|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050446 ID=TCONS_00050446|Name=TCONS_00050446|organism=Clytia hemisphaerica|type=transcript|length=898bp
TTCAAATCGGGGTAAATCGGGCTAATTGACGTGTTTTTAGCAATCCGATC
AAAGAGCAGAAAATTTCTCACATTTTCACTTTCAAGATGTCTGACGATGG
AGTTGAAGCCAGGGTCCAGGGCTTCCTCCACAAGAAGTTTCCAGGTATTG
ACGAAGATCTCCTAAACTATGTTGTAGATGTCACCAAGACAAGTGCTGAA
GATTTTGAAGATGCAGAGGAAATATATGACGCAGTTGGTGGGGTTCTTCA
CGAAGCTACAGAAAATGACGATGAAGATGAGATCAAAGAAATCTGCAATG
GGATTATGAACCTTATCAAAGGTGGTGAGGAGGAGAAACCACAACAACAA
GTTAATGGGAAGCGAATTCTGGATGCACCAATCCACATAGGAGATCGAGC
AAAGAAAGATGATGAACATCAAGTTGAACAGAATAGTATATGGATGAAAC
AAAATGTAGAAGATACTACCCTGAAAACAGTCGATTTGAAGAAACTGGAA
AGAGCAGAGGCTAAAcagaaacaaaaacttgagAGACGTGACAAAGACGA
TAAGGATGACGAATCTTCCGCTGGACCCACAACCAACCAAGTCATCCAAA
AGAAGGATATGAAACAAGAACTATTAGGAGGGAAAgttgttgatatacga
attgaaaattttgatcttGCATATGGCAGTAAAGTATTACTTCAAAACTG
TAATTTGGTCATGGCCTTTGGTCGAAGATACGGTTTTGTGGGTCGAAATG
GAATGGGAAAGACTACATTGTTAAGGGCTATTTCGAAACGTGAATTGTAT
ATTCCGTCACATGTCACAGTACTTCATGTAGAGCAAGAAGTTGTGGGGGA
TGAAACGCTTGCAACTGACAGCGTACTTGAGGCCGACACTGTCAggta Run BLAST on NCBI protein sequence of TCONS_00050446-protein >TCONS_00050446-protein ID=TCONS_00050446-protein|Name=TCONS_00050446-protein|organism=Clytia hemisphaerica|type=polypeptide|length=270bp
MSDDGVEARVQGFLHKKFPGIDEDLLNYVVDVTKTSAEDFEDAEEIYDAV
GGVLHEATENDDEDEIKEICNGIMNLIKGGEEEKPQQQVNGKRILDAPIH
IGDRAKKDDEHQVEQNSIWMKQNVEDTTLKTVDLKKLERAEAKQKQKLER
RDKDDKDDESSAGPTTNQVIQKKDMKQELLGGKVVDIRIENFDLAYGSKV
LLQNCNLVMAFGRRYGFVGRNGMGKTTLLRAISKRELYIPSHVTVLHVEQ
EVVGDETLATDSVLEADTVR Run BLAST on NCBI transcript from alignment at scaffold_172:1212..9414+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050446 ID=TCONS_00050446|Name=TCONS_00050446|organism=Clytia hemisphaerica|type=transcript|length=8203bp|location=Sequence derived from alignment at scaffold_172:1212..9414+ (Clytia hemisphaerica)
TTCAAATCGGGGTAAATCGGGCTAATTGACGTGTTTTTAGCAATCCGATC
AAAGAGCAGAAAATTTCTCACATTTTCACTTTCAAGATGTCTGACGATGG
AGTTGAAGCCAGGGTCCAGGGCTTCCTCCACAAGAAGTTTCCAGGTATTG
ACGAAGATCTCCTAAACTATGTTGTAGGTAAGCACTTGAATATTTCCTAA
TAATAGAATTCAAACATATAGTAGGTACGGTCTTGTCTGGCTGTAAGTTT
TTATGTCATATATCCAGACGAtgttagcaactccagaagatttttcaagt
tttaatttttttttcaaaatctatcctatcttgaagagctttgaaaaaga
aagaaaatgagtggtcataggcctccagaggattaggggttgtaaagata
ttcaaattttagtgtaaaaaatttgactaaaaatgtcaaaaaaaaggtta
ggaaaatagcttggaaaaattcgaaaaaNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTCttgcattttcaaatatt
tatttgcTTACGCTCAAAGTTACGCAAAAAGGACAAAATACAaccaatgg
gccattccagaaaattttcatTACCCCTGTCAGACAAcgtacattttcaa
attttttccagcCTCAGAAATATTTTGTTTCCAGTCGTGGTTggaaattc
cgatgaaaattcatgtacttttgcaaaatgtgTTGGGGAGGAAATTCCAC
TATTTTTTACCGTTTttattcaattgccttggaaattcatacattttctt
ccctcgccttggaaattttgaattttggtgaaaacttttgccctcggaaa
ttcCGTGTTGTCcaccccctgttacagacattCTGGAATGACCCAATAAC
ATCACATCAGggccagtatggattccacgaagatatttttccgtacagca
agcctcatgccaagcaaaatttcttttgtaccaacatttaATTTTacaat
aagggtgcaagatgggaaaagaggcgcataAATTGACACGAGCGTAAGCg
agcgaaagcaaatttagccaaatgaaaGCTAANGCGCCAACATGATTAAT
AAATTGACACGAGCGTAAGCgagcgaaagcaaatttagccaaatgaaagc
taaaaatcgctggattatggagtcattcacgccgagctggaattattact
ttacgccaactgaaaatcaaacaatctttgtaagtacccttacgccaatg
cgccaaaaacgtttcagttgtacgccgaagatcTTCAGCGTTAGTTACAC
AAAATCCATACTGGCATCAGGAAGATGATTgattaatgataaaaaaagta
aaatattatacgtttttgtaattttcccaTCAAatcactttttgaaattt
ttcttaggGGGCTAGCCCCCTTAGAACCCCCAACTCAATATTGCGCTCAC
TTTGCTCGCACCTTATCCcacattcaatattttcaagACTTGGCAACTAc
cttaagttggtctaatgtcgacatccctcttctaattttgttactcttct
ttagagataggaataataaaaaggtcggaatcactgattgaaactaattt
tctttgagTCCATAAGTGATTCCAAGTTTCCTATTATTTCTATCTTTAAA
GAAgaatgtcgaaattagaagagggatgttgacattagaccaacttacag
tatgcagtttttgtgattttttttatatgacAAAAAAGAATTGTCATGTT
GCCTAATCACAAAAATCTCCAATCACTGctgccatcttgtttcactttaa
atgtggtgttttaaaattcctcaGCTACATATTTTTTACGGAAAAGGTTT
TTTCCAGGTTCTTTTAATCCCGAGAACTAAGTGAGAGTGCATAGTGGGCA
GAGGGGTATCAAGCCCCCCCCCTTCAAAATGGCAATTCCCTCTTTTAGCT
CAACCCCCTCTTAAGAATGAAAATTCCTTGACCCCCCCCCCACCCCCTCT
TTTTTCGACCTTTTATGAAACCTTTTACAAACTGTTACAAAAGCAGCTGT
CTTGCAAAGGTTGAAAAAGCAACATACTCCATCAAGAGTTTTTGCTTCAT
TCAAATGAATGGAAATATAATAATTGTTGAGAAATCTCAAAATGAATCTT
TTGCAAATTGCCAAATCTTCCAAGCCCCCCTTAAAAATTAACCCCCCTCT
TTTTGTCCAAGCCACCCCTTTTATTTGAAATTTTCACAAGCTTCTCTTCT
TTTAAATTCAGTAAAATTCTCAAACCCCCTTTTTTCAAGGGGGTGCCCAC
TATGGAGTGGTTCCTCTTGCTTATTTTCCTTTCCACATTGAGCCAGAGTT
TCTGAATATGAATTCTGAATAGAAGAAAACCTAAGAATAAAGCAACAGTA
TTCTGCTAATTAAAACCTAAATATTTCCAGGGAGTTTTATTAATTTTGTA
TTACAATGATTAAAAAGCCTATATAAAGCACCAAGAAAAAAACCCAACAT
AGAGAATTTTCGTAATACCTTGAATCATCAGAAATTTTGCCTTCTCAAAG
CAAAACAACAAAAATCAATCTCACTAAAGCAAAACATTGTGCCTACAGGA
TTTGGTTATTTCACATTTAAAATATCCAAGTCAGAAAAATCTTTAAAATG
ATAAAATTTGCAAAAAAACGAGGTTCTTTAGGTAATAGATCAATTGCTCT
GTGTGTTGAAGCAGTTGACTAAGAAATGATTTTTTAATTATTTGTGATTG
TTAATGTTATAAAGATTGTTTTCTCCAAAAATGAAAATGTTCCTTGGCTT
GAAGAATATTTCTGAAAATCAGTGATTTGTAGGGTGTGGGGTAACAAATC
TATAGTTTCTGTAACTACCTATCATTCCCTTTTTTGTAGACTAGTAATAT
ATACCCCGTTTTAACATTTTGGTGTGATAGAGTATGTTTCTTTAAAGAAA
CAGGTTTGATACTCCTTCAAATCGGTCTCAACCATTCTCAGCTTTGTGTT
TCATATTTAAGTCCATGATTATATTTGTCATCATTGTTTTAGATGTCACC
AAGACAAGTGCTGAAGATTTTGAAGATGCAGAGGAAATATATGACGCAGT
TGGTGGGGTTCTTCACGAAGCTACAGAAAATGACGATGAAGATGAGATCA
AAGAAATCTGCAATGGGATTATGAACCTTATCAAAGGGTAAGACAATACA
AAAATCTTATCTATATTATCTCAGATTATCTATATCTTATATATGATCTG
ATctgatttttaaacttttacatCACTTTTGTGGGCTTGTAAGTTTGATT
AGAAAATTCTGAGCTTACCTTATTTCCTCACTGTGGTCTACATAGATTGA
TCAGAGAAAAGAAAGATGAGAATGCAAAAATATGTTAGCTTATCAGTATC
TCATGGTAAATGCAGGAATTTTCTCAATGAAAATTTGTATAAGATAGGAA
AATATATAAGGTTTTGTGCaaggaaaatatcaaattagatCAATTACAGT
GTAACCAAATGTTTTTCTCTACTTTCCTTAAGGTGTATATTGTACATTCT
CTTTGAAGAAATTTATTATTgttccctattgttatattttgctgaataaa
caaaaaattattttttcctctttctgaccaatcttgctccactttcgtgt
caattcaatgtgaaaaagcttgtaaattaaagtCGATAAGAAAACAAACT
ATATcaatcttatttaaaaacaaaacctttaaagatcTCTAAGAAAAACG
CCAAATAATGTATTCTTCAAGGAAAGTACATGATTTAACTTATTATTCAA
GGACAATTTGGAAGAACATAAGGAAAATATAGAATAACATCATTCTCAAG
AAAAGTGAAGAATAGCGTATTCTTTAAGGAAAATAAAGGATAGTGTAttc
tataaataaaataaaataaaaatgataaaaaatcaactagtttgagtaaa
gaaaacgatttaagttaattttatactcaaagtttcatgccatcataaaa
ttaacttaaatcgttttctttactgAAACTAGTATAAAGCTCTGTTATCA
TTAACATTGAGCACTGTTATTGGTTTTGGCTAACACAAAGGATAAAAGAA
TCAAGTAAAATGTGACTTctcaagcgatttggagtacacaaAAGACCGAT
CGGCCCAAAGCGGGTAAAATACCGGTCTTAAAGCGGCCGaagtaaaatct
ttttgctTATTGTTCGTGAAGATCGGCCTCCAAGCGGGCGAGAGAATTTT
TGAAAGGTCCACTGTAGGCCACTCTTTTAGCGGCCCTTTTTGAGCAAGAG
ACTTCCAAGCGGCATCTGGAGCGGTCGAAAGTCCGGTCCAAAAAAAGTCT
GGTTCTAAAAAACTACTCAATCCCCAAAAGtacaatctttttcaaaaagt
agaaTTGAGGAGACGTCAATAACGTTTagcattttaaaatctttcgaTAT
GAGCCATATAATATGATTAAGATATGTTGAAAAAGTGTATCGATAGTAAA
ATTATCTATCTTGTATCGATAAGGAAGAGACGCTCGTGaaaattacgaag
aaagcgtattgataaaactaagcataaaAGACACCCGTGaaaattacgaa
gaaagcgagttgataaaactaGGCATAAGAGACGATCGTGAGAATTACGG
AGGgagcgagttgataaaactaagcataaCAGACACATTTAAACgctaca
aaaaaatcaaattcagaaAATTAAGCATGAGAGATGCTTGTGAAAGCAAT
GTAGGAAACGAGTTTTATATTTGTTGACTATTCTTGTTAAAACatacaaa
gaaaaacaagttgGTTAAAGTATGCATAAGAAACTCTAGTGAAATTTATG
AAGAAAACAACTATGCTTTTGTTGCAAATAGAAATAGATCAGCTCAATAA
AAGTTCTGGCTAAGAGAAAAATGAGACTAAGTAAAAGTAAGTATATAAGT
ATATAAGTAAAGAAATCAATAGCGGCCATCGGGACGAAGCGTACCGGGCA
TTGGACCGCTCGGGCCCCTTTAGCGGCCTCAAAGTCTCTTTGTTATGGCC
GCTTTTCATGATCGGCCATGCAACGGCCTCTTTCGATATTTGAACGGCCT
TAGCGGTAAAAAGACCAGTCCAATAGAGGCTATAGAGGAACGGTCATTAG
ACCGATCGGACTTttgtgtactccaaatcgcttggggagtcacaaatGTG
GTGCAACctattctttaaagaaaattattggtcaatgtattcttcaagga
aaatgtTGGATAATTTATTCTTCAAGGAATTTTCAGGATTGCAATATTCT
TTAGGATCACAATATTCTTTAGGATCATGCAGGGCAAGGTGTTCTTTAAG
GATAATTAAGGATAACACATTCTTCAAGGAAAAGCGAGGGTAGTGTATTC
TTTAAGGAAAATATACCATAATGTATTCTTTAATGAAAATATAGGTCAAC
GTATTCTTTAAGGAAAATCTAGGGCAATGTATTCTTTAAGGAAAATCTAG
GTCAATGTATTCTTTAAGGAAAATATAGGTCAacgtattttttaaggaaa
atataGGTCAAcgtattcttcaaggaaaatcTAGGTCAAcgtattcttca
aggaaaatcTAGGTCAAcgtattcttcaaggaaaatcTAGGGCAATGTAT
TCTTTAAGGAAAATCTAGTGCAATATATTCTTTAAGGAAAATCTAGGGCA
ATGTATTCTTTAAGGAAATTAAAGATCATTGTATTCTTCAAGGAAAGTGT
GGGATAatttattttccaaggaaaattgaGGGTAGTGtattctttaaccc
tttgagtgccagggtccttttttctaagttttttttaaaaaatcgctagt
tcaaactttaagggcttatatctcctgatctagaaggcattagaagctcg
tatatagctcgttggatagcttagagtctcttctttNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGGCGTAT
TGTTTAAAGAAAGTATAGGTCAACGTATTCTTTAAGGATTATTTGGACAa
tgtattttttaaggaaaatctaGGAATGTAATTGTCACGGATAATGTTAG
ATAGATCAAGcattcttccaaaaaaatacatgatgaaatattttttgggg
aaaatttaggTTAAAgtattcttcaaggaaaattaTCTCTTCTTGGATAA
TGTTTTACAAAGGCTGACGCATATCCTTGGTTGGTAGTTTAGAATGGttt
gcaaaatttttgtttcatacaCTTCAAGTTCCAAAGATTACACACATCTT
TATCCTAATGTTTTCAACGTAAATAGCTCCGAGCTTTCATCAAACACTTT
TGGTGGAGAGAAGAATTAGAATTGATAAAATGTGTATATAATGTATAATA
TGTATACAAACATCACACATTTTCCTTAGTGGTGAGGAGGAGAAACCACA
ACAACAAGTTAATGGGAAGCGAATTCTGGATGCACCAATCCACATAGGAG
ATCGAGCAAAGAAAGATGATGAACATCAAGTTGAACAGAATAGTATATGG
ATGAAACAAAATGTAGAAGATACTACCCTGGTAAATTTCGCTctcaatat
tttatcaaaatacttTGAGTTTCTCTCATCCCTCTCATTTTATAGCAAGC
ATCTTTATATTTCTTAATATCTTCATATTTTAGCTTCAACACAAGATGTA
TATAAACATTCTGGAAATACCCATGTACATTTTGCTCTCAGCACCATATT
TTAATTCTTCAAAATCTTCCTTTCATAGAAAACAGTCGATTTGAAGAAAC
TGGAAAGAGCAGAGGCTAAAcagaaacaaaaacttgagAGACGTGACAAA
GACGATAAGGATGACGAATCTTCCGCTGGACCCACAACCAACCAAGTCAT
CCAAAAGAAGGATATGAAACAAGAACTATTAGGAGGGAAAgttgttgata
tacgaattgaaaattttgatcttGCATATGGCAGTAAAGTATTACTTCAA
AACTGTAATTTGGTCATGGCCTTTGGTCGAAGATACGGTTTTGTGGGTCG
AAATGGAATGGGAAAGACTACATTGTTAAGGGCTATTTCGAAACGTGAAT
TGTATATTCCGTCACATGTCACAGTACTTCATGTAGAGCAAGAAGTTGTG
GGGGATGAAACGCTTGCAACTGACAGCGTACTTGAGGCCGACACTGTCAg
gta Coding sequence (CDS) from alignment at scaffold_172:1212..9414+ >TCONS_00050446 ID=TCONS_00050446|Name=TCONS_00050446|organism=Clytia hemisphaerica|type=CDS|length=3240bp|location=Sequence derived from alignment at scaffold_172:1212..9414+ (Clytia hemisphaerica)
ATGTCTGACGATGGAGTTGAAGCCAGGGTCCAGGGCTTCCTCCACAAGAA
GTTTCCAGGTATTGACGAAGATCTCCTAAACTATGTTGTAGATGTCACCA
AGACAAGTGCTGAAGATTTTGAAGATGCAGAGGAAATATATGACGCAGTT
GGTGGGGTTCTTCACGAAGCTACAGAAAATGACGATGAAGATGAGATCAA
AGAAATCTGCAATGGGATTATGAACCTTATCAAAGGTGGTGAGGAGGAGA
AACCACAACAACAAGTTAATGGGAAGCGAATTCTGGATGCACCAATCCAC
ATAGGAGATCGAGCAAAGAAAGATGATGAACATCAAGTTGAACAGAATAG
TATATGGATGAAACAAAATGTAGAAGATACTACCCTGAAAACAGTCGATT
TGAAGAAACTGGAAAGAGCAGAGGCTAAAcagaaacaaaaacttgagAGA
CGTGACAAAGACGATAAGGATGACGAATCTTCCGCTGGACCCACAACCAA
CCAAGTCATCCAAAAGAAGGATATGAAACAAGAACTATTAGGAGGGAAAg
ttgttgatatacgaattgaaaattttgatcttGCATATGGCAGTAAAGTA
TTACTTCAAAACTGTAATTTGGTCATGGCCTTTGGTCGAAGATACGGTTT
TGTGGGTCGAAATGGAATGGGAAAGACTACATTGTTAAGGGCTATTTCGA
AACGTGAATTGTATATTCCGTCACATGTCACAGTACTTCATGTAGAGCAA
GAAGTTGTGGGGGATGAAACGCTTGCAACTGACAGCGTACTTGAGGCCGA
CACTGTCAggATGTCTGACGATGGAGTTGAAGCCAGGGTCCAGGGCTTCC
TCCACAAGAAGTTTCCAGGTATTGACGAAGATCTCCTAAACTATGTTGTA
GATGTCACCAAGACAAGTGCTGAAGATTTTGAAGATGCAGAGGAAATATA
TGACGCAGTTGGTGGGGTTCTTCACGAAGCTACAGAAAATGACGATGAAG
ATGAGATCAAAGAAATCTGCAATGGGATTATGAACCTTATCAAAGGTGGT
GAGGAGGAGAAACCACAACAACAAGTTAATGGGAAGCGAATTCTGGATGC
ACCAATCCACATAGGAGATCGAGCAAAGAAAGATGATGAACATCAAGTTG
AACAGAATAGTATATGGATGAAACAAAATGTAGAAGATACTACCCTGAAA
ACAGTCGATTTGAAGAAACTGGAAAGAGCAGAGGCTAAAcagaaacaaaa
acttgagAGACGTGACAAAGACGATAAGGATGACGAATCTTCCGCTGGAC
CCACAACCAACCAAGTCATCCAAAAGAAGGATATGAAACAAGAACTATTA
GGAGGGAAAgttgttgatatacgaattgaaaattttgatcttGCATATGG
CAGTAAAGTATTACTTCAAAACTGTAATTTGGTCATGGCCTTTGGTCGAA
GATACGGTTTTGTGGGTCGAAATGGAATGGGAAAGACTACATTGTTAAGG
GCTATTTCGAAACGTGAATTGTATATTCCGTCACATGTCACAGTACTTCA
TGTAGAGCAAGAAGTTGTGGGGGATGAAACGCTTGCAACTGACAGCGTAC
TTGAGGCCGACACTGTCAggATGTCTGACGATGGAGTTGAAGCCAGGGTC
CAGGGCTTCCTCCACAAGAAGTTTCCAGGTATTGACGAAGATCTCCTAAA
CTATGTTGTAGATGTCACCAAGACAAGTGCTGAAGATTTTGAAGATGCAG
AGGAAATATATGACGCAGTTGGTGGGGTTCTTCACGAAGCTACAGAAAAT
GACGATGAAGATGAGATCAAAGAAATCTGCAATGGGATTATGAACCTTAT
CAAAGGTGGTGAGGAGGAGAAACCACAACAACAAGTTAATGGGAAGCGAA
TTCTGGATGCACCAATCCACATAGGAGATCGAGCAAAGAAAGATGATGAA
CATCAAGTTGAACAGAATAGTATATGGATGAAACAAAATGTAGAAGATAC
TACCCTGAAAACAGTCGATTTGAAGAAACTGGAAAGAGCAGAGGCTAAAc
agaaacaaaaacttgagAGACGTGACAAAGACGATAAGGATGACGAATCT
TCCGCTGGACCCACAACCAACCAAGTCATCCAAAAGAAGGATATGAAACA
AGAACTATTAGGAGGGAAAgttgttgatatacgaattgaaaattttgatc
ttGCATATGGCAGTAAAGTATTACTTCAAAACTGTAATTTGGTCATGGCC
TTTGGTCGAAGATACGGTTTTGTGGGTCGAAATGGAATGGGAAAGACTAC
ATTGTTAAGGGCTATTTCGAAACGTGAATTGTATATTCCGTCACATGTCA
CAGTACTTCATGTAGAGCAAGAAGTTGTGGGGGATGAAACGCTTGCAACT
GACAGCGTACTTGAGGCCGACACTGTCAggATGTCTGACGATGGAGTTGA
AGCCAGGGTCCAGGGCTTCCTCCACAAGAAGTTTCCAGGTATTGACGAAG
ATCTCCTAAACTATGTTGTAGATGTCACCAAGACAAGTGCTGAAGATTTT
GAAGATGCAGAGGAAATATATGACGCAGTTGGTGGGGTTCTTCACGAAGC
TACAGAAAATGACGATGAAGATGAGATCAAAGAAATCTGCAATGGGATTA
TGAACCTTATCAAAGGTGGTGAGGAGGAGAAACCACAACAACAAGTTAAT
GGGAAGCGAATTCTGGATGCACCAATCCACATAGGAGATCGAGCAAAGAA
AGATGATGAACATCAAGTTGAACAGAATAGTATATGGATGAAACAAAATG
TAGAAGATACTACCCTGAAAACAGTCGATTTGAAGAAACTGGAAAGAGCA
GAGGCTAAAcagaaacaaaaacttgagAGACGTGACAAAGACGATAAGGA
TGACGAATCTTCCGCTGGACCCACAACCAACCAAGTCATCCAAAAGAAGG
ATATGAAACAAGAACTATTAGGAGGGAAAgttgttgatatacgaattgaa
aattttgatcttGCATATGGCAGTAAAGTATTACTTCAAAACTGTAATTT
GGTCATGGCCTTTGGTCGAAGATACGGTTTTGTGGGTCGAAATGGAATGG
GAAAGACTACATTGTTAAGGGCTATTTCGAAACGTGAATTGTATATTCCG
TCACATGTCACAGTACTTCATGTAGAGCAAGAAGTTGTGGGGGATGAAAC
GCTTGCAACTGACAGCGTACTTGAGGCCGACACTGTCAgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050446-exon-scaffold_172-1491911889:1212..1388 | TCONS_00050446-exon-scaffold_172-1491911889:1212..1388 | Clytia hemisphaerica | exon |
| TCONS_00050446-exon-scaffold_172-1510915933:1212..1388 | TCONS_00050446-exon-scaffold_172-1510915933:1212..1388 | Clytia hemisphaerica | exon |
| TCONS_00050446-exon-scaffold_172-1575043694:1212..1388 | TCONS_00050446-exon-scaffold_172-1575043694:1212..1388 | Clytia hemisphaerica | exon |
| TCONS_00050446-exon-scaffold_172-1491911889:4304..4448 | TCONS_00050446-exon-scaffold_172-1491911889:4304..4448 | Clytia hemisphaerica | exon |
| TCONS_00050446-exon-scaffold_172-1510915933:4304..4448 | TCONS_00050446-exon-scaffold_172-1510915933:4304..4448 | Clytia hemisphaerica | exon |
| TCONS_00050446-exon-scaffold_172-1575043694:4304..4448 | TCONS_00050446-exon-scaffold_172-1575043694:4304..4448 | Clytia hemisphaerica | exon |
| TCONS_00050446-exon-scaffold_172-1491911889:8641..8791 | TCONS_00050446-exon-scaffold_172-1491911889:8641..8791 | Clytia hemisphaerica | exon |
| TCONS_00050446-exon-scaffold_172-1510915933:8641..8791 | TCONS_00050446-exon-scaffold_172-1510915933:8641..8791 | Clytia hemisphaerica | exon |
| TCONS_00050446-exon-scaffold_172-1575043694:8641..8791 | TCONS_00050446-exon-scaffold_172-1575043694:8641..8791 | Clytia hemisphaerica | exon |
| TCONS_00050446-exon-scaffold_172-1491911889:8990..9414 | TCONS_00050446-exon-scaffold_172-1491911889:8990..9414 | Clytia hemisphaerica | exon |
| TCONS_00050446-exon-scaffold_172-1510915933:8990..9414 | TCONS_00050446-exon-scaffold_172-1510915933:8990..9414 | Clytia hemisphaerica | exon |
| TCONS_00050446-exon-scaffold_172-1575043694:8990..9414 | TCONS_00050446-exon-scaffold_172-1575043694:8990..9414 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_172 | supercontig | scaffold_172:1212..9414 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016887 | ATPase activity |
| GO:0005524 | ATP binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0016887 |
ATPase activity |
| molecular_function |
GO:0005524 |
ATP binding |
Blast
BLAST of TCONS_00050446 vs. Swiss-Prot (Human)
Match: ABCF3 (ATP-binding cassette sub-family F member 3 OS=Homo sapiens GN=ABCF3 PE=1 SV=2) HSP 1 Score: 165.622 bits (418), Expect = 5.644e-46 Identity = 102/263 (38.78%), Postives = 160/263 (60.84%), Query Frame = 3
Query: 126 LHKKFPGIDEDLLNYVVDVTKTSAEDFEDAEEIYDAVGGVLHEAT-ENDDEDEIKEICNGIMNLIKGGEEEKPQQQVNGKRILDAPIHIGDRAKKDDEHQVEQNSIWMKQNVEDTTLKTVDLKKLERAEAXXXXXXXXXXXXXXXXXSSA----GPTTNQVIQKKDMKQELLG-GKVVDIRIENFDLAYGSKVLLQNCNLVMAFGRRYGFVGRNGMGKTTLLRAISKRELYIPSHVTVLHVEQEVVGDETLATDSVLEADTVR 896
L +FP ID + +YV V + + DFE +++ +AVG +L E + ++ D+ I+ +C + N ++ E PQ Q N + +LDAPI + + D + +Q+ TV+ KKLE+AEA+ K K E+R + D S+ + +Q +K+ + E G K D+RIENFD+++G +VLL ++ +A+GRRYG VGRNG+GKTTLL+ ++ R L +P+H+++LHVEQEV GD+T A SVLE+D+VR
Sbjct: 8 LRSEFPEIDGQVFDYVTGVLHSGSADFESVDDLVEAVGELLQEVSGDSKDDAGIRAVCQRMYNTLRLAE---PQSQGNSQVLLDAPIQLSKITENYDCGTKLPGLLKREQS------STVNAKKLEKAEARLKAKQEKRSEKDTLKTSNPLVLEEASASQAGSRKESRLESSGKNKSYDVRIENFDVSFGDRVLLAGADVNLAWGRRYGLVGRNGLGKTTLLKMLATRSLRVPAHISLLHVEQEVAGDDTPALQSVLESDSVR 261
The following BLAST results are available for this feature:
|
