TCONS_00050494 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050494
Unique NameTCONS_00050494
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length169

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050494 ID=TCONS_00050494|Name=TCONS_00050494|organism=Clytia hemisphaerica|type=transcript|length=169bp
TTTTCATTTAGCACTTCACTCCTCAAGAGCCATGATGAAGAACTTCCTAC
TGGTTTTACTTTTGGTGACACTTTCAATTTATCCATCTGCTTCTAAACAT
CCGGAAGAAACCAACGTTGAGAATGCAAGTGGCAATGATTCCATGCAGGA
gagagaacaattaaaaagg
Run BLAST on NCBI

transcript from alignment at scaffold_176:2447..2771+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050494 ID=TCONS_00050494|Name=TCONS_00050494|organism=Clytia hemisphaerica|type=transcript|length=325bp|location=Sequence derived from alignment at scaffold_176:2447..2771+ (Clytia hemisphaerica)
TTTTCATTTAGCACTTCACTCCTCAAGAGCCATGATGAAGGTAGGCATGG
TGATTTTATAGTTTATATATACAATCTATCAACCGTTCTCATCTACTTAA
TATACAGAAAGATTTTCCTTGTATAGTTATAATTTGACTATCCTACCAAA
ATGTTTTTAGTAACTCTCTAGTATTCTTACTATTTATCTAACTCAGAACT
TCCTACTGGTTTTACTTTTGGTGACACTTTCAATTTATCCATCTGCTTCT
AAACATCCGGAAGAAACCAACGTTGAGAATGCAAGTGGCAATGATTCCAT
GCAGGAgagagaacaattaaaaagg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031975XLOC_031975Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050494-exon-scaffold_176-1491911889:2447..2486TCONS_00050494-exon-scaffold_176-1491911889:2447..2486Clytia hemisphaericaexon
TCONS_00050494-exon-scaffold_176-1510915933:2447..2486TCONS_00050494-exon-scaffold_176-1510915933:2447..2486Clytia hemisphaericaexon
TCONS_00050494-exon-scaffold_176-1575043694:2447..2486TCONS_00050494-exon-scaffold_176-1575043694:2447..2486Clytia hemisphaericaexon
TCONS_00050494-exon-scaffold_176-1491911889:2643..2771TCONS_00050494-exon-scaffold_176-1491911889:2643..2771Clytia hemisphaericaexon
TCONS_00050494-exon-scaffold_176-1510915933:2643..2771TCONS_00050494-exon-scaffold_176-1510915933:2643..2771Clytia hemisphaericaexon
TCONS_00050494-exon-scaffold_176-1575043694:2643..2771TCONS_00050494-exon-scaffold_176-1575043694:2643..2771Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_176supercontigscaffold_176:2447..2771 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050494 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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