TCONS_00050434 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050434
Unique NameTCONS_00050434
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1791

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050434 ID=TCONS_00050434|Name=TCONS_00050434|organism=Clytia hemisphaerica|type=transcript|length=1791bp
CTGTCATTTTGAGGagcgaaattcaaattcaatacaGCAATGGTATTAAT
TTGTTTCACCGACTTCTGCTTTGGACGGATCCCACTATGCACCACTACTT
TTTTGTctgaacgtttcaagcaaatagatacgctctttcaagcttttcag
attttaacaaaGCTTCTTTTGTACTTCTAAGCCTTCTAAGCCTtttgggc
tgactttccagcgcagctggtttatttcaaataatttttgttcAGTTTTT
TATCATGCAATCATATTTTTagagtatttcaattttttcaaatagttttt
gtTCAGTTTTTTATCATGCAATCatatttttaaagtatttgataTTTGCT
ACTGAAGTTCAAAGATAATTTACAACCAACCATCAGTTCTTGgttatttt
tatttcagagACCTCTTGATTTTGGATGTTACCTTGATTGGATAAATCAT
AATGATGAttctttggtatttttttcagtCAACCACAAAATAACACACAA
AGAAAGCAAAGAATTAAATAATTATAAAATGGGAAAAGAAGACAAAGCAG
TTCTCTCACACAGCGAAGGTGAAGAATCAGACAGCGAAAATGAGTTCTTG
GAGGAGAATGAACGTATTTTGGGTGAGGATGAACCAACCGAGAAGAGAGA
ATTGATCAACAACCAAGAATTGATGAAAGTAAGACTTGAAGAATTGAAGA
AAGAAATTGATTGGATTGAACGTATGGATGTGACGGTTGACCTCTCTGAT
TTGCCAGGTCTGAACCCGACAGATGAGACAGAGGATGAAAGCAAAAAGAC
AAATGGTACCAAAGAAGAAGTTGTGGATGACTTTCAACGAGAATTACAAT
TttatcgTCAAGCACAAGTATCAGCGAAAGAGGCTTTAAGTAAATTAAGA
GATATGGGTGTGCCTACAGAGAGACCGGAAGATTATTTTGCTGAAATGGT
CAAATCTGACGCACACATGCAAAAGATACGACAAAAAATGTTGAGTAAAA
AAGAATCTATCGAGAAATCTGAGAAGGCAAAGAAACAAAGAACactaaag
aaatatggaaaacAGATACAACACCAAGTGCTACAAAAAAGACAacaaga
taaaaagaaaatgcTACAGGCTGTCGATCACCTAAAAAAGAACAAAGGTA
AATTGGAGAAATTATCCGGCAAAGATGACATGTTCGATATTAACACTGGT
GACCGTAATCAAAACAAACAATCCGGAGGTTTAAAACGAAAACGTAAAGA
CGATAAGTTTGGTTTTggtggtcaaaagaaaaaattcaagaagaaTTCCG
CCCAAAGCTCCGCCAACGCCATGTCTGATTTCAAACGCAATGTTCACGGC
AAGAAANCAAAGCTCCGCCAACGCCATGTCTGATTTCAAACGCAATGTTC
ACAGCAAGAAATCTGGATCAGGGAAGCCAGGCGGTAAATCAAGAGGCGGT
AAACCACCACAGAAACGATTGGGAAAATCTCgtcgaaataaaaacaaaag
taagAACTAACGAACGAAGCAGAAAGTAGATTTATTTGAGGTGAAGGATC
GTGGACAGTATCTTGAAAAGTCGATAACGTCGAACCACCTCAATTGAGAA
ATTCACGGTATAAATATAAGTACGGTATAAATGGAtgcgaaaatcaaaaa
ttggatttgTTGGTTCCTTGGGAAATATAGCAAAGAAAATCTATCCTCTG
GGTGTCAAATAGGAATGAGATATTTTTATTGATGGACAAAGAACAGACGA
AAAGTTATTAGCTTTAAAATCGAAATCGACTTCCATATTGC
Run BLAST on NCBI

protein sequence of TCONS_00050434-protein

>TCONS_00050434-protein ID=TCONS_00050434-protein|Name=TCONS_00050434-protein|organism=Clytia hemisphaerica|type=polypeptide|length=284bp
MGKEDKAVLSHSEGEESDSENEFLEENERILGEDEPTEKRELINNQELMK
VRLEELKKEIDWIERMDVTVDLSDLPGLNPTDETEDESKKTNGTKEEVVD
DFQRELQFYRQAQVSAKEALSKLRDMGVPTERPEDYFAEMVKSDAHMQKI
RQKMLSKKESIEKSEKAKKQRTLKKYGKQIQHQVLQKRQQDKKKMLQAVD
HLKKNKGKLEKLSGKDDMFDINTGDRNQNKQSGGLKRKRKDDKFGFGGQK
KKFKKNSAQSSANAMSDFKRNVHGKKXKLRQRHV
Run BLAST on NCBI

transcript from alignment at scaffold_171:106913..114622-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050434 ID=TCONS_00050434|Name=TCONS_00050434|organism=Clytia hemisphaerica|type=transcript|length=7710bp|location=Sequence derived from alignment at scaffold_171:106913..114622- (Clytia hemisphaerica)
CTGTCATTTTGAGGAGCGAAATTCAAATTCAATACAGCAATGGTATTAAT
TTGTTTCACCGACTTCTGCTTTGGACGGATCCCACTATGCACCACTACTT
TTTTGTCTGAACGTTTCAAGCAAATAGATACGCTCTTTCAAGCTTTTCAG
ATTTTAACAAAGCTTCTTTTGTACTTCTAAGCCTTCTAAGCCTTTTGGGC
TGACTTTCCAGCGCAGCTGGTTTATTTCAAATAATTTTTGTTCAGTTTTT
TATCATGCAATCATATTTTTAGAGTATTTCAATTTTTTCAAATAGTTTTT
GTTCAGTTTTTTATCATGCAATCATATTTTTAAAGTATTTGATATTTGCT
ACTGAAGTTCAAAGATAATTTACAACCAACCATCAGTTCTTGGTTATTTT
TATTTCAGAGACCTCTTGATTTTGGATGTTACCTTGATTGGATAAATCAT
AATGATGATTCTTTGGTATTTTTTTCAGTCAACCACAAAATAACACACAA
AGAAAGCAAAGAATTAAATAATTATAAAATGGGAAAAGAAGACAAAGCAG
TTCTCTCACACAGCGAAGGTGAAGAATCAGACAGCGAAAATGAGGTTTGT
TTTTCTGCATTGTTTTTTCTATTGCTATCAACAACAAATGTCCAATGCGG
TCCAATTATCTTTTTCGATTGTATAAAGATTGAAGATTAAGTGGCACTTA
ACATGAAGATATTAGATAGTTTAGTAGTTTTTCTATTCCACACTTAAAGG
GCCTAATGTAATAAGATCCAAAAATGTCTAAAGTGAGTAGATAGTTTGAT
AGTTTTTTTTTTATTCAAGTTGCTTTTGTGTGTTGTCACATTTCTAAACT
TCAACTAAGAATCGGACTTGCTTATAAACTGGAGAATTTTTTCATAAATT
TGGTAAATATTTTATCTACAATAAATTAAAAATCAATATATGGCCTTTTT
CAGTTCTTGGAGGAGAATGAACGTATTTTGGGTGAGGATGAACCAACCGA
GAAGAGAGAATTGATCAACAACCAAGTAAGCCTTGTTTTTGTCTATTCTC
AGTTTTCTTAGTGTTCTGGAATGTTGGAATGTTTGATGTGAAGAACAAAA
AGCTAATGATGTAACAAGTTGGAATTTGTGTTTTAGATAGTCAAACAGTA
TAAGAAGAAAATTTTCTAAATACTATTCCCCCCTGGCTTTTGGATTTTTC
TCTCTCCTCTTCTTTTACCCCCCCCCCCCCCAGATTTACTCCAATTTTCT
GGAAAAATTGTTTTACAATATACCTATTTATCAGTGAATTTTCAATGTAC
TGTAACACACCATCATTATACTCAATGTTTTACTGTTCCTAAGGAATTGA
TGAAAGTAAGACTTGAAGAATTGAAGAAAGAAATTGATTGGATTGAACGT
ATGGATGTGACGGTTGACCTCTCTGATTTGCCAGGTAACTATGTTCAACT
GGATGATAAACCCCCTAGGCTATATAGTTTTAAGATATTTAAGGCTGCTT
AAAACTTTTTCCTGAATTGCAAAACTGCAAAGTTTTCTGTGCAAACTTAT
CCCTATTAATGTGGGTCAAGTAATTCTTAGGAGTCATCTGGTGTCTATGC
TATGCTGTTTGCTTTTTTCTCGATTCCCAGTTAATAGCTATATTTTGATA
TTTCAAAGGTTTGAATTAAATGTCAGACCTTTTGACCTCTGCTTCGCCCG
TATAGATTTGAAACATTTCCCTTTACATCAAGGTCTGAACCCGACAGATG
AGACAGAGGATGAAAGCAAAAAGACAAATGGTACCAAAGAAGAAGTTGTG
GATGACTTTCAACGAGAATTACAATTGTATGTACAGTTTTCTTAAAGTCC
TTCAATCTCAAATTTCAACCATTAGAAGAGTTGTAGGAAGAGTTACTGTA
TGAGATCGATTGTTTGAAATTACTACTTTGCTGGAGTACTCTTCAAATAA
CTCCACCTAATTTATGCACCCCCAACGTTTCCCCTTTTAACGAAAAAGGA
TCGGTTAATCTCCAAGCAGATTCCAATACTCCGCGCATGGCACTTATTCA
TTCTAAAGGCCATGGCTCCGTAAGAGATTCTGCCCAGGTTGGTGCACTGT
TTTGATCTTTTTCATGCAGTTTTGGGATTGAAAAACAATCAAAGCAAAAG
CGAAATAATTGCACCAAATCAAAACCCGATCATAAATATAAACATTAGAA
CCAAGTCGCTTTCGCTTTCGTTTTCAAGCAAAAGCAATGCAGTTTTGAAT
GTTATGACTGAAAAACCAGGTCAGATCGTCACATTTGCCATATCCACTAA
AATAGTCTTTAATCTTTAATCCTAAAACTTTCATATTCTTTTGTCAAGAA
TTTGTGTTCAGTATCCTCAATTTTTTTTCAGTTATCGTCAAGCACAAGTA
TCAGCGAAAGAGGCTTTAAGTAAATTAAGAGATATGGGTGTGCCTACAGA
GAGACCGGAAGATTATTTTGCTGAAATGGTCAAATCTGACGCACACATGC
AAAAGGTATTTTAGATTACACATTGAAAATTATTTACCAAGACCTATGGT
TTCCATTAATTCAAATGCAAATTTTTTGAACGAATGCTGCAAGGTACTTT
GAAGCTCTAAATAAATCATATCTCGCCATAGGCTTTAAAAGTGTACACTC
CTCAGTGCCGTGATATTGGGAGGGGCTGAGGTTTAATGAGGGAAATTTTG
AAAATTTACGTTCAAGATGGCCAGAAAATGCCCTCAAAATGAAATCAGAC
AATATATCTTTTTTTTATTTATAGAAGTTTATTTCTCTGGTCTATTGACC
TCTATGAAACAATCTTACATCTACAATTTATAGATCTTATCATTCCATTC
GCTTGTCAATTTTGTTAAAGAGTTTTACAGTTAGGCACCTGGGCCTCTAA
CCCACTCTTCTTACAATCATGTTGTTTCTGTCGTAAATTTCTTTAAATAG
AGTTTAGTCCTAGGACTACCTCTCACTTTCCATATATGACTCTTGTCTTT
TTCTTTCGATGTTTTTTCTTTTGCTTTATGATGCCATTGTTTTATTATTT
CCCGTTCTTTCCTTGAAAAATCGTCTGATACTCTGAAATTATCTTTATCT
AGTTTGTGGGTTGATGCATAAGTATTCTAATCCTTTCTTCTTCACTCTCG
AGAGTAACCTTTAATGGTCTCCATCGTTCATTTGTATACATTTCATCTTT
ACGAGCACCTATGCGTTCTACCTTGATTATCGTCACATCGAAACCCATTT
GTTGTTTCAGTACTTTTTCTATAAAATCTTTGTCACCAACTCGTTACTCT
TCTTCGTTTTCGTGCTTGTTTTGACCTTAATCATGCACCATGATGTTGCA
CTTGGTTGATTTGAGCCAACGCTCCTCTTCGTTCACTGATTTGATGAAAC
TTTTTGAGGTCATCTCTTCTTTTTGTAGATCTTCTTTGGTGACTTCTGCA
TATGATTATTTTTTTGTTTCTGTGTTGTAGAGCTGTGTTTCAGATCGTTT
TTTGTTCCGTTCTTTGTTGACGTCTTTTTTATTCATAAGCTTCTCGACTT
TCCTTTCTAGAGAGGTTATTCTCTCGTTGAAACCTAATTTCAATCCATGA
TGCATGGGTCGCGGCACCGGGGGGGCCACCCGGGCCTTGGCCCGACCACA
TTTTTTCAAAGTAAAAAGAAAATTTACCAATCAAACCAAATTTTGTCTAA
TAACGTTAAAACAAACCTGTTTTAGGTAATCCAGAAGGGGTAAAATTTTC
GCCCGTCGGCGCCAACCATGGTGGCGCCTCCTTCGTCAGTATATCATGGT
CCTATCACTTTCAAAGTGGAGCCGCGGCCCCTGTGATGTTCATCTTTATC
TGCTTGTTTTAATCCTCTCGAGAGTGGCGTTAATGTAACACAATTTCCAC
ATTCGAAGCGCGGGCTTTTCTATTGCAGACAAAGCTGAATCTGATAGGCC
GGGAGCTCAGAGCAAGCATAATTCTCAACTTCAGTTGAGCTAGAATCTGA
CAATGAATGTATGTGTGTGTGTATGTCTGTCCGAAAACTTTGGGGCAGGC
TGGAGACTTCAAAAATGATCGGGTTTGGCTGAAATTTGGCACACTTGTTC
CTTGGGTGAATATCTGGGGGTTTTTTTTCATTTTTTGAAAAATTTCATTT
TTAAGGGCGTGGTCACGAGTTTTCGCCAAAACGAGGCTAAAACTTTGGGG
CAGGCTGGAGACTTCAAAAATGATCGGATTTGGTTGAAATTTGGCACACT
TGTTCCTTGAGTGAATATCTGGGGGTGTTTTTTTGATTTTTTGAAAATTT
TCATTTTTAAGGGCGTGGTCACGAGTTTTCGCCAAAACGAGGCTAAAACT
TTGGGGCAGGCTGGAGACTCTAAAAATGATCGGGTTTGGCTGAAATTTGG
CACACTTGATACTTGGGCGAATCCCTTTGGGTGGTTTTTCATTTTTTTTA
AATTTCCATTTTAAGGGCGTGGTCAAGAGTTTTTAGTTGAAATTGGTTAC
AATTTTACAATTGGGCCTACGAATGATTTAAAAACACTGAAGTTGAGCCC
AGTGCGGTTAGCACGTTCGACAGTGGACAAGTCTATCACATCTCCTACAT
CATTATCTGCTTTGACGGTGTTTGTTAAACAGTTATTGGGTGTGCAATAT
CCATAATTTTATTGAATTTCCTTGTTAGAATTTTCGTTGATTTCCGCCAT
ATTGTTGCATTTTCAAGATCGTCTCAGAAACTTTATAAAAAATCTATTTC
TCAAAAGAGCACTCTATTCATCGCCAGTTCAATTTCTCTTTGATTCTTTT
TAGATACGACAAAAAATGTTGAGTAAAAAAGAATCTATCGAGAAATCTGA
GAAGGCAAAGAAACAAAGAACACTAAAGAAATATGGAAAACAGGTAGGAT
ACTCAAATTAGAATATTAATCTTGACATGAACTGTACAACTGTATTGAAA
AATTGGAATATTTTTTTTAATGATATATATTTCTGTTCTCTTCTTCTTGT
GTTTCTCTGCACAATTAAGAGTGCTCAATACATAAGTAGAGCTTGATATA
TTTCTGTTCTCTATATTTGCTGCTTCAACCTTTTACGTTTTCTATTTCTG
TTGTATTTTTAATTGTTTTTTTTGTACAGATACAACACCAAGTGCTACAA
AAAAGACAACAAGATAAAAAGAAAATGCTACAGGCTGTCGATCACCTAAA
AAAGAGTATGCAACACTTCAAACTTTTCAACCCTTGTCAACAGATTCTCA
CATAACGAATAACGAATTTCTTCAAGACATTTCGAAATGAATTTCTCCGC
AAAAAAATAAAACTTAAAGCTTTTCCTTTCAAGAGGAAGCACTCCTATCT
AAATGCAAAAAAAATTTCAAAGTACATACCTGGACATATATCCGGATATA
CAATCAAAATAAAATAGCCGCCTTCTTTCTCACCGTTCAACACATAATCG
AAAAAATTTTCCTTCGAAAATACAAGGGAATTTTTTCCATTTAAGAGAAT
ACACTAAATTTTCCTTCAAGAATACATGGAATTTCCCTACGAAAATACAA
GGAATTCTCCTAGGTAAATACAGGCAGTTTTCTTACGAAAGTACAAGAAA
TGTTCCTTCAAAAATAAATCGGAATTTGCCTACGAAAATTCGAGGAATTT
TCCTTCAAAAATAAAGGAATTTTTTTTACAAACATAAGCCATTTCTTCAA
AAATACAACGAATTTCCCTTAAAGGATAGCCGATAAACAAAGATACTTTT
CAAAACAGGGAATTTCGTTTCGAAAATTACTCAGGAGAGAGGTCTATTTT
AAGCAAACTCTCCTTTTGTTTGTAGACAAAGGTAAATTGGAGAAATTATC
CGGCAAAGATGACATGTTCGATATTAACACTGGTGACCGTAATCAAAACA
AGTGAGTAGGTTAATCGAATATTGGATTGAATTTGGTAGAGTTACATGAT
CTTTTTTAGAATTTAACATGATTTCATCATGTTATAATGTTAGACTTTTA
GACAACAGGGGTGTGAGAATGATAAGGAGAATTACGATTGAGTCACGGCC
TTAATTTGAATGTTTTTCTGACTCTAACGATGTTTTTCATCTCATTGCCG
CTTTGTTTTGTATTATTTCTCGATCTTGGCATTGTCGGACTCTCTATCAT
ACAGTTTGTTTAAATTAGTTTTTGAGATTTGCCTCGCATATTTCAAAATT
ATTTGATAGTGGAAGAATATTCATTCTTGACAACAAAACAGATTGCAATT
CAATGTCCTGATGTGAGAAGCAAACAGGTTAAGCAATTCTTGAGAACTGA
AAAATTTTAACGATTATGGACCCCTTCATTCACTCTCCTTTGTTCCTTAA
AGACGTTTCAAATTGATGAATGACTGAAAAATTTTAACGATTTCGTATTT
ATGTGACCTAATCTCTCTATCCCTTCCTTCTTTCAGACAATCCGGAGGTT
TAAAACGAAAACGTAAAGACGATAAGTTTGGTTTTGGTGGTCAAAAGAAA
AAATTCAAGAAGAATTCCGCCCAAAGCTCCGCCAACGCCATGTCTGATTT
CAAACGCAATGTTCACGGCAAGAAANCAAAGCTCCGCCAACGCCATGTCT
GATTTCAAACGCAATGTTCACAGCAAGAAATCTGGATCAGGGAAGCCAGT
GAGTTGAAATTGTTGAATGCCTCATGGTGTCTTTAGCTTGATATGCACAA
CTTTAATTCGATTAATTTTCACGAATCGGCAAAAATCAGTTGAAAAAGGC
CTTGAAAACATCATATTCCGTCAAAAATTGCACATTTACAGTGATAATCC
TGATAATCGCCCACGCGGACAATTACGTACGCTGTGTAACAATCCACCGA
TTCTCCTGAGCTCAGAAAGAAGGCCTTGAAAACATCATATTCCTTCAAAA
ATTGCAAATTTACAGTGTTTTTTTTCATGTCGCGATTTTATTGGAAACAG
TCTTATCACAGATACCTTATCTAAAACGCTATTATGGACACTTACTCTGT
CTTCCTCAAGCCAAGGCAAACGAAGGAAAATAATGCACCATCTCTGCTGA
GTAGACCACAGTTCACAAATCATAACAAAAAAACTAGTATTGCAGGAAAA
TAGGAGGCTAAAGGATGGTCTTAATTGATCAAATTGCCGACACTGAACTC
GGTAAAGATAACGCATTATTTTGCTTTAGTCAGGGGCAGAGCAGCTCCAT
CTAGTGTTCTCTTTAACATATCTACGGTCTGTATGTATGAACTATACAAG
AAATTTCCATTCGATTTCTTTGTAGGGCGGTAAATCAAGAGGCGGTAAAC
CACCACAGAAACGATTGGGAAAATCTCGTCGAAATAAAAACAAAAGTAAG
AACTAACGAACGAAGCAGAAAGTAGATTTATTTGAGGTGAAGGATCGTGG
ACAGTATCTTGAAAAGTCGATAACGTCGAACCACCTCAATTGAGAAATTC
ACGGTATAAATATAAGTACGGTATAAATGGATGCGAAAATCAAAAATTGG
ATTTGTTGGTTCCTTGGGAAATATAGCAAAGAAAATCTATCCTCTGGGTG
TCAAATAGGTTTGCTAAACAAGCTTTATTCTATCATGCTATTTTATCAAG
GAAATTGTTTTTGTAAACTTCATTTTTATAGGAATGAGATATTTTTATTG
ATGGACAAAGAACAGACGAAAAGTTATTAGCTTTAAAATCGAAATCGACT
TCCATATTGC

Coding sequence (CDS) from alignment at scaffold_171:106913..114622-

>TCONS_00050434 ID=TCONS_00050434|Name=TCONS_00050434|organism=Clytia hemisphaerica|type=CDS|length=7695bp|location=Sequence derived from alignment at scaffold_171:106913..114622- (Clytia hemisphaerica)
ACAATCCGGAGGTTTAAAACGAAAACGTAAAGACGATAAGTTTGGTTTTG
GTGGTCAAAAGAAAAAATTCAAGAAGAATTCCGCCCAAAGCTCCGCCAAC
GCCATGTCTGATTTCAAACGCAATGTTCACGGCAAGAAANCAAAGCTCCG
CCAACGCCATGTCTGAACAAAGGTAAATTGGAGAAATTATCCGGCAAAGA
TGACATGTTCGATATTAACACTGGTGACCGTAATCAAAACAAATACAACA
CCAAGTGCTACAAAAAAGACAACAAGATAAAAAGAAAATGCTACAGGCTG
TCGATCACCTAAAAAAGAATACGACAAAAAATGTTGAGTAAAAAAGAATC
TATCGAGAAATCTGAGAAGGCAAAGAAACAAAGAACACTAAAGAAATATG
GAAAACAGTTATCGTCAAGCACAAGTATCAGCGAAAGAGGCTTTAAGTAA
ATTAAGAGATATGGGTGTGCCTACAGAGAGACCGGAAGATTATTTTGCTG
AAATGGTCAAATCTGACGCACACATGCAAAAGGTCTGAACCCGACAGATG
AGACAGAGGATGAAAGCAAAAAGACAAATGGTACCAAAGAAGAAGTTGTG
GATGACTTTCAACGAGAATTACAATTGAATTGATGAAAGTAAGACTTGAA
GAATTGAAGAAAGAAATTGATTGGATTGAACGTATGGATGTGACGGTTGA
CCTCTCTGATTTGCCAGTTCTTGGAGGAGAATGAACGTATTTTGGGTGAG
GATGAACCAACCGAGAAGAGAGAATTGATCAACAACCAAATGGGAAAAGA
AGACAAAGCAGTTCTCTCACACAGCGAAGGTGAAGAATCAGACAGCGAAA
ATGAGACAATCCGGAGGTTTAAAACGAAAACGTAAAGACGATAAGTTTGG
TTTTGGTGGTCAAAAGAAAAAATTCAAGAAGAATTCCGCCCAAAGCTCCG
CCAACGCCATGTCTGATTTCAAACGCAATGTTCACGGCAAGAAANCAAAG
CTCCGCCAACGCCATGTCTGAACAAAGGTAAATTGGAGAAATTATCCGGC
AAAGATGACATGTTCGATATTAACACTGGTGACCGTAATCAAAACAAATA
CAACACCAAGTGCTACAAAAAAGACAACAAGATAAAAAGAAAATGCTACA
GGCTGTCGATCACCTAAAAAAGAATACGACAAAAAATGTTGAGTAAAAAA
GAATCTATCGAGAAATCTGAGAAGGCAAAGAAACAAAGAACACTAAAGAA
ATATGGAAAACAGTTATCGTCAAGCACAAGTATCAGCGAAAGAGGCTTTA
AGTAAATTAAGAGATATGGGTGTGCCTACAGAGAGACCGGAAGATTATTT
TGCTGAAATGGTCAAATCTGACGCACACATGCAAAAGGTCTGAACCCGAC
AGATGAGACAGAGGATGAAAGCAAAAAGACAAATGGTACCAAAGAAGAAG
TTGTGGATGACTTTCAACGAGAATTACAATTGAATTGATGAAAGTAAGAC
TTGAAGAATTGAAGAAAGAAATTGATTGGATTGAACGTATGGATGTGACG
GTTGACCTCTCTGATTTGCCAGTTCTTGGAGGAGAATGAACGTATTTTGG
GTGAGGATGAACCAACCGAGAAGAGAGAATTGATCAACAACCAAATGGGA
AAAGAAGACAAAGCAGTTCTCTCACACAGCGAAGGTGAAGAATCAGACAG
CGAAAATGAGACAATCCGGAGGTTTAAAACGAAAACGTAAAGACGATAAG
TTTGGTTTTGGTGGTCAAAAGAAAAAATTCAAGAAGAATTCCGCCCAAAG
CTCCGCCAACGCCATGTCTGATTTCAAACGCAATGTTCACGGCAAGAAAN
CAAAGCTCCGCCAACGCCATGTCTGAACAAAGGTAAATTGGAGAAATTAT
CCGGCAAAGATGACATGTTCGATATTAACACTGGTGACCGTAATCAAAAC
AAATACAACACCAAGTGCTACAAAAAAGACAACAAGATAAAAAGAAAATG
CTACAGGCTGTCGATCACCTAAAAAAGAATACGACAAAAAATGTTGAGTA
AAAAAGAATCTATCGAGAAATCTGAGAAGGCAAAGAAACAAAGAACACTA
AAGAAATATGGAAAACAGTTATCGTCAAGCACAAGTATCAGCGAAAGAGG
CTTTAAGTAAATTAAGAGATATGGGTGTGCCTACAGAGAGACCGGAAGAT
TATTTTGCTGAAATGGTCAAATCTGACGCACACATGCAAAAGGTCTGAAC
CCGACAGATGAGACAGAGGATGAAAGCAAAAAGACAAATGGTACCAAAGA
AGAAGTTGTGGATGACTTTCAACGAGAATTACAATTGAATTGATGAAAGT
AAGACTTGAAGAATTGAAGAAAGAAATTGATTGGATTGAACGTATGGATG
TGACGGTTGACCTCTCTGATTTGCCAGTTCTTGGAGGAGAATGAACGTAT
TTTGGGTGAGGATGAACCAACCGAGAAGAGAGAATTGATCAACAACCAAA
TGGGAAAAGAAGACAAAGCAGTTCTCTCACACAGCGAAGGTGAAGAATCA
GACAGCGAAAATGAGACAATCCGGAGGTTTAAAACGAAAACGTAAAGACG
ATAAGTTTGGTTTTGGTGGTCAAAAGAAAAAATTCAAGAAGAATTCCGCC
CAAAGCTCCGCCAACGCCATGTCTGATTTCAAACGCAATGTTCACGGCAA
GAAANCAAAGCTCCGCCAACGCCATGTCTGAACAAAGGTAAATTGGAGAA
ATTATCCGGCAAAGATGACATGTTCGATATTAACACTGGTGACCGTAATC
AAAACAAATACAACACCAAGTGCTACAAAAAAGACAACAAGATAAAAAGA
AAATGCTACAGGCTGTCGATCACCTAAAAAAGAATACGACAAAAAATGTT
GAGTAAAAAAGAATCTATCGAGAAATCTGAGAAGGCAAAGAAACAAAGAA
CACTAAAGAAATATGGAAAACAGTTATCGTCAAGCACAAGTATCAGCGAA
AGAGGCTTTAAGTAAATTAAGAGATATGGGTGTGCCTACAGAGAGACCGG
AAGATTATTTTGCTGAAATGGTCAAATCTGACGCACACATGCAAAAGGTC
TGAACCCGACAGATGAGACAGAGGATGAAAGCAAAAAGACAAATGGTACC
AAAGAAGAAGTTGTGGATGACTTTCAACGAGAATTACAATTGAATTGATG
AAAGTAAGACTTGAAGAATTGAAGAAAGAAATTGATTGGATTGAACGTAT
GGATGTGACGGTTGACCTCTCTGATTTGCCAGTTCTTGGAGGAGAATGAA
CGTATTTTGGGTGAGGATGAACCAACCGAGAAGAGAGAATTGATCAACAA
CCAAATGGGAAAAGAAGACAAAGCAGTTCTCTCACACAGCGAAGGTGAAG
AATCAGACAGCGAAAATGAGACAATCCGGAGGTTTAAAACGAAAACGTAA
AGACGATAAGTTTGGTTTTGGTGGTCAAAAGAAAAAATTCAAGAAGAATT
CCGCCCAAAGCTCCGCCAACGCCATGTCTGATTTCAAACGCAATGTTCAC
GGCAAGAAANCAAAGCTCCGCCAACGCCATGTCTGAACAAAGGTAAATTG
GAGAAATTATCCGGCAAAGATGACATGTTCGATATTAACACTGGTGACCG
TAATCAAAACAAATACAACACCAAGTGCTACAAAAAAGACAACAAGATAA
AAAGAAAATGCTACAGGCTGTCGATCACCTAAAAAAGAATACGACAAAAA
ATGTTGAGTAAAAAAGAATCTATCGAGAAATCTGAGAAGGCAAAGAAACA
AAGAACACTAAAGAAATATGGAAAACAGTTATCGTCAAGCACAAGTATCA
GCGAAAGAGGCTTTAAGTAAATTAAGAGATATGGGTGTGCCTACAGAGAG
ACCGGAAGATTATTTTGCTGAAATGGTCAAATCTGACGCACACATGCAAA
AGGTCTGAACCCGACAGATGAGACAGAGGATGAAAGCAAAAAGACAAATG
GTACCAAAGAAGAAGTTGTGGATGACTTTCAACGAGAATTACAATTGAAT
TGATGAAAGTAAGACTTGAAGAATTGAAGAAAGAAATTGATTGGATTGAA
CGTATGGATGTGACGGTTGACCTCTCTGATTTGCCAGTTCTTGGAGGAGA
ATGAACGTATTTTGGGTGAGGATGAACCAACCGAGAAGAGAGAATTGATC
AACAACCAAATGGGAAAAGAAGACAAAGCAGTTCTCTCACACAGCGAAGG
TGAAGAATCAGACAGCGAAAATGAGACAATCCGGAGGTTTAAAACGAAAA
CGTAAAGACGATAAGTTTGGTTTTGGTGGTCAAAAGAAAAAATTCAAGAA
GAATTCCGCCCAAAGCTCCGCCAACGCCATGTCTGATTTCAAACGCAATG
TTCACGGCAAGAAANCAAAGCTCCGCCAACGCCATGTCTGAACAAAGGTA
AATTGGAGAAATTATCCGGCAAAGATGACATGTTCGATATTAACACTGGT
GACCGTAATCAAAACAAATACAACACCAAGTGCTACAAAAAAGACAACAA
GATAAAAAGAAAATGCTACAGGCTGTCGATCACCTAAAAAAGAATACGAC
AAAAAATGTTGAGTAAAAAAGAATCTATCGAGAAATCTGAGAAGGCAAAG
AAACAAAGAACACTAAAGAAATATGGAAAACAGTTATCGTCAAGCACAAG
TATCAGCGAAAGAGGCTTTAAGTAAATTAAGAGATATGGGTGTGCCTACA
GAGAGACCGGAAGATTATTTTGCTGAAATGGTCAAATCTGACGCACACAT
GCAAAAGGTCTGAACCCGACAGATGAGACAGAGGATGAAAGCAAAAAGAC
AAATGGTACCAAAGAAGAAGTTGTGGATGACTTTCAACGAGAATTACAAT
TGAATTGATGAAAGTAAGACTTGAAGAATTGAAGAAAGAAATTGATTGGA
TTGAACGTATGGATGTGACGGTTGACCTCTCTGATTTGCCAGTTCTTGGA
GGAGAATGAACGTATTTTGGGTGAGGATGAACCAACCGAGAAGAGAGAAT
TGATCAACAACCAAATGGGAAAAGAAGACAAAGCAGTTCTCTCACACAGC
GAAGGTGAAGAATCAGACAGCGAAAATGAGACAATCCGGAGGTTTAAAAC
GAAAACGTAAAGACGATAAGTTTGGTTTTGGTGGTCAAAAGAAAAAATTC
AAGAAGAATTCCGCCCAAAGCTCCGCCAACGCCATGTCTGATTTCAAACG
CAATGTTCACGGCAAGAAANCAAAGCTCCGCCAACGCCATGTCTGAACAA
AGGTAAATTGGAGAAATTATCCGGCAAAGATGACATGTTCGATATTAACA
CTGGTGACCGTAATCAAAACAAATACAACACCAAGTGCTACAAAAAAGAC
AACAAGATAAAAAGAAAATGCTACAGGCTGTCGATCACCTAAAAAAGAAT
ACGACAAAAAATGTTGAGTAAAAAAGAATCTATCGAGAAATCTGAGAAGG
CAAAGAAACAAAGAACACTAAAGAAATATGGAAAACAGTTATCGTCAAGC
ACAAGTATCAGCGAAAGAGGCTTTAAGTAAATTAAGAGATATGGGTGTGC
CTACAGAGAGACCGGAAGATTATTTTGCTGAAATGGTCAAATCTGACGCA
CACATGCAAAAGGTCTGAACCCGACAGATGAGACAGAGGATGAAAGCAAA
AAGACAAATGGTACCAAAGAAGAAGTTGTGGATGACTTTCAACGAGAATT
ACAATTGAATTGATGAAAGTAAGACTTGAAGAATTGAAGAAAGAAATTGA
TTGGATTGAACGTATGGATGTGACGGTTGACCTCTCTGATTTGCCAGTTC
TTGGAGGAGAATGAACGTATTTTGGGTGAGGATGAACCAACCGAGAAGAG
AGAATTGATCAACAACCAAATGGGAAAAGAAGACAAAGCAGTTCTCTCAC
ACAGCGAAGGTGAAGAATCAGACAGCGAAAATGAGACAATCCGGAGGTTT
AAAACGAAAACGTAAAGACGATAAGTTTGGTTTTGGTGGTCAAAAGAAAA
AATTCAAGAAGAATTCCGCCCAAAGCTCCGCCAACGCCATGTCTGATTTC
AAACGCAATGTTCACGGCAAGAAANCAAAGCTCCGCCAACGCCATGTCTG
AACAAAGGTAAATTGGAGAAATTATCCGGCAAAGATGACATGTTCGATAT
TAACACTGGTGACCGTAATCAAAACAAATACAACACCAAGTGCTACAAAA
AAGACAACAAGATAAAAAGAAAATGCTACAGGCTGTCGATCACCTAAAAA
AGAATACGACAAAAAATGTTGAGTAAAAAAGAATCTATCGAGAAATCTGA
GAAGGCAAAGAAACAAAGAACACTAAAGAAATATGGAAAACAGTTATCGT
CAAGCACAAGTATCAGCGAAAGAGGCTTTAAGTAAATTAAGAGATATGGG
TGTGCCTACAGAGAGACCGGAAGATTATTTTGCTGAAATGGTCAAATCTG
ACGCACACATGCAAAAGGTCTGAACCCGACAGATGAGACAGAGGATGAAA
GCAAAAAGACAAATGGTACCAAAGAAGAAGTTGTGGATGACTTTCAACGA
GAATTACAATTGAATTGATGAAAGTAAGACTTGAAGAATTGAAGAAAGAA
ATTGATTGGATTGAACGTATGGATGTGACGGTTGACCTCTCTGATTTGCC
AGTTCTTGGAGGAGAATGAACGTATTTTGGGTGAGGATGAACCAACCGAG
AAGAGAGAATTGATCAACAACCAAATGGGAAAAGAAGACAAAGCAGTTCT
CTCACACAGCGAAGGTGAAGAATCAGACAGCGAAAATGAGACAATCCGGA
GGTTTAAAACGAAAACGTAAAGACGATAAGTTTGGTTTTGGTGGTCAAAA
GAAAAAATTCAAGAAGAATTCCGCCCAAAGCTCCGCCAACGCCATGTCTG
ATTTCAAACGCAATGTTCACGGCAAGAAANCAAAGCTCCGCCAACGCCAT
GTCTGAACAAAGGTAAATTGGAGAAATTATCCGGCAAAGATGACATGTTC
GATATTAACACTGGTGACCGTAATCAAAACAAATACAACACCAAGTGCTA
CAAAAAAGACAACAAGATAAAAAGAAAATGCTACAGGCTGTCGATCACCT
AAAAAAGAATACGACAAAAAATGTTGAGTAAAAAAGAATCTATCGAGAAA
TCTGAGAAGGCAAAGAAACAAAGAACACTAAAGAAATATGGAAAACAGTT
ATCGTCAAGCACAAGTATCAGCGAAAGAGGCTTTAAGTAAATTAAGAGAT
ATGGGTGTGCCTACAGAGAGACCGGAAGATTATTTTGCTGAAATGGTCAA
ATCTGACGCACACATGCAAAAGGTCTGAACCCGACAGATGAGACAGAGGA
TGAAAGCAAAAAGACAAATGGTACCAAAGAAGAAGTTGTGGATGACTTTC
AACGAGAATTACAATTGAATTGATGAAAGTAAGACTTGAAGAATTGAAGA
AAGAAATTGATTGGATTGAACGTATGGATGTGACGGTTGACCTCTCTGAT
TTGCCAGTTCTTGGAGGAGAATGAACGTATTTTGGGTGAGGATGAACCAA
CCGAGAAGAGAGAATTGATCAACAACCAAATGGGAAAAGAAGACAAAGCA
GTTCTCTCACACAGCGAAGGTGAAGAATCAGACAGCGAAAATGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031936XLOC_031936Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050434-exon-scaffold_171-1575043694:114029..114622TCONS_00050434-exon-scaffold_171-1575043694:114029..114622Clytia hemisphaericaexon
TCONS_00050434-exon-scaffold_171-1575043694:113598..113669TCONS_00050434-exon-scaffold_171-1575043694:113598..113669Clytia hemisphaericaexon
TCONS_00050434-exon-scaffold_171-1575043694:113189..113279TCONS_00050434-exon-scaffold_171-1575043694:113189..113279Clytia hemisphaericaexon
TCONS_00050434-exon-scaffold_171-1575043694:112797..112890TCONS_00050434-exon-scaffold_171-1575043694:112797..112890Clytia hemisphaericaexon
TCONS_00050434-exon-scaffold_171-1575043694:112118..112241TCONS_00050434-exon-scaffold_171-1575043694:112118..112241Clytia hemisphaericaexon
TCONS_00050434-exon-scaffold_171-1575043694:109730..109819TCONS_00050434-exon-scaffold_171-1575043694:109730..109819Clytia hemisphaericaexon
TCONS_00050434-exon-scaffold_171-1575043694:109418..109493TCONS_00050434-exon-scaffold_171-1575043694:109418..109493Clytia hemisphaericaexon
TCONS_00050434-exon-scaffold_171-1575043694:108722..108797TCONS_00050434-exon-scaffold_171-1575043694:108722..108797Clytia hemisphaericaexon
TCONS_00050434-exon-scaffold_171-1575043694:107975..108186TCONS_00050434-exon-scaffold_171-1575043694:107975..108186Clytia hemisphaericaexon
TCONS_00050434-exon-scaffold_171-1575043694:107065..107347TCONS_00050434-exon-scaffold_171-1575043694:107065..107347Clytia hemisphaericaexon
TCONS_00050434-exon-scaffold_171-1575043694:106913..106991TCONS_00050434-exon-scaffold_171-1575043694:106913..106991Clytia hemisphaericaexon
TCONS_00050434-exon-scaffold_171-1510915933:114029..114622TCONS_00050434-exon-scaffold_171-1510915933:114029..114622Clytia hemisphaericaexon
TCONS_00050434-exon-scaffold_171-1510915933:113598..113669TCONS_00050434-exon-scaffold_171-1510915933:113598..113669Clytia hemisphaericaexon
TCONS_00050434-exon-scaffold_171-1510915933:113189..113279TCONS_00050434-exon-scaffold_171-1510915933:113189..113279Clytia hemisphaericaexon
TCONS_00050434-exon-scaffold_171-1510915933:112797..112890TCONS_00050434-exon-scaffold_171-1510915933:112797..112890Clytia hemisphaericaexon
TCONS_00050434-exon-scaffold_171-1510915933:112118..112241TCONS_00050434-exon-scaffold_171-1510915933:112118..112241Clytia hemisphaericaexon
TCONS_00050434-exon-scaffold_171-1510915933:109730..109819TCONS_00050434-exon-scaffold_171-1510915933:109730..109819Clytia hemisphaericaexon
TCONS_00050434-exon-scaffold_171-1510915933:109418..109493TCONS_00050434-exon-scaffold_171-1510915933:109418..109493Clytia hemisphaericaexon
TCONS_00050434-exon-scaffold_171-1510915933:108722..108797TCONS_00050434-exon-scaffold_171-1510915933:108722..108797Clytia hemisphaericaexon
TCONS_00050434-exon-scaffold_171-1510915933:107975..108186TCONS_00050434-exon-scaffold_171-1510915933:107975..108186Clytia hemisphaericaexon
TCONS_00050434-exon-scaffold_171-1510915933:107065..107347TCONS_00050434-exon-scaffold_171-1510915933:107065..107347Clytia hemisphaericaexon
TCONS_00050434-exon-scaffold_171-1510915933:106913..106991TCONS_00050434-exon-scaffold_171-1510915933:106913..106991Clytia hemisphaericaexon
TCONS_00050434-exon-scaffold_171-1491911889:114029..114622TCONS_00050434-exon-scaffold_171-1491911889:114029..114622Clytia hemisphaericaexon
TCONS_00050434-exon-scaffold_171-1491911889:113598..113669TCONS_00050434-exon-scaffold_171-1491911889:113598..113669Clytia hemisphaericaexon
TCONS_00050434-exon-scaffold_171-1491911889:113189..113279TCONS_00050434-exon-scaffold_171-1491911889:113189..113279Clytia hemisphaericaexon
TCONS_00050434-exon-scaffold_171-1491911889:112797..112890TCONS_00050434-exon-scaffold_171-1491911889:112797..112890Clytia hemisphaericaexon
TCONS_00050434-exon-scaffold_171-1491911889:112118..112241TCONS_00050434-exon-scaffold_171-1491911889:112118..112241Clytia hemisphaericaexon
TCONS_00050434-exon-scaffold_171-1491911889:109730..109819TCONS_00050434-exon-scaffold_171-1491911889:109730..109819Clytia hemisphaericaexon
TCONS_00050434-exon-scaffold_171-1491911889:109418..109493TCONS_00050434-exon-scaffold_171-1491911889:109418..109493Clytia hemisphaericaexon
TCONS_00050434-exon-scaffold_171-1491911889:108722..108797TCONS_00050434-exon-scaffold_171-1491911889:108722..108797Clytia hemisphaericaexon
TCONS_00050434-exon-scaffold_171-1491911889:107975..108186TCONS_00050434-exon-scaffold_171-1491911889:107975..108186Clytia hemisphaericaexon
TCONS_00050434-exon-scaffold_171-1491911889:107065..107347TCONS_00050434-exon-scaffold_171-1491911889:107065..107347Clytia hemisphaericaexon
TCONS_00050434-exon-scaffold_171-1491911889:106913..106991TCONS_00050434-exon-scaffold_171-1491911889:106913..106991Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050434-proteinTCONS_00050434-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_171supercontigscaffold_171:106913..114622 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
50.9462	51.1413	16.3675	12.9793	79.4163	61.4892	67.1786	64.9078	52.4778	44.31	45.3026	46.7912	54.5802	63.2225	50.5229	51.3863	44.3385	49.3407	15.4658	17.4426	54.2209	50.0298	59.5075	53.9897	68.7409	72.8438	20.4134	23.6946	29.8897	37.5159
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008610Ebp2
Blast
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BLAST of TCONS_00050434 vs. Swiss-Prot (Human)
Match: EBP2 (Probable rRNA-processing protein EBP2 OS=Homo sapiens GN=EBNA1BP2 PE=1 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 2.889e-33
Identity = 83/198 (41.92%), Postives = 123/198 (62.12%), Query Frame = 1 
Query:  646 RELINNQELMKVRLEELKKEIDWIERMDVTVDLSDLPGLNPTDETEDESKKTNGTKEEVVDDFQRELQFYRQAQVSAKEALSKLRDMGVPTERPEDYFAEMVKSDAHMQKIRQKMLXXXXXXXXXXXXXXQRTLKKYGKQIQHQVLQKRQQDKKKMLQAVDHLKKNKGKLEKLSGKDDMFDINTGDRN---QNKQSGG 1230
            ++ +N+   +K  L E K++++W+ER+DVT  L  +P +  ++    ++K       E  DDFQRE+ FYRQAQ +    L +L  + VPT+RP DYFAEM KSD  MQKIRQK+ +K+ ++E+SEKAK+ R L+KYGK++Q +VLQKRQQ+K  M+ A+   +K         G  D  D   GD+    Q K++G 
Sbjct:   44 KKAVNDVNGLKQCLAEFKRDLEWVERLDVT--LGPVPEIGGSEAPAPQNKDQKAVDPE--DDFQREMSFYRQAQAAVLAVLPRLHQLKVPTKRPTDYFAEMAKSDLQMQKIRQKLQTKQAAMERSEKAKQLRALRKYGKKVQTEVLQKRQQEKAHMMNAIKKYQK---------GFSDKLDFLEGDQKPLAQRKKAGA 228
The following BLAST results are available for this feature:
BLAST of TCONS_00050434 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EBP22.889e-3341.92Probable rRNA-processing protein EBP2 OS=Homo sapi... [more]
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