TCONS_00050492 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050492
Unique NameTCONS_00050492
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length473

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050492 ID=TCONS_00050492|Name=TCONS_00050492|organism=Clytia hemisphaerica|type=transcript|length=473bp
TCTTGGTTCAATTGTCTGTAATGGTTGATTGTGATTTTGTTGTGATCTgt
attttctttaatttgatcATTGCAGCTATAATAAGCCCTAATGAGACTTT
GACTATATATCTTGTACTATATGCCATAAAAATATACTTATTGATTGCAT
GAAAACTTCTCATATCTCATATTTTTCATTCCATTGATtcttccaatctt
gttccaggTTTTCCAACATTTTCCGATGATGCTTCATCTTTTAAGACCAT
CGCCACAATACAATCTAACATTCCGGAAAGTAGTCGAACTTCTTCAACCT
CTCTGGGAAGAAGAAGGTTCAAATGCAAAAATGCGACAGAAGAAATTGTA
TGCAATTTTCCTCAAATATTTGAGGCTGGTGCATGGTAAgttttctattt
tcaacattactCTTCGCTATGTTGTTAATGTTGAGCAATAAATAATGGAA
TGTGGTCTGTGACTGAAAAATTT
Run BLAST on NCBI

transcript from alignment at scaffold_175:11132..11604+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050492 ID=TCONS_00050492|Name=TCONS_00050492|organism=Clytia hemisphaerica|type=transcript|length=473bp|location=Sequence derived from alignment at scaffold_175:11132..11604+ (Clytia hemisphaerica)
TCTTGGTTCAATTGTCTGTAATGGTTGATTGTGATTTTGTTGTGATCTgt
attttctttaatttgatcATTGCAGCTATAATAAGCCCTAATGAGACTTT
GACTATATATCTTGTACTATATGCCATAAAAATATACTTATTGATTGCAT
GAAAACTTCTCATATCTCATATTTTTCATTCCATTGATtcttccaatctt
gttccaggTTTTCCAACATTTTCCGATGATGCTTCATCTTTTAAGACCAT
CGCCACAATACAATCTAACATTCCGGAAAGTAGTCGAACTTCTTCAACCT
CTCTGGGAAGAAGAAGGTTCAAATGCAAAAATGCGACAGAAGAAATTGTA
TGCAATTTTCCTCAAATATTTGAGGCTGGTGCATGGTAAgttttctattt
tcaacattactCTTCGCTATGTTGTTAATGTTGAGCAATAAATAATGGAA
TGTGGTCTGTGACTGAAAAATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031973XLOC_031973Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050492-exon-scaffold_175-1491911889:11132..11604TCONS_00050492-exon-scaffold_175-1491911889:11132..11604Clytia hemisphaericaexon
TCONS_00050492-exon-scaffold_175-1510915933:11132..11604TCONS_00050492-exon-scaffold_175-1510915933:11132..11604Clytia hemisphaericaexon
TCONS_00050492-exon-scaffold_175-1575043694:11132..11604TCONS_00050492-exon-scaffold_175-1575043694:11132..11604Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_175supercontigscaffold_175:11132..11604 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.616935	0.43305	0.207737	0.770714	1.22556	0.515157	0	0.537805	0.397349	0	0	1.04374	0	0.158967	0.153569	0.204889	0.154195	0.565914	0	0.2819	0.677721	0	0	0.259948	0	0	2.04718	1.02393	0	0.886317
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050492 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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