hemisphaericaexon
TCONS_00050498-exon-scaffold_178-1575043694:13429..14791TCONS_00050498-exon-scaffold_178-1575043694:13429..14791Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_178supercontigscaffold_178:6235..14791 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.297441	0.0343541	0.268481	0.161606	1.61444	1.65149	1.38919	1.89101	2.2948	1.30618	1.39271	1.56133	1.46087	1.70678	0.138765	0.277329	0.0527298	0.174493	0.265983	0.640818	0.727333	0.723374	0	0	4.69912	4.70976	1.49312	2.02201	1.03333	1.43554
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR020683Ankyrin_rpt-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050498 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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