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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050495 ID=TCONS_00050495|Name=TCONS_00050495|organism=Clytia hemisphaerica|type=transcript|length=892bp
AGAAGAATGTAATGCGAAAAGATCCATTGCTTTTTTCTCGAAGAAGACGG
AGAAGAAGAAGATGTGCAAGTCCTGCTAAACAACCTTGCTATGTGGAAAC
CAATGGCTGTGGATCGggcattttcacaaaaattccaTACACTTACAAGA
AATTGTTGACTCCTGCATGTAACAAGCATGATGTTTGTTTCCGTTGTGGC
CAGAAATATAGTTGGTCACGAAAAGCTTGTGATGAAACCTTCAGGAAAGA
CATGAACCGATTATGCAGATGCAAGTTGACTGGATTGAAAGTTGTACTCC
AACCACACTGTTATAAAAGAGCGTTGGAGATGTATGGCATTGTACGATTA
TTTGGGAAGCCTTACTTTAGAGATCCTGCTGAAGATTGGTGCAAAAGTTG
TGTGGTCCCATATGGTAGCCCAAATTATACTGTTTGAGGATATATGTTCC
ATCAAGCATGACTTGTTTTAATGAGGgattgtttttttaatatatttttt
actAGAGTAAAAAAACATATGTAActatctttaataattttcctactGGT
TTGAGCAGATTTTCACTCCATTTCAACTCCATCTATATCACACCATCGTT
CTCCTAGATACTCCAAAACTCTGTTGAAAGCGTTTTTACATTATTTCAGT
GATCCCATTCATCAGCTATGACAGTTTTTTAAAAGTCGTTTAGCACAATC
CGAAATGACTTTTTTGGTGTTGTTCGAGTTTAATaggtatatgtaatcac
atgataacgagtgcaattcgaatataattgcacgagtaaTTTTCGAAtcg
tacgagttattatgtgattacgagctaatcgcacaatggctttcactact
ttttcccagttaggaaagtaaattacagaaattacactgaga Run BLAST on NCBI protein sequence of TCONS_00050495-protein >TCONS_00050495-protein ID=TCONS_00050495-protein|Name=TCONS_00050495-protein|organism=Clytia hemisphaerica|type=polypeptide|length=144bp
KNVMRKDPLLFSRRRRRRRRCASPAKQPCYVETNGCGSGIFTKIPYTYKK
LLTPACNKHDVCFRCGQKYSWSRKACDETFRKDMNRLCRCKLTGLKVVLQ
PHCYKRALEMYGIVRLFGKPYFRDPAEDWCKSCVVPYGSPNYTV Run BLAST on NCBI transcript from alignment at scaffold_176:3050..4637+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050495 ID=TCONS_00050495|Name=TCONS_00050495|organism=Clytia hemisphaerica|type=transcript|length=1588bp|location=Sequence derived from alignment at scaffold_176:3050..4637+ (Clytia hemisphaerica)
AGAAGAATGTAATGCGAAAAGATCCATTGCTTTTTTCTCGAAGAAGACGG
AGAAGAAGAAGATGTGCAAGTCCTGCTAAACAACGTAAGGATTACCAAAC
ATTTCCCCGACAGATTTTTCTCTGCCCGACAATTCGCTGACGAACGTTTC
TCCAAACGGACTGAACTGAATGAACTTAAAATGAACGTAAAACGAGTCCC
TACTTTTCCCTGACGGATGCTTCCCTGAATTTCGTTCTTCGGGAATCATC
GGAAGAGAATCTTCATTGTTTATACTATGAAGTGATACAATCGCTCTCAT
ATTGTCTTGGAAAATCAACGGATCCTGGCGNATTGTCTtttgaccagcca
ccagaaccgttggaaaatcaacggatcctggcaagactcgaactcacaac
catgccattcgcaGGAATTTGTtctaccattgagctacgggtccGAACCT
AAGGACTCAATTGCTTAATTCTTTATACTAGTATTCATATTCAATTATTC
GTTTTGCGTTTAGCTTGCTATGTGGAAACCAATGGCTGTGGATCGggcat
tttcacaaaaattccaTACACTTACAAGAAATTGTTGACTCCTGCATGTA
ACAAGCATGATGTTTGTTTCCGTTGTGTAAGTTGATGAAACATCCATTGC
AAAAATACTTGCGCTTCCAAGCTCAATATCGCTCTtccaaaagcaaaaaa
aggaCTAATTTTGAAAAGCGGGAACTTTAAAAAGCTTACGAGTGGTTAAT
TGTTCAGCCTCGTGGgttatgaattttttcttttaaagaaatttcCTTGT
GCCAGACCCGGTAGAAGCGGGAAGACTGGGGAGACTCGATTCTTAATTTT
CTAAACTAAATGTTAAAGAATACActtctttaattttttgcagGGCCAGA
AATATAGTTGGTCACGAAAAGCTTGTGATGAAACCTTCAGGAAAGACATG
AACCGATTATGCAGATGCAAGTTGACTGGATTGAAAGTTGTACTCCAACC
ACACTGTTATAAAAGAGCGTTGGAGATGTATGGCATTGTACGATTATTTG
GGAAGCCTTACTTTAGAGATCCTGCTGAAGATTGGTGCAAAAGTTGTGTG
GTCCCATATGGTAGCCCAAATTATACTGTTTGAGGATATATGTTCCATCA
AGCATGACTTGTTTTAATGAGGgattgtttttttaatatattttttactA
GAGTAAAAAAACATATGTAActatctttaataattttcctactGGTTTGA
GCAGATTTTCACTCCATTTCAACTCCATCTATATCACACCATCGTTCTCC
TAGATACTCCAAAACTCTGTTGAAAGCGTTTTTACATTATTTCAGTGATC
CCATTCATCAGCTATGACAGTTTTTTAAAAGTCGTTTAGCACAATCCGAA
ATGACTTTTTTGGTGTTGTTCGAGTTTAATaggtatatgtaatcacatga
taacgagtgcaattcgaatataattgcacgagtaaTTTTCGAAtcgtacg
agttattatgtgattacgagctaatcgcacaatggctttcactacttttt
cccagttaggaaagtaaattacagaaattacactgaga Coding sequence (CDS) from alignment at scaffold_176:3050..4637+ >TCONS_00050495 ID=TCONS_00050495|Name=TCONS_00050495|organism=Clytia hemisphaerica|type=CDS|length=1305bp|location=Sequence derived from alignment at scaffold_176:3050..4637+ (Clytia hemisphaerica)
AAGAATGTAATGCGAAAAGATCCATTGCTTTTTTCTCGAAGAAGACGGAG
AAGAAGAAGATGTGCAAGTCCTGCTAAACAACCTTGCTATGTGGAAACCA
ATGGCTGTGGATCGggcattttcacaaaaattccaTACACTTACAAGAAA
TTGTTGACTCCTGCATGTAACAAGCATGATGTTTGTTTCCGTTGTGGCCA
GAAATATAGTTGGTCACGAAAAGCTTGTGATGAAACCTTCAGGAAAGACA
TGAACCGATTATGCAGATGCAAGTTGACTGGATTGAAAGTTGTACTCCAA
CCACACTGTTATAAAAGAGCGTTGGAGATGTATGGCATTGTACGATTATT
TGGGAAGCCTTACTTTAGAGATCCTGCTGAAGATTGGTGCAAAAGTTGTG
TGGTCCCATATGGTAGCCCAAATTATACTGTTTGAAAGAATGTAATGCGA
AAAGATCCATTGCTTTTTTCTCGAAGAAGACGGAGAAGAAGAAGATGTGC
AAGTCCTGCTAAACAACCTTGCTATGTGGAAACCAATGGCTGTGGATCGg
gcattttcacaaaaattccaTACACTTACAAGAAATTGTTGACTCCTGCA
TGTAACAAGCATGATGTTTGTTTCCGTTGTGGCCAGAAATATAGTTGGTC
ACGAAAAGCTTGTGATGAAACCTTCAGGAAAGACATGAACCGATTATGCA
GATGCAAGTTGACTGGATTGAAAGTTGTACTCCAACCACACTGTTATAAA
AGAGCGTTGGAGATGTATGGCATTGTACGATTATTTGGGAAGCCTTACTT
TAGAGATCCTGCTGAAGATTGGTGCAAAAGTTGTGTGGTCCCATATGGTA
GCCCAAATTATACTGTTTGAAAGAATGTAATGCGAAAAGATCCATTGCTT
TTTTCTCGAAGAAGACGGAGAAGAAGAAGATGTGCAAGTCCTGCTAAACA
ACCTTGCTATGTGGAAACCAATGGCTGTGGATCGggcattttcacaaaaa
ttccaTACACTTACAAGAAATTGTTGACTCCTGCATGTAACAAGCATGAT
GTTTGTTTCCGTTGTGGCCAGAAATATAGTTGGTCACGAAAAGCTTGTGA
TGAAACCTTCAGGAAAGACATGAACCGATTATGCAGATGCAAGTTGACTG
GATTGAAAGTTGTACTCCAACCACACTGTTATAAAAGAGCGTTGGAGATG
TATGGCATTGTACGATTATTTGGGAAGCCTTACTTTAGAGATCCTGCTGA
AGATTGGTGCAAAAGTTGTGTGGTCCCATATGGTAGCCCAAATTATACTG
TTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050495-exon-scaffold_176-1491911889:3050..3133 | TCONS_00050495-exon-scaffold_176-1491911889:3050..3133 | Clytia hemisphaerica | exon |
| TCONS_00050495-exon-scaffold_176-1510915933:3050..3133 | TCONS_00050495-exon-scaffold_176-1510915933:3050..3133 | Clytia hemisphaerica | exon |
| TCONS_00050495-exon-scaffold_176-1575043694:3050..3133 | TCONS_00050495-exon-scaffold_176-1575043694:3050..3133 | Clytia hemisphaerica | exon |
| TCONS_00050495-exon-scaffold_176-1491911889:3563..3675 | TCONS_00050495-exon-scaffold_176-1491911889:3563..3675 | Clytia hemisphaerica | exon |
| TCONS_00050495-exon-scaffold_176-1510915933:3563..3675 | TCONS_00050495-exon-scaffold_176-1510915933:3563..3675 | Clytia hemisphaerica | exon |
| TCONS_00050495-exon-scaffold_176-1575043694:3563..3675 | TCONS_00050495-exon-scaffold_176-1575043694:3563..3675 | Clytia hemisphaerica | exon |
| TCONS_00050495-exon-scaffold_176-1491911889:3943..4637 | TCONS_00050495-exon-scaffold_176-1491911889:3943..4637 | Clytia hemisphaerica | exon |
| TCONS_00050495-exon-scaffold_176-1510915933:3943..4637 | TCONS_00050495-exon-scaffold_176-1510915933:3943..4637 | Clytia hemisphaerica | exon |
| TCONS_00050495-exon-scaffold_176-1575043694:3943..4637 | TCONS_00050495-exon-scaffold_176-1575043694:3943..4637 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_176 | supercontig | scaffold_176:3050..4637 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004623 | phospholipase A2 activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0050482 | arachidonic acid secretion |
| GO:0006644 | phospholipid metabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0050482 |
arachidonic acid secretion |
| biological_process |
GO:0006644 |
phospholipid metabolic process |
| molecular_function |
GO:0004623 |
phospholipase A2 activity |
Blast
The following BLAST results are available for this feature:
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