TCONS_00050429 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050429
Unique NameTCONS_00050429
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1081

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050429 ID=TCONS_00050429|Name=TCONS_00050429|organism=Clytia hemisphaerica|type=transcript|length=1081bp
aatttgtttatttcCAGCAACAATGAATtagacaaaaatacaaaaaaaca
aaatgggaAATACATCTTCAACAACTCCAACTGAGGAAATTGCGGCAAAA
CCAAGACCAGAAGATCAGCGTGACTATCCACGTACCGGTCCCTCTGCACC
TACAGAATGTCCAATGCATACCTCAAACCCTGATAAAACAGCACCAAGTA
CTGTTACAGCAAAGCAGGTGATCCCATCAGAATGTCCGATGCACGCATCA
AATGTCGACAAACCGAAAGTTGAATCTAAACCAATTCCAAGTGACTGTCC
AATGCATGCATCAAATGTGGATGGTAATAAAGAAAATGAGCTGGACCCGA
CAAACATGATGCCACCAGCAAATCAAAGACCATCTCCAGGACAACCTTTC
TTATTGAACATCAATCGACAAACTTCAACCATCCCTCGAGGCGGTGAGGA
TCACGTTGGCAAGAATTGGCAGTATCCTTCAGAACAAATGTTCTGGAATG
CTATGCTGCGGAAAGGTTGGCGATGGGATAAAGACGCTTTATCACAACAA
GACATGTCACATATCATTCGTATTCACAACACAAATAATGAACGTGCGTG
GGATGAAATTATGATGTGGGAAGCTTTCCATCCcgAATGTGAGCAACCCA
AACTATTGAAGTTTGGTGGGCGAGCCAAAGATTATTCACCCAGAGCAAGA
TTCAGAGCTTTGATGGGCAATGATTTACCATTTGATCGGCACGATTGGAT
TATAGACCGCAATGGAAAACCCGTCAGATACATTATAGATTATTATGATA
TTGGTGACGAGAATGGTTACAAAACTGGAGAATTCGTTGAACTTGATGTA
CGACCAGCTTTTGACTCTTTCGGTGCAGCTTTTGACCGTTCTCGTGTTGC
TATGTTACGGAAAGCAGCTGGTGTTTACCAATGGTGGAAAGGTGCACCAG
AAGAACAAGCTTTACCACCAGCAAGTAGTGAAACCTCATGATATCTCTTT
TATAgagtttgttgaatttttttgaaaagtttcgaTTGTTTAATTGGTGA
TTGCTGCGCAGTTTGTCACGACATGGAAATC
Run BLAST on NCBI

protein sequence of TCONS_00050429-protein

>TCONS_00050429-protein ID=TCONS_00050429-protein|Name=TCONS_00050429-protein|organism=Clytia hemisphaerica|type=polypeptide|length=312bp
MGNTSSTTPTEEIAAKPRPEDQRDYPRTGPSAPTECPMHTSNPDKTAPST
VTAKQVIPSECPMHASNVDKPKVESKPIPSDCPMHASNVDGNKENELDPT
NMMPPANQRPSPGQPFLLNINRQTSTIPRGGEDHVGKNWQYPSEQMFWNA
MLRKGWRWDKDALSQQDMSHIIRIHNTNNERAWDEIMMWEAFHPECEQPK
LLKFGGRAKDYSPRARFRALMGNDLPFDRHDWIIDRNGKPVRYIIDYYDI
GDENGYKTGEFVELDVRPAFDSFGAAFDRSRVAMLRKAAGVYQWWKGAPE
EQALPPASSETS
Run BLAST on NCBI

transcript from alignment at scaffold_171:62406..67255-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050429 ID=TCONS_00050429|Name=TCONS_00050429|organism=Clytia hemisphaerica|type=transcript|length=4850bp|location=Sequence derived from alignment at scaffold_171:62406..67255- (Clytia hemisphaerica)
AATTTGTTTATTTCCAGCAACAATGAATTAGACAAAAATACAAAAAAACA
AAATGGGAAATACATCTTCAACAACTCCAACTGAGGAAATTGCGGCAAAA
CCAAGACCAGAAGATCAGCGTGACTATCCACGTACCGGTCCCTCTGCACC
TACAGAATGTCCAATGCATACCTCAAACCCTGATAAAACAGCACCAAGTA
CTGTTACAGCAAAGCAGGTGATCCCATCAGAATGTCCGATGCACGCATCA
AATGTCGACAAACCGAAAGTTGAATCTAAACCAATTCCAAGTGACTGTCC
AATGCATGCATCAAATGTGGATGGTAATAAAGAAAATGAGCTGGACCCGA
CAAACATGGTACCATTTATTAAATGAATTACAACACTGACCTTTATATAT
CCCTGGAGCTATATCTGCCATCTTTGATCGAAGTGTTTTTTTACAAGTGG
CACCCACAAAGAGGCCATTGCAGTGTTAAAAATTAACGGCATATGGTGCT
ACATCTACAAAAGTATTGGACGAAAAGTAGATCTAGCGCTCTAGATGCAT
TTACACTGCTATTGAATAACACTACCATTAGGGTACCACTTTCAAAAAAC
ACCGACCAAAGATTTTGCTTGGTAGGGATTGAGAAACTTGGTCCAGGGTA
TATGAAAGTCAGTGGTTTACACCTTGCATTAAAATCTAGATAGATTTTTC
AAATGTGAACAAGACCTGATGATGAAGTAGCCCTGATGATGAAGTTGTCT
GCCTGTTAGTATTTTTAAACATAAATGAGTTCGCAGTTACTGTGTCTTCA
TAGAATTATTTTTGTTAGTTTATAAGATTACAAACTACACCCAAGCAAAA
GCTCTTTCAAATTTAAGGTCACTGAACTAACTTTCTAAACCTCTTGTTAG
AACTTTTCCAAACAAACTTTTTGCTCAATCTTACTTGAGCAAGTCAAGTT
GTATGAGTAAGTTTGAATATGTCAAGTTGGCTTTAGACGGCTTAAAGCTT
TTTCATGTTCCTTGTTTTATGTAACGTTGACACCATTACGAAAGCAAATA
TTTGGCAAGTATCTCTTCGGGGGTTCGATAGTAAAATCTCAGACATATAT
GAGTAGTAAAAGGATTTTTACGAATTTTTACATACCACCACCCAGACTCT
TGGAAGAGGTATTTTAGTAAACTGTAGTACTACCCTGGTAGTAAAAGTTT
TTGGGACAATTTGTCATGGAGATCATTGCTTTTCGGAATTTACAAAAAAA
GCTAAAAAATGATTAATTCTGTGACACATTTTTCACTTAGTGCAAAAAAT
AATGTTTTGCTCTTAGAATTAAAGTCTTTTTTATATTGACAAAGAAATTT
GACAATTTTTTGTTTGCAGCAAACAACTTTCCAACAGAAAACTTTTTCAA
ATTGTAAGAATTTTCAGATTTTTTCAGAAAAGTCATCCAAAAAATTAAAA
GAATTACCAAAATAGCTATAATTTGCTAATTTTACCAGTTTTAACTAACC
AGGTAGTAAAATTTTTCAACATTTAACACATAGATACCACCCATTTTAGT
ATTTAATACCCTTGGTAGTAAATTTTTTTTCGATTTTTCGTTACAACACC
ACCGTAGTAAACGTCATTATGTCTGAGATTTTACTACCGACCCCCCCCCC
TGTCTCTTCCACAGATAGGAACATTTCCTTCCATAATGGTAGAAATAATC
AAAAGTAAGAAATCTTATTTTGTCTAGATTCTCATTGATAGAGAAGAGTC
CTTGCTTTTGAAACTTGAATCATCAATCTTAAGTTGTGTTTATTTAGATG
CCACCAGCAAATCAAAGACCATCTCCAGGACAACCTTTCTTATTGAACAT
CAATCGACAAACTTCAACCATCCCTCGAGGCGGTGAGGATCACGTTGGCA
AGAATTGGCAGTATCCTTCAGAACAAATGTTCTGGAATGCTATGCTGCGG
AAAGGTTAGTTTTAATATGATCCATGACAGGCACCACTGCAATGACTTCA
CGAAATTATGCAACTTTTCTGTTTTTGTTCCACCCAATACGTCACTTTTT
CTATTGTTTAAGTGACGTATTGGGTGGGAAATTTTTAAAGTTCTCAGAAG
ACTCTCCATAACAGTCATGCAATTTGTCTCATTTAATCAAACATGATATC
ACACTGTCGTTCACATGACAAAAGGTTTAATCTCAAGCCTTGAAAAGCCC
TGACTGTTTGAAATTGAACCTTTTGTTATGTTAACGACGATATGATATCA
TGTTTGAATGAATTGGTCAAAATAGGTATCACTGTGAATTGAAAATTTTT
GTTATACCCTGTTTGTGAGATTGGTTTTCTTGTAGTATGTTGACTATTTT
AACAAAATAGTGACGCTTAATAAGAACATACTTTGAACTTTTGTCAGATT
CACCTTTTACAACCCATACCCTCTTTAATATGTAGCCTTGTGAATATAGA
GACGTTTCAGTAGAACACACTCAAATTCACACTTTTATTTTTACATAAGT
GTTCCCGCTCCATATCATGTATCAGGACAGTGTCTGCCTATTGTTATGTT
ATGCTGATTGAGCAAAAAAATGTTTTTCTTTTCCTCTTTCTGACCAATCT
TGCTCCACATCCGTGCCAATTCAGCTTGTAAATTTAAATTGACGAGTAAG
CAAACGATATCACTCTTATTTAAAAACAAAACCTTTTTAATATGTAGCCA
TATGAATAATCTTTACCGAGTTTATGTATCGGAGGATATCGAGGGCGACG
GTAAGTGAAATGATACAAAACAAAGTCGATAGTTGATGTACGGCTCTATA
TCGCCTTTGCTCTATATCGCCTTTGCTCACCTAAACAGACGACGGTATTT
TGGTGTTTTTACCGTCGTCGAGCAAAGTGGATGGTCATTTTGGATATACT
TTATACCGTCCCCCTCGATTTATCTCGAAAAAATCGCCTTTGTTACAGGT
TGGCGATGGGATAAAGACGCTTTATCACAACAAGACATGTCACATATCAT
TCGTATTCACAACACAAATAATGAACGTGCGTGGGATGAAATTATGATGT
GGGAAGCTTTCCATCCGTATGTTGATTTTCTTCGTGTTTTCATATTGGAC
ACTTTTTTTATAAGAACATCCAAAATTTTTGAAGCCTTCGGATGCTCTTA
ACTTTTTGAGTTTCAAGCCTATAAAAATGCTCTTAACATGTTCTTATTTC
CACCATTTTTGTCTATTTTCCTAAGAAATTGGGTGTTTTAGAGTCCGCAA
AGCCTTAAAATGTTTTTAACTTGTTCTTGATATTTTGGCCATCGAAGCCT
TGTGAAAAACGTGTACAATTGATTGATTTCACTTCTTCGTGTTTTCATAT
TGTATAAGTATACATATTATATTCTCTACTACGAACGTTCAGGAACGTCT
CAAGATCGTTTGTACTTTAAATCGCTGGTGATGACTGCTTTATTAATTTA
TTTTATTTTTTCAGCGAATGTGAGCAACCCAAACTATTGAAGTTTGGTGG
GCGAGCCAAAGATTATTCACCCAGAGCAAGATTCAGAGCTTTGATGGGGT
AAGTTTCTTTTGTTGTTAGTTTTAAACCAAAACACCGGCCTGCTGCTATA
AGACATGTATCTCATATGAAACGGGAACAAAAACTAAAACCTTCAACAAC
TAGAAACAAATCAACATGTAGGGCTAGTCGTCTCAAAAGCCAGACACAAT
ACTGTTCGTATAGTAAGCTCAATCCAGTCAAGTAGATAGATACTGTACGT
TGGTCTAATATCGACACCCCTTTTCTAATTCTGGCATCCTTCTTTTTAGA
TAGGAATAATGGGAAGGTCGGAATCACTGATTGAAACTGATTTTCTTGGC
TTAGCGATCAGAGAGAAATAAATCTTTTGTCTATCAGTGATTACGACTTT
CCTATCATTCCTATCTAAAAAGAAGGGTGTCGAAATTAGAAGGGGGATGT
CGACATTAGACCAACGTGCGGTAGAGGCTAACACATTTATATTACCGGCT
ACAATATCTCTGAAATCTAATAATGGAAATTTCACGAAATATTCGATTTT
TTTTTTTAATTTGAATCATTTGAACATCTTTAAAGTGTCTTCCATTTCAA
ACTTTTCTCATTAGGCGAAAATAAAAAAATTTAGTGTTTCCGGAATGCGG
GTGAAGGAAAGAAGCTCTCGTACGGCCGGCCGGAAATTTTTTTTGTTGTT
GCTATTTTTGATAACTTACGATCATTGAAATCAGTTGAAATAGAACTTTA
AATATTACTTTTATGTACGAACAGTATGAGGTAAGCCCTGAATGTTAATG
TGTCAACTGCTAACGAAAAAAATTTGATTTACCAGCGGGAATATCTAACC
AAACAACTTTTGATAGCTTGAAAGGTCAACTTGATTTTCTTTATGATGAA
TCCAATAGATGAACCAATAGTCTGTGAATTTTTTTTCACCCGGCCGGTTT
CCGGAAACACTACGTATTTCTTTATTTTCGCCTTAGCAATGATTTACCAT
TTGATCGGCACGATTGGATTATAGACCGCAATGGAAAACCCGTCAGATAC
ATTATAGATTATTATGATATTGGTGACGAGAATGGTTACAAAACTGGAGA
ATTCGTTGAACTTGATGTACGACCAGCTTTTGACTCTTTCGGTGCAGCTT
TTGACCGTTCTCGTGTTGCTATGTTACGGAAAGCAGCTGGTGTTTACCAA
TGGTGGAAAGGTGCACCAGAAGAACAAGCTTTACCACCAGCAAGTAGTGA
AACCTCATGATATCTCTTTTATAGAGTTTGTTGAATTTTTTTGAAAAGTT
TCGATTGTTTAATTGGTGATTGCTGCGCAGTTTGTCACGACATGGAAATC

Coding sequence (CDS) from alignment at scaffold_171:62406..67255-

>TCONS_00050429 ID=TCONS_00050429|Name=TCONS_00050429|organism=Clytia hemisphaerica|type=CDS|length=4695bp|location=Sequence derived from alignment at scaffold_171:62406..67255- (Clytia hemisphaerica)
CAATGATTTACCATTTGATCGGCACGATTGGATTATAGACCGCAATGGAA
AACCCGTCAGATACATTATAGATTATTATGATATTGGTGACGAGAATGGT
TACAAAACTGGAGAATTCGTTGAACTTGATGTACGACCAGCTTTTGACTC
TTTCGGTGCAGCTTTTGACCGTTCTCGTGTTGCTATGTTACGGAAAGCAG
CTGGTGTTTACCAATGGTGGAAAGGTGCACCAGAAGAACAAGCTTTACCA
CCAGCAAGTAGTGAAACCTCATGACGAATGTGAGCAACCCAAACTATTGA
AGTTTGGTGGGCGAGCCAAAGATTATTCACCCAGAGCAAGATTCAGAGCT
TTGATGGGGTTGGCGATGGGATAAAGACGCTTTATCACAACAAGACATGT
CACATATCATTCGTATTCACAACACAAATAATGAACGTGCGTGGGATGAA
ATTATGATGTGGGAAGCTTTCCATCCATGCCACCAGCAAATCAAAGACCA
TCTCCAGGACAACCTTTCTTATTGAACATCAATCGACAAACTTCAACCAT
CCCTCGAGGCGGTGAGGATCACGTTGGCAAGAATTGGCAGTATCCTTCAG
AACAAATGTTCTGGAATGCTATGCTGCGGAAAGATGGGAAATACATCTTC
AACAACTCCAACTGAGGAAATTGCGGCAAAACCAAGACCAGAAGATCAGC
GTGACTATCCACGTACCGGTCCCTCTGCACCTACAGAATGTCCAATGCAT
ACCTCAAACCCTGATAAAACAGCACCAAGTACTGTTACAGCAAAGCAGGT
GATCCCATCAGAATGTCCGATGCACGCATCAAATGTCGACAAACCGAAAG
TTGAATCTAAACCAATTCCAAGTGACTGTCCAATGCATGCATCAAATGTG
GATGGTAATAAAGAAAATGAGCTGGACCCGACAAACATGCAATGATTTAC
CATTTGATCGGCACGATTGGATTATAGACCGCAATGGAAAACCCGTCAGA
TACATTATAGATTATTATGATATTGGTGACGAGAATGGTTACAAAACTGG
AGAATTCGTTGAACTTGATGTACGACCAGCTTTTGACTCTTTCGGTGCAG
CTTTTGACCGTTCTCGTGTTGCTATGTTACGGAAAGCAGCTGGTGTTTAC
CAATGGTGGAAAGGTGCACCAGAAGAACAAGCTTTACCACCAGCAAGTAG
TGAAACCTCATGACGAATGTGAGCAACCCAAACTATTGAAGTTTGGTGGG
CGAGCCAAAGATTATTCACCCAGAGCAAGATTCAGAGCTTTGATGGGGTT
GGCGATGGGATAAAGACGCTTTATCACAACAAGACATGTCACATATCATT
CGTATTCACAACACAAATAATGAACGTGCGTGGGATGAAATTATGATGTG
GGAAGCTTTCCATCCATGCCACCAGCAAATCAAAGACCATCTCCAGGACA
ACCTTTCTTATTGAACATCAATCGACAAACTTCAACCATCCCTCGAGGCG
GTGAGGATCACGTTGGCAAGAATTGGCAGTATCCTTCAGAACAAATGTTC
TGGAATGCTATGCTGCGGAAAGATGGGAAATACATCTTCAACAACTCCAA
CTGAGGAAATTGCGGCAAAACCAAGACCAGAAGATCAGCGTGACTATCCA
CGTACCGGTCCCTCTGCACCTACAGAATGTCCAATGCATACCTCAAACCC
TGATAAAACAGCACCAAGTACTGTTACAGCAAAGCAGGTGATCCCATCAG
AATGTCCGATGCACGCATCAAATGTCGACAAACCGAAAGTTGAATCTAAA
CCAATTCCAAGTGACTGTCCAATGCATGCATCAAATGTGGATGGTAATAA
AGAAAATGAGCTGGACCCGACAAACATGCAATGATTTACCATTTGATCGG
CACGATTGGATTATAGACCGCAATGGAAAACCCGTCAGATACATTATAGA
TTATTATGATATTGGTGACGAGAATGGTTACAAAACTGGAGAATTCGTTG
AACTTGATGTACGACCAGCTTTTGACTCTTTCGGTGCAGCTTTTGACCGT
TCTCGTGTTGCTATGTTACGGAAAGCAGCTGGTGTTTACCAATGGTGGAA
AGGTGCACCAGAAGAACAAGCTTTACCACCAGCAAGTAGTGAAACCTCAT
GACGAATGTGAGCAACCCAAACTATTGAAGTTTGGTGGGCGAGCCAAAGA
TTATTCACCCAGAGCAAGATTCAGAGCTTTGATGGGGTTGGCGATGGGAT
AAAGACGCTTTATCACAACAAGACATGTCACATATCATTCGTATTCACAA
CACAAATAATGAACGTGCGTGGGATGAAATTATGATGTGGGAAGCTTTCC
ATCCATGCCACCAGCAAATCAAAGACCATCTCCAGGACAACCTTTCTTAT
TGAACATCAATCGACAAACTTCAACCATCCCTCGAGGCGGTGAGGATCAC
GTTGGCAAGAATTGGCAGTATCCTTCAGAACAAATGTTCTGGAATGCTAT
GCTGCGGAAAGATGGGAAATACATCTTCAACAACTCCAACTGAGGAAATT
GCGGCAAAACCAAGACCAGAAGATCAGCGTGACTATCCACGTACCGGTCC
CTCTGCACCTACAGAATGTCCAATGCATACCTCAAACCCTGATAAAACAG
CACCAAGTACTGTTACAGCAAAGCAGGTGATCCCATCAGAATGTCCGATG
CACGCATCAAATGTCGACAAACCGAAAGTTGAATCTAAACCAATTCCAAG
TGACTGTCCAATGCATGCATCAAATGTGGATGGTAATAAAGAAAATGAGC
TGGACCCGACAAACATGCAATGATTTACCATTTGATCGGCACGATTGGAT
TATAGACCGCAATGGAAAACCCGTCAGATACATTATAGATTATTATGATA
TTGGTGACGAGAATGGTTACAAAACTGGAGAATTCGTTGAACTTGATGTA
CGACCAGCTTTTGACTCTTTCGGTGCAGCTTTTGACCGTTCTCGTGTTGC
TATGTTACGGAAAGCAGCTGGTGTTTACCAATGGTGGAAAGGTGCACCAG
AAGAACAAGCTTTACCACCAGCAAGTAGTGAAACCTCATGACGAATGTGA
GCAACCCAAACTATTGAAGTTTGGTGGGCGAGCCAAAGATTATTCACCCA
GAGCAAGATTCAGAGCTTTGATGGGGTTGGCGATGGGATAAAGACGCTTT
ATCACAACAAGACATGTCACATATCATTCGTATTCACAACACAAATAATG
AACGTGCGTGGGATGAAATTATGATGTGGGAAGCTTTCCATCCATGCCAC
CAGCAAATCAAAGACCATCTCCAGGACAACCTTTCTTATTGAACATCAAT
CGACAAACTTCAACCATCCCTCGAGGCGGTGAGGATCACGTTGGCAAGAA
TTGGCAGTATCCTTCAGAACAAATGTTCTGGAATGCTATGCTGCGGAAAG
ATGGGAAATACATCTTCAACAACTCCAACTGAGGAAATTGCGGCAAAACC
AAGACCAGAAGATCAGCGTGACTATCCACGTACCGGTCCCTCTGCACCTA
CAGAATGTCCAATGCATACCTCAAACCCTGATAAAACAGCACCAAGTACT
GTTACAGCAAAGCAGGTGATCCCATCAGAATGTCCGATGCACGCATCAAA
TGTCGACAAACCGAAAGTTGAATCTAAACCAATTCCAAGTGACTGTCCAA
TGCATGCATCAAATGTGGATGGTAATAAAGAAAATGAGCTGGACCCGACA
AACATGCAATGATTTACCATTTGATCGGCACGATTGGATTATAGACCGCA
ATGGAAAACCCGTCAGATACATTATAGATTATTATGATATTGGTGACGAG
AATGGTTACAAAACTGGAGAATTCGTTGAACTTGATGTACGACCAGCTTT
TGACTCTTTCGGTGCAGCTTTTGACCGTTCTCGTGTTGCTATGTTACGGA
AAGCAGCTGGTGTTTACCAATGGTGGAAAGGTGCACCAGAAGAACAAGCT
TTACCACCAGCAAGTAGTGAAACCTCATGACGAATGTGAGCAACCCAAAC
TATTGAAGTTTGGTGGGCGAGCCAAAGATTATTCACCCAGAGCAAGATTC
AGAGCTTTGATGGGGTTGGCGATGGGATAAAGACGCTTTATCACAACAAG
ACATGTCACATATCATTCGTATTCACAACACAAATAATGAACGTGCGTGG
GATGAAATTATGATGTGGGAAGCTTTCCATCCATGCCACCAGCAAATCAA
AGACCATCTCCAGGACAACCTTTCTTATTGAACATCAATCGACAAACTTC
AACCATCCCTCGAGGCGGTGAGGATCACGTTGGCAAGAATTGGCAGTATC
CTTCAGAACAAATGTTCTGGAATGCTATGCTGCGGAAAGATGGGAAATAC
ATCTTCAACAACTCCAACTGAGGAAATTGCGGCAAAACCAAGACCAGAAG
ATCAGCGTGACTATCCACGTACCGGTCCCTCTGCACCTACAGAATGTCCA
ATGCATACCTCAAACCCTGATAAAACAGCACCAAGTACTGTTACAGCAAA
GCAGGTGATCCCATCAGAATGTCCGATGCACGCATCAAATGTCGACAAAC
CGAAAGTTGAATCTAAACCAATTCCAAGTGACTGTCCAATGCATGCATCA
AATGTGGATGGTAATAAAGAAAATGAGCTGGACCCGACAAACATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031934XLOC_031934Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050429-exon-scaffold_171-1575043694:66898..67255TCONS_00050429-exon-scaffold_171-1575043694:66898..67255Clytia hemisphaericaexon
TCONS_00050429-exon-scaffold_171-1575043694:65302..65458TCONS_00050429-exon-scaffold_171-1575043694:65302..65458Clytia hemisphaericaexon
TCONS_00050429-exon-scaffold_171-1575043694:64190..64307TCONS_00050429-exon-scaffold_171-1575043694:64190..64307Clytia hemisphaericaexon
TCONS_00050429-exon-scaffold_171-1575043694:63708..63791TCONS_00050429-exon-scaffold_171-1575043694:63708..63791Clytia hemisphaericaexon
TCONS_00050429-exon-scaffold_171-1575043694:62406..62769TCONS_00050429-exon-scaffold_171-1575043694:62406..62769Clytia hemisphaericaexon
TCONS_00050429-exon-scaffold_171-1510915933:66898..67255TCONS_00050429-exon-scaffold_171-1510915933:66898..67255Clytia hemisphaericaexon
TCONS_00050429-exon-scaffold_171-1510915933:65302..65458TCONS_00050429-exon-scaffold_171-1510915933:65302..65458Clytia hemisphaericaexon
TCONS_00050429-exon-scaffold_171-1510915933:64190..64307TCONS_00050429-exon-scaffold_171-1510915933:64190..64307Clytia hemisphaericaexon
TCONS_00050429-exon-scaffold_171-1510915933:63708..63791TCONS_00050429-exon-scaffold_171-1510915933:63708..63791Clytia hemisphaericaexon
TCONS_00050429-exon-scaffold_171-1510915933:62406..62769TCONS_00050429-exon-scaffold_171-1510915933:62406..62769Clytia hemisphaericaexon
TCONS_00050429-exon-scaffold_171-1491911889:66898..67255TCONS_00050429-exon-scaffold_171-1491911889:66898..67255Clytia hemisphaericaexon
TCONS_00050429-exon-scaffold_171-1491911889:65302..65458TCONS_00050429-exon-scaffold_171-1491911889:65302..65458Clytia hemisphaericaexon
TCONS_00050429-exon-scaffold_171-1491911889:64190..64307TCONS_00050429-exon-scaffold_171-1491911889:64190..64307Clytia hemisphaericaexon
TCONS_00050429-exon-scaffold_171-1491911889:63708..63791TCONS_00050429-exon-scaffold_171-1491911889:63708..63791Clytia hemisphaericaexon
TCONS_00050429-exon-scaffold_171-1491911889:62406..62769TCONS_00050429-exon-scaffold_171-1491911889:62406..62769Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050429-proteinTCONS_00050429-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_171supercontigscaffold_171:62406..67255 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
39.2208	34.9535	15.5704	12.1685	35.4439	29.5257	35.883	37.1191	41.7933	35.5452	31.4095	33.3826	26.0034	27.8478	29.294	30.3213	83.5641	75.3825	17.5593	22.493	49.5253	52.3811	38.9054	36.5158	78.1038	57.6983	20.4184	13.8129	22.9853	21.9001
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000511Cyt_C/C1_haem_lyase
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
Vocabulary: Molecular Function
TermDefinition
GO:0004408holocytochrome-c synthase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005739 mitochondrion
molecular_function GO:0004408 holocytochrome-c synthase activity
Blast
[Close]
BLAST of TCONS_00050429 vs. Swiss-Prot (Human)
Match: CCHL (Cytochrome c-type heme lyase OS=Homo sapiens GN=HCCS PE=1 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 5.825e-79
Identity = 135/262 (51.53%), Postives = 170/262 (64.89%), Query Frame = 2 
Query:  143 SAPTECPMHTSN----PDKTAPSTVTAKQVIPSECPMHASNVDKPKVESKPIPSDCPMHASNVDGNKENELDPTNMMPPANQRPSPGQPFLLNINRQTSTIPRGGEDHVGKNWQYPSEQMFWNAMLRKGWRWDKDALSQQDMSHIIRIHNTNNERAWDEIMMWEAFH-PECE-QPKLLKFGGRAKDYSPRARFRALMGNDLPFDRHDWIIDRNGKPVRYIIDYYDIGDENGYKTGEFVELDVRPAFDSFGAAFDRSRVAMLR 910
            S P+ CPMH       P  T PS  T ++   S  P H     +          +CP+  +  + NKEN LDP+N+MPP NQ P+P QPF L+  R+ S+IPR   +   K W YPSEQMFWNAML+KGW+W  + +SQ+DM +IIRIHN NNE+AW EI+ WEA H  EC   P L++FGG+AK+YSPRAR R+ MG +LPFDRHDWII+R G  VRY+IDYYD G+ N  K  +F  LDVRPA DS  A +DR +VA  R
Sbjct:   20 SPPSGCPMHEGKMKGCPVNTEPSGPTCEKKTYS-VPAHQERAYEY--------VECPIRGTAAE-NKEN-LDPSNLMPPPNQTPAPDQPFALSTVREESSIPRADSE---KKWVYPSEQMFWNAMLKKGWKWKDEDISQKDMYNIIRIHNQNNEQAWKEILKWEALHAAECPCGPSLIRFGGKAKEYSPRARIRSWMGYELPFDRHDWIINRCGTEVRYVIDYYDGGEVN--KDYQFTILDVRPALDSLSAVWDRMKVAWWR 265
The following BLAST results are available for this feature:
BLAST of TCONS_00050429 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CCHL5.825e-7951.53Cytochrome c-type heme lyase OS=Homo sapiens GN=HC... [more]
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