TCONS_00050464 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050464
Unique NameTCONS_00050464
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1123

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050464 ID=TCONS_00050464|Name=TCONS_00050464|organism=Clytia hemisphaerica|type=transcript|length=1123bp
gtgaaaacaaaaaaataatcaaaaataaataaataatagaaAAATGTCTA
ACAAAGATAATGGGAACGTTCGAGATTTGTTCGGAGGGGCTTTAAGTTGC
TTTTTTCCCACAAATGCTTTGGACATGAGTGAAATTCGTGAAGTACCGAA
CAACCAAGAAGTGTTCCATCATCAGAAAACCGATCAAAGTATCATGTTTG
ATATCCTGGAATATCAAGATCAAGTACATGGGAGCGAGGCTATCAaATAT
CATTACATGGACATTGCAGAAGTAAATGATGCCAGTGAAGAAGCAGAAGT
GAACACTGTCGAAGAAAtaccaaaagaaaatttgagcaTTAAAGAATGTT
CACAAGCCTTGTTCTTGCTTGGCAGACAAATGATCTCCAAATATAAAGAA
GGGGCAGATGCAAAAAACTTGGTGAATATTTTGATGGTTTTGTATCGTCT
ACCTCAGTACGAAACTGATCTGTTGATTATCATGAACGACCCTGTTGCTA
TAAGTACAAAAAGTAGTAGCAGTGGTAACAACACAACTCCAAACGATGCT
TCTAAATGgtcggaaaaacttttcaaacagATCGCTTGTTCACTCAAAAT
TGTTGATTCCTCACTCTTTGGCTGATTGAAATGAAAGGTGGACTAAACTG
GATGATGGTGTCGTTGTATTACAAAAATTACCCCTTCACTTCCTGGTATG
AAAAAACATCTGAAAATGACGTTGATTCTTTAGCACGAAGCAACTGCATA
CTGTGTAAAATTGTCCGGAAAAAATGACATTATAATGGGACAtctgaaaa
caaaaacttttttaaaaacgtAGGAAATTATAAGTGCTGCATAAAAGTCA
AGTATAAGAGTTATATGGATGAGTTCGAGTTAAGTCGAGTTAAACTTGAG
ATTTGTAAAGTAGGAGCAGGGCTTTTCACCGTATGGTGTACTACATTTAG
GGTTTATGAGGAGAGAACCACCTTgccaaaaaattcgaaaaattttgaac
taTAGAGCTTAAAATCAAGGAGAAATAATTGTACTATCGTGGTTTGGACA
GAACTACTAACATAATTTCATATTCTTACAAAATGTCTTTACATTTTACC
ACATACAGTACATTTAATTTAAA
Run BLAST on NCBI

transcript from alignment at scaffold_172:80849..87423-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050464 ID=TCONS_00050464|Name=TCONS_00050464|organism=Clytia hemisphaerica|type=transcript|length=6575bp|location=Sequence derived from alignment at scaffold_172:80849..87423- (Clytia hemisphaerica)
GTGAAAACAAAAAAATAATCAAAAATAAATAAATAATAGAAAAATGTCTA
ACAAAGATAATGGGAACGTTCGAGATTTGTTCGGAGGGGCTTTAAGTTGC
TTTTTTCCCACAAATGCTTTGGACATGAGGTAAGTGATTATTCATCACCC
GAAAAAAATGCACCGTATTCCCTTCAATTAAGCACCGCGGCGCTCTTAAA
ATTTCAGTGCAGTGCACTTTAAAGGCTATATATATGGATGAAACTTGAAA
ATGCTCAATACTAAATTTTTGATTTTTCAACCTTTTTAATTCCTGAATAT
TCACGAGTTTGTAACGAATAACCCCTTAGATGTTCACAAAATTGACTTCA
CATCCCTGGTGTTGTCCGACATCCTCAACCGCAGAAGGAGGGAAGAAGGG
TAGAGGATGATGCCGGATAGGGAAATCGTTGCGCTTAGAATACACAATTG
CCCCTGTGTCCACGATACAACCGAACCATGGTTTAATGGTGACATCAATC
AAACAAGTGGGTAGAAAGCGTGCTTATTCAACGTCATAGTCTTGTATAGA
GTATGGTACCCAGTCCCCTCCACATGATCTCTGGTTGATTTAGGTGGGGG
TATATTTATCTACCAAGTGAATTTCAGTACTGAGTGGACATAGAACCAAT
ACCTCCCATCTGGGAGCCGATGCGCCTACAATTTCTTTCTCTTTCTGGAA
AAGCCCTAGGATACAAGAACATATAGTTGACGCTCTCTAATCCGATTTTC
AATGGGATTTTCAAAGTGACTTTCAATATTATTGAATAATGGAGCGTATC
GAACAGTAGAACGTCGAATTAGAGAGCTTCAACTGTATATTTATTTAAAC
AGTGAAATTCGTGAAGTACCGAACAACCAAGAAGTGTTCCATCATCAGAA
AACCGATCAAAGTATCATGTTTGATATCCTGGAATATCAAGATCAAGTAC
ATGGGAGCGAGGCTATCAAGTAATTTTGTATTTTTCACGAAAACTTCAAT
CCTTATTATTCTTTGCGAGCTACCGGGTGTGCCACAAAAAAGTTTCTCTC
TTTGAAACTAATTTTCTCGAAATCTAAATATTTTAAAAGAACCATTTCTA
TTTCATTAGAGAAAAGAAAGATAAACTTACATTATGATGGGTCATTTATT
GAATTCGATTCATTAGATCAAAAGTTATGCTCAATTCAATAAAAAGGTTA
CTTTCAGAAAGTGCTCGAAAACGTAAAAAATCGCCCTATCCCTAGGGGCA
GTAATTTTTTGTGGCACACCCTGTATTGAAGCTAACAGTGAGACGAGATC
ACAGATTTCTTACAGTTAGTGGACACTAAAGCGCAACGTGCATTCTTAAT
TATATCGACATTTTCTCAATNCCCTGTATTGAAGCTAACGGTGAGACGAG
ATCACAGATTTCTTACAGTTAGTGGACACTAAAGCGCAACGTGCATTCTT
AATTATATCGACATTTTCTCAATGCAACAGATATCATTACATGGACATTG
CAGAAGTAAATGATGCCAGTGAAGAAGCAGAAGTATTTTGATTATTGAGT
ATTTTTCATCAATTTTAATTTTCTCAGCATATTCGATGGTTTTCCTATTT
TGGTACCCTTTGCTCAGACTGTTATTGAAGACTCCAGGGTATTAAGGTGG
GGTCTAAATGCTTGCAACGTTACAAATCTGCCTCACAAGCTCATTTTGGG
CTCAAAAGAAGCGTATAACTAAGTAGAATAAGATTCAGTCTAGGCAGATG
TTTTATGATTTAGAAATTTAGCGTAATTCGCAAAAAACCTTCATTTTGCT
AGGGGGGGGGTACCAAGTTGTGTTACTGGACCAGTGCCGAAAAGTTGTAC
TTTCTTGTTTTTTGAGACCACCACCACTTAGTACCCTGGTACTAAGTTGA
ATTTACCCCTTAAAATAGGTTTACCACCCCTTAGTACCCGGTACAATCTT
GATATCACCATTGAGAAATGACACACCACTGTTAAGTACCCTGTACTAAG
TTGATTTTCCCCCTCAAAATAGGTATACCACCCTTTAATTCTTAGTAATG
GTACTTTCTGGTACACCTCCTTTAAATTTTCTAAAAAACATCAAACAATA
CCCGTTCAAGTACAGAAATCGGCCATACTCGCTTAAAAGTCTTCTACATA
GTTTTTCAAGAGCTTTCAGATTCTATAATTGGTTTTGGCCTAAAATGAGT
TCGAAATTTCCATAAAAAATGAGCTCTTGGGCTTTACCCTAGGTTTTCAA
TAAATGGGTCCAGAAATAACAACCCTTAAATATTTTCTGGGCCGCTCTTC
TAATATCAATCCACAGGGTATTAGGCATGTCTGGTCCAAGTTTAGTGCTT
TGTTTCAAATTTGCACGATAATTACACCGATCAGGCCTACTATGATAACA
CCCAGGGGAAAACAAAAATTTGATAAACAATAAACGTAATAAACATCCTA
ATAAAATGGTAAGAAATGAATATAGACTGCCTATAACAAGAATTTTTTTG
TGATTTTTCAGGATTTTGAGTACCAGATACTAACTCGATGCCTCATATTT
GGTATTGAGACCACCATTTAGTCCCTTGATACAAAGTTGCAAAAATGTTT
TTTTAAATTAGGACCACCACTTAGTACCATGTACTAAGTTGTTTTTTACT
TACCTTATCAAACCACCACCCGGTACTGGCCCCCACAACTTAGTACCAAC
CCCCCCTGATTTTGCGTAAATTTTTGCTATTTTGAGATGACGTCATAAAA
ATTTAAATTCTTATAACTTTTGATATAATAAATAATAATAAATAAATAAA
TAAATTGTACCATCCCCTAAGGGGAATTGGCCTAAAAATTGTTAGGAAAA
AAAAACTAACAAATTTAGGATATTCATTGCGCTGCTAGGTAAAGAAAAAA
ATCAAGAAATTATATTGCAAGCATCTCTCCAGTTGTTCCTGTCCATAGCG
AGATTATACCAGTTGTCTTTATCAATATTAGCCTTTTTAAGAGCTTTAAA
CAAAGAGCGACCGTAAGTCATTTCGGGAGAACCCCGCGGTCGTTTTTCAC
TGACCCACGACGAAATCATTTTCCTTGGTAGACGATTCATATCCATGCGT
ACAACATGGCCAGCCCATCTTAACTGCCTTTTAACAATATAAGAATCGAT
ACATTTGACATCAAGACGATTAAACAAATTCTCATTCGAAATATGCTTTT
CAAAAACATCAATCATATTTACTCCACACATAGCTCTTACACATCTATTG
TGAAAGGAGCGCAACCATCGATATAACTCCTCTGTCAGACACCAAGATTC
TGATCCATAAAGTAGGATCGACAATATAAGGGATTCATAAACCTTCCCTT
TCACTTTCAAATTTAATTTTACATTTCCGAAGATACATTTCTTCAACGAA
CCAAACATATTTCCCGCTTTTTTAACTCGAAGTAGCACATCTTCTCGATC
GGAACAATCGCCAGTGATAACAGATCCAAGATAGGTAAATCTATCTACGA
CAGGGAAGAAATAATTATCGGAATAAATTGAAATTTTGACCAAAAATGCA
CAATCCTGACGTCATCATGCTTTTAAAAAAATTTTGAAATGTTTTTAAAA
TCTGCATAAAAATGCATCTTTGGTCAAAATATGAAATTATTTTGATGATT
TTATCAAAAGTTATTAGAATTTCAATTTTTATGACGTCATCAAAATAGCG
CAAAATTGAAGCTTTTTGCGAATTACGCTAAATTTCTAAATCATGAAACA
TCTGCCTAGACTGAATCTTATTCAATTAGTTATACGCTTCTTTTGAGCCC
AAAATGAGCTTGTGAGAAAGATTTTTAACGTTGCAAGAATTTTGACCTCA
ACGAACCCGCCTTATTACCCTGGAGGAGGAGTAGGGAGAGTATTTAAGAG
AACTAAACACCAGGGCTTTTCAAACTGCACATTATAACTTATCAAGTAAT
AAGGAACTAACTTACAATTGCTACACGGTGTTTCCTGCTGGCGCAATCTT
TATTTCAATCCATTATAACTTATAATATAATATAAGTAGACATTTAGAAT
TATTCTCAATACATCGGTGAGACAAATGAATCTTCTAGTTTCTCGATGTA
ATATCCTTTTCTTTCTCATAAATCGTGAGCTTCCAGTCAAAGTAAAGCTT
TCTAAGAGCCATCTTTCCTGAATTTACCCATCACCTGTTTAGGTAAACTT
TTTAATAAATCAATGCGTTAACTAAACCCATAAATTTGGGTTTTTGGCTA
AATGGTACGCATTTTCTTTTTAGATACTCTATGTTTCATTCCCTTCCCTT
TAGGTGAACACTGTCGAAGAAATACCAAAAGAAAATTTGAGCATTAAAGA
GTAAGTATACTTTGCAAGCGCTCAATAAAAACACTGTCTCTCTGGGATTT
TATTACCCCCGTTTGAACCTCTGGAGAGATTTGGTATTGACATGGTGAGG
TGGAGTTCAGGGTCCAACTGTTGAAAATCGTTTAATAGTATAATGAGAAG
AATCATGAATATTCTTTCTTCGTTGTAGATGTTCACAAGCCTTGTTCTTG
CTTGGCAGACAAATGATCTCCAAATATAAAGAAGGGGTAAGAAAAATTTG
TGTTATCGATGATAGCTTGATGGAAGATTTGCAAGAGATGCCATAAATCC
CGTATACTATATATCCCACATTTTATCCCTCGGAATGCTAACAAACGTCT
TTCAGTTGTTAAGCAATTTCTACCGTGACAGAGCCACGAGAAAACATAAA
GGGATGCTTTTATTCAAAACTACTCTAAGGTCCCGAATAGACGTCCCGCT
TATTAATTTTCGAAAACTTTTCGGACTCCCCCCCTCCCGTTTATTAATTT
TCTAGTTTTTTGTTTTTGAGTTGAAGTGTAAATCAGGCTTAATCCATTTC
GAACGTTCGAAAATGAAAATTCATAGAAGTAGGTAAAAGGAAACTTCTAA
ATATTTTCAGACCCCCCCGTTTATTCAGACCCCCCCNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCGTT
TATTCAGACCCCCCCGTTTATTATATTTTGCAAAAATTTCGGACCCCCCC
TTTTATTCAGACCCCCCTACTATTCGGGACCTTAGAGTAGTCAAATACTC
GTTCCTGAAGGCCTACTTGCAAATTCTAATAAGTGATTGCTCTGGATTGC
TTGAATAGAATCACTCTATAAAATTCAATTTCTCACAACTAAAAAGTCTT
TTTTTAGTTCTTAGTATCATTGTTTGGGTTGCTGATGGCAAAGGCGAGCA
TTTAAATTTAGCAAAATTGTGTTATCTGTTTGAACGTCTAAGCGAAAGAA
AAATCTTATCAAAAATATTCTGATCGAATTTTGTTAATCCTTGTTGTTAT
TACTGCAGGCAGATGCAAAAAACTTGGTGAATATTTTGATGGTTTTGTAT
CGTCTACCTCAGTACGAAACTGATCTGTTGATTATCATGAACGACCCTGT
TGCTATAAGGTACCTCTCTAATTCTTATTTTGACTTTTAAACCCAGCAGG
CACACAACGTCGTTTCAACGTTCATCTAATGTTCACAACGTCATATAACG
TTAGATGAACGTTGTTACAACGTCGTGTGCTAGCTGGAAATGTATTTATA
ATTAATTCTCAATCATGTCATCAATTTTTACTTATCAGTGGGACTACAAT
CAGAGATATCTGCTTATCTTTTGTCTTTCTTGCCTAAATGTGTGTCTGTA
TCCAAACTGTAGATAGACTGGATAATTAAAAAAATCTTTACTCTTTCCTA
GACTGATGCCTGGGATACGAAAATAGTAGAATATAGGTCATTTCGATCAT
TTCAGAACCCATCATCCAACGTTATTGTCAACTTTTTTTCCCCCGTTTTT
TTACAGTACAAAAAGTAGTAGCAGTGGTAACAACACAACTCCAAACGATG
CTTCTAAATGGTCGGAAAAACTTTTCAAACAGATCGCTTGTTCACTCAAA
ATTGTTGATTCCTCACTCTTTGGCTGATTGAAATGAAAGGTGGACTAAAC
TGGATGATGGTGTCGTTGTATTACAAAAATTACCCCTTCACTTCCTGGTA
TGAAAAAACATCTGAAAATGACGTTGATTCTTTAGCACGAAGCAACTGCA
TACTGTGTAAAATTGTCCGGAAAAAATGACATTATAATGGGACATCTGAA
AACAAAAACTTTTTTAAAAACGTAGGAAATTATAAGTGCTGCATAAAAGT
CAAGTATAAGAGTTATATGGATGAGTTCGAGTTAAGTCGAGTTAAACTTG
AGATTTGTAAAGTAGGAGCAGGGCTTTTCACCGTATGGTGTACTACATTT
AGGGTTTATGAGGAGAGAACCACCTTGCCAAAAAATTCGAAAAATTTTGA
ACTATAGAGCTTAAAATCAAGGAGAAATAATTGTACTATCGTGGTTTGGA
CAGAACTACTAACATAATTTCATATTCTTACAAAATGTCTTTACATTTTA
CCACATACAGTACATTTAATTTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031958XLOC_031958Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050464-exon-scaffold_172-1575043694:87295..87423TCONS_00050464-exon-scaffold_172-1575043694:87295..87423Clytia hemisphaericaexon
TCONS_00050464-exon-scaffold_172-1575043694:86455..86571TCONS_00050464-exon-scaffold_172-1575043694:86455..86571Clytia hemisphaericaexon
TCONS_00050464-exon-scaffold_172-1575043694:85892..85943TCONS_00050464-exon-scaffold_172-1575043694:85892..85943Clytia hemisphaericaexon
TCONS_00050464-exon-scaffold_172-1575043694:83074..83120TCONS_00050464-exon-scaffold_172-1575043694:83074..83120Clytia hemisphaericaexon
TCONS_00050464-exon-scaffold_172-1575043694:82838..82895TCONS_00050464-exon-scaffold_172-1575043694:82838..82895Clytia hemisphaericaexon
TCONS_00050464-exon-scaffold_172-1575043694:81865..81965TCONS_00050464-exon-scaffold_172-1575043694:81865..81965Clytia hemisphaericaexon
TCONS_00050464-exon-scaffold_172-1575043694:80849..81467TCONS_00050464-exon-scaffold_172-1575043694:80849..81467Clytia hemisphaericaexon
TCONS_00050464-exon-scaffold_172-1510915933:87295..87423TCONS_00050464-exon-scaffold_172-1510915933:87295..87423Clytia hemisphaericaexon
TCONS_00050464-exon-scaffold_172-1510915933:86455..86571TCONS_00050464-exon-scaffold_172-1510915933:86455..86571Clytia hemisphaericaexon
TCONS_00050464-exon-scaffold_172-1510915933:85892..85943TCONS_00050464-exon-scaffold_172-1510915933:85892..85943Clytia hemisphaericaexon
TCONS_00050464-exon-scaffold_172-1510915933:83074..83120TCONS_00050464-exon-scaffold_172-1510915933:83074..83120Clytia hemisphaericaexon
TCONS_00050464-exon-scaffold_172-1510915933:82838..82895TCONS_00050464-exon-scaffold_172-1510915933:82838..82895Clytia hemisphaericaexon
TCONS_00050464-exon-scaffold_172-1510915933:81865..81965TCONS_00050464-exon-scaffold_172-1510915933:81865..81965Clytia hemisphaericaexon
TCONS_00050464-exon-scaffold_172-1510915933:80849..81467TCONS_00050464-exon-scaffold_172-1510915933:80849..81467Clytia hemisphaericaexon
TCONS_00050464-exon-scaffold_172-1491911889:87295..87423TCONS_00050464-exon-scaffold_172-1491911889:87295..87423Clytia hemisphaericaexon
TCONS_00050464-exon-scaffold_172-1491911889:86455..86571TCONS_00050464-exon-scaffold_172-1491911889:86455..86571Clytia hemisphaericaexon
TCONS_00050464-exon-scaffold_172-1491911889:85892..85943TCONS_00050464-exon-scaffold_172-1491911889:85892..85943Clytia hemisphaericaexon
TCONS_00050464-exon-scaffold_172-1491911889:83074..83120TCONS_00050464-exon-scaffold_172-1491911889:83074..83120Clytia hemisphaericaexon
TCONS_00050464-exon-scaffold_172-1491911889:82838..82895TCONS_00050464-exon-scaffold_172-1491911889:82838..82895Clytia hemisphaericaexon
TCONS_00050464-exon-scaffold_172-1491911889:81865..81965TCONS_00050464-exon-scaffold_172-1491911889:81865..81965Clytia hemisphaericaexon
TCONS_00050464-exon-scaffold_172-1491911889:80849..81467TCONS_00050464-exon-scaffold_172-1491911889:80849..81467Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_172supercontigscaffold_172:80849..87423 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.84596	10.7226	8.46492	6.84468	6.39745	4.51561	6.33379	6.79954	6.64122	5.86039	4.96596	5.67982	5.34469	5.28122	6.461	7.84332	7.70488	9.65195	3.08429	3.46906	7.18077	5.75145	6.4597	4.63538	6.73103	6.96304	3.92924	3.31721	4.86587	5.44844
Blast
[Close]
BLAST of TCONS_00050464 vs. Swiss-Prot (Human)
Match: MOG1 (Ran guanine nucleotide release factor OS=Homo sapiens GN=RANGRF PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.076e-33
Identity = 70/183 (38.25%), Postives = 101/183 (55.19%), Query Frame = 2 
Query:   77 LFGGALSCFFPTNALDMSEIREVPNNQEVFHHQKTDQSIMFDILEYQDQVHGSEAIKYHYMDIAEVNDASEEAEVNTVEEIPKENLSIK-ECSQALFLLGRQMISKYKEGADAKNLVNILMVLYRLPQYETDLLIIMNDPVAIXXXXXXXXXXXXXXDASKWSEKLFKQIACSLKIVDSSLFG 622
            LFGGA S   P  A+D+S++R VP+NQEVF H  TDQS++ ++LE Q  V G  A +YH+ D+  V  A     V +V+ +  ENL+++  C +A  L G+Q I+  KE       V +   L RLPQY+TDLL+  N P       + S         + WS   F+Q+  SL + D ++FG
Sbjct:    9 LFGGAFSAILPMGAIDVSDLRPVPDNQEVFCHPVTDQSLIVELLELQAHVRGEAAARYHFEDVGGVQGA-RAVHVESVQPLSLENLALRGRCQEAWVLSGKQQIA--KENQQVAKDVTLHQALLRLPQYQTDLLLTFNQPPP----DNRSSLGPENLSPAPWSLGDFEQLVTSLTLHDPNIFG 184
The following BLAST results are available for this feature:
BLAST of TCONS_00050464 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MOG15.076e-3338.25Ran guanine nucleotide release factor OS=Homo sapi... [more]
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