TCONS_00050423 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050423
Unique NameTCONS_00050423
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length673

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050423 ID=TCONS_00050423|Name=TCONS_00050423|organism=Clytia hemisphaerica|type=transcript|length=673bp
CTCACTGGACAATAGTTTACAAAATGAGGTCACCTTTCTCAAAGATGAGT
TAGCCAATTTGGAAATGAAGAAAAGCCAGGAAATCTTAACACTAAGCGAG
AGAACTGAGCGACAAATCAGCACTCTTCATGTCCTCCGCCACAAAAGAGA
AAAACTTGATACAAGAAGAGAACGAACAGCTGAAAGAATCACTTTCCAAG
AAAGAACATCTTTGTTTACAACTGCAAGaaatattgaatgaaaaatcaCA
ACAAATCGTCCGCATGCAACACAAGGAGACTGAAAACAGATCCAATTTAA
ATACAGAGGTCAAAAATTTGCGATCGAAGAAAAGTCAATTGGAAAATCGT
GTATCAGACCTGGAAAAGGCTTTTTACAAACAATTATCAAAGATCAAAGA
GTTTGAATCACAATTCAAAGAAATGAAAGAACAACGTGATATTTCAATGA
TAgccaaagaagaagaaatagCTGAATTGAAACAACAAAACGAATTTTTG
AAGAACGAAATGAAAAACGTTCAGAACGACGTCTATACTAATCCCGAGAT
CACAACCCTACGAACACAATTGATGAGAGAAGTCCAGAAAAACAAACAGT
TACAACAAGACCTTCGGAATGTTGATGATATACACCGTAATctcgaaaat
gtcaaatttcaactCAACCAGGt
Run BLAST on NCBI

protein sequence of TCONS_00050423-protein

>TCONS_00050423-protein ID=TCONS_00050423-protein|Name=TCONS_00050423-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
MSSATKEKNLIQEENEQLKESLSKKEHLCLQLQEILNEKSQQIVRMQHKE
TENRSNLNTEVKNLRSKKSQLENRVSDLEKAFYKQLSKIKEFESQFKEMK
EQRDISMIAKEEEIAELKQQNEFLKNEMKNVQNDVYTNPEITTLRTQLMR
EVQKNKQLQQDLRNVDDIHRNLENVKFQLNQ
Run BLAST on NCBI

transcript from alignment at scaffold_171:178536..181898+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050423 ID=TCONS_00050423|Name=TCONS_00050423|organism=Clytia hemisphaerica|type=transcript|length=3363bp|location=Sequence derived from alignment at scaffold_171:178536..181898+ (Clytia hemisphaerica)
CTCACTGGACAATAGTTTACAAAATGAGGTCACCTTTCTCAAAGATGAGT
TAGCCAATTTGGAAATGAAGAAAAGCCAGGAAATCTTAACACTAAGCGAG
GTAAACAATTATTGGATACATATAAAGTTTCAAGTGGtcgaaattaaatt
gaaatgtcTCTGAAAAATAGACCATTGAGACCAAAAATAATTGTTACTCT
CGGGGCTAGGtagggggtttggaataagcgggggggggggctgaagttgg
gttggaaaaaaatgtactgggtggaaaattttgaaaaggacGCTAATata
gcagaattagggcaaaagagggaactttttcccaaaaattattAAGGGGG
GGGGTGATTgttcgaataaaaatgtcttgagtggaaaattttcgaaaatt
aatgggcgggggacgcttattaggcacctgagagtaacCAGGAACAGAGA
AGAGCCATCCTATAGGTTTATGTCTTTAGCAATGATCAAAAACTGAATGA
CAACCATTGATTCGAAAACCTTTTGCCAGAAAAAGTCTTTTACACATCAT
GATACTCAAATTAAAGTATTTGCTTAGCTTTTACTCCATTGTAAAATGTG
CTAACTATATGTACTAGAGAACTGAGCGACAAATCAGCACTCTTCATGTC
CTCCGCCACAAAAGAGAAAAACTTGATACAAGAAGAGAACGAACAGCTGA
AAGAATCACTTTCCAAGAAAGAACATCTTTGTTTACAACTGCAAGaaata
ttgaatgaaaaatcaCAACAAATCGTCCGCATGCAACACAAGGAGACTGA
AAACAGATCCAATTTAAATACAGAGGTAGTTGTGGTTAATTTGCTTTGAT
CAGAttattttcgcgagattaaatcaCGTGAGATTACTTacgcgaaactt
ttttaaaacGCTGATTTTTGATTCGCAAATCTTTTGgctcgcaaaattaa
atcttgCAAAGATTTTAAATACGATCTAAATGATTTCTAGCATCTATAtc
gtatttttgtctcgatcctccgtccaATATATACGATCTAAATATATTGC
ATCAAATTTCTACTAGAAGCCGTTTTTCGAAATCTTAATTGAATATAGGG
TCACGTCTGTTTGTGCCGTAACGTGAAGTTATATCATTCAGCTATTGTAC
GCAAGTCTGCGGGCTAGGTCACACTAAAGATTTCCAAGATTGCATTTGGT
ACCTCTTTTACTTGATGCTCAGCAGCTAGAGACACAGACCCAGGAAAATG
AGAGTGGctccctcccctaccttcggataGTCCTAAAGAAAAGAGAGCCT
CTGGGTTTCCTTCAAGTTGGGTCGGAAACTTACGTATATATGGCGTGTTT
CTATAGATCACCTCCAATATAACAAACCAGGTTATTTCGTTTTCCTTGAT
TTAATCTTGTAATGCATCAATTATACAGGTCAAAAATTTGCGATCGAAGA
AAAGTCAATTGGAAAATCGTGTATCAGACCTGGAAAAGGTAGATTTCATT
TCTCTTTTAGAATTGAAGTTatatatttctttaaaattatctgcatagtt
caaattttcttttcgacCCTTATAATTATAATGATATTTTACGACCGCCT
ACGTCGTAGGTTTGGCCTGGACGGAACAATCTCTAATGTTTGCGAGAGAC
TAATTCCATACCAGACCTCCCTAATTTCTTGCTCATGGTAATTGCACAAA
ACCTattcatgtttttgttttcaagactTGATCCACCAAAGTTTTCACGG
GACGACCTTTCTTTATATAACGATCGTCATTAAACATGAGCATTTTTGTT
GTCTTCCCTATTCTTTAATTACGGTGTGTTTATTTTCGCTAACAGGCTTT
TTACAAACAATTATCAAAGATCAAAGAGTTTGAATCACAATTCAAAGAAA
TGAAAGAACAACGTGATATTTCAATGATAGTAAGGTCTTGTTTGAAAACC
CTTCTGTTCACTTTTTCTCTTAGtttgaaccacaagtgattttgtgGTTT
AGAGATGTTGGCTAAATCGATCTGGCCAGCCAGGGTGCAGTACGCAGTGC
TGATGAGTcccaataaggacgaaatgcatgctgctctgccacccaaatct
cccgagtgaatatagttggacagaaatttttattttcttcacatgtataa
aaaaatttacgaaTATAAGTTGAAAGAGTAGACTTGTTTCCTTTGTATGA
TATGTAGTCTCCCTTTTTCCTTGGGTACGTCTTgtcatcaaaatccaaaa
caCTTAGTATAATCTGCTTCATTATTTCGCTTTTTTATATGTTAGgccaa
agaagaagaaatagCTGAATTGAAACAACAAAACGAATTTTTGAAGAACG
AAATGAAAAACGTTCAGAACGACGTCTATACTAATCCCGTAAGAATTTTG
ATATTATCGATGGTTTTTAGATGAAAGGGAACAATCAAAGTTAGACAGTA
TTAAAtgccttatgttaaagttgcaACAGGGGTATCTATTCTAATTCTTT
ATGAGATGAATTGTATGCTCTTTCACTAGGAGTGATGGCCAAGTGGTCTA
GCGCGTCCGCGTCTCAAACCAGGGGTTCGCGGCTCCCTGCGGCTCCCTGC
GGCTCCCTGCGGCTCCCCGCttcttccaatgttccgttcagttcaaaGAT
AGCAGAGCCGGTTgaccgtggaccccgtgaaaacaatagaaagactgtct
aaaagtcctagattactgggctatccgcGTAAAATGTCGACTCTATCCTA
TAACTAGGAAATAAATTGCCAAGAGCCAGATTCGTTTTAATAGCATTAAG
AGACAGTATTGAGGATATCTTACATTCTGGAGCCAAACGTTCTCTTTCTC
CAGCTTTAATGAAATGATGTTATTGCCGTATTACCGGAGAGGGGCAAGAG
AGGCCAATAATCTTTTTAGAAGTGTGTATTGTAATAGATTAGGAACTTTT
GAATTGAATGCTGTCTTTATTTCAATGAACGTGTTTTTAGCGATATAGAC
TTCTAAATTCTTAAAATCCTTAGCTAAATATATAGATTAGGAAGTAAGTC
TCCACTGTACCACTAGACTCGTGCCCACTCCATATTTCCTGTTGTATAGA
AAACTACAATATCTGAAATATCTCCCACTTAGGAGACCACTAGACCTCTA
AATTTCCATAGCTTCAAAGTCTCAGAGTCTCTAATATCCCTGCTGTatag
aatattttgatttttgtaacgTCTCATACTTCTAGGAGATCACAACCCTA
CGAACACAATTGATGAGAGAAGTCCAGAAAAACAAACAGTTACAACAAGA
CCTTCGGAATGTTGATGATATACACCGTAATctcgaaaatgtcaaatttc
aactCAACCAGGt

Coding sequence (CDS) from alignment at scaffold_171:178536..181898+

>TCONS_00050423 ID=TCONS_00050423|Name=TCONS_00050423|organism=Clytia hemisphaerica|type=CDS|length=2715bp|location=Sequence derived from alignment at scaffold_171:178536..181898+ (Clytia hemisphaerica)
ATGTCCTCCGCCACAAAAGAGAAAAACTTGATACAAGAAGAGAACGAACA
GCTGAAAGAATCACTTTCCAAGAAAGAACATCTTTGTTTACAACTGCAAG
aaatattgaatgaaaaatcaCAACAAATCGTCCGCATGCAACACAAGGAG
ACTGAAAACAGATCCAATTTAAATACAGAGGTCAAAAATTTGCGATCGAA
GAAAAGTCAATTGGAAAATCGTGTATCAGACCTGGAAAAGGCTTTTTACA
AACAATTATCAAAGATCAAAGAGTTTGAATCACAATTCAAAGAAATGAAA
GAACAACGTGATATTTCAATGATAgccaaagaagaagaaatagCTGAATT
GAAACAACAAAACGAATTTTTGAAGAACGAAATGAAAAACGTTCAGAACG
ACGTCTATACTAATCCCGAGATCACAACCCTACGAACACAATTGATGAGA
GAAGTCCAGAAAAACAAACAGTTACAACAAGACCTTCGGAATGTTGATGA
TATACACCGTAATctcgaaaatgtcaaatttcaactCAACCAGATGTCCT
CCGCCACAAAAGAGAAAAACTTGATACAAGAAGAGAACGAACAGCTGAAA
GAATCACTTTCCAAGAAAGAACATCTTTGTTTACAACTGCAAGaaatatt
gaatgaaaaatcaCAACAAATCGTCCGCATGCAACACAAGGAGACTGAAA
ACAGATCCAATTTAAATACAGAGGTCAAAAATTTGCGATCGAAGAAAAGT
CAATTGGAAAATCGTGTATCAGACCTGGAAAAGGCTTTTTACAAACAATT
ATCAAAGATCAAAGAGTTTGAATCACAATTCAAAGAAATGAAAGAACAAC
GTGATATTTCAATGATAgccaaagaagaagaaatagCTGAATTGAAACAA
CAAAACGAATTTTTGAAGAACGAAATGAAAAACGTTCAGAACGACGTCTA
TACTAATCCCGAGATCACAACCCTACGAACACAATTGATGAGAGAAGTCC
AGAAAAACAAACAGTTACAACAAGACCTTCGGAATGTTGATGATATACAC
CGTAATctcgaaaatgtcaaatttcaactCAACCAGATGTCCTCCGCCAC
AAAAGAGAAAAACTTGATACAAGAAGAGAACGAACAGCTGAAAGAATCAC
TTTCCAAGAAAGAACATCTTTGTTTACAACTGCAAGaaatattgaatgaa
aaatcaCAACAAATCGTCCGCATGCAACACAAGGAGACTGAAAACAGATC
CAATTTAAATACAGAGGTCAAAAATTTGCGATCGAAGAAAAGTCAATTGG
AAAATCGTGTATCAGACCTGGAAAAGGCTTTTTACAAACAATTATCAAAG
ATCAAAGAGTTTGAATCACAATTCAAAGAAATGAAAGAACAACGTGATAT
TTCAATGATAgccaaagaagaagaaatagCTGAATTGAAACAACAAAACG
AATTTTTGAAGAACGAAATGAAAAACGTTCAGAACGACGTCTATACTAAT
CCCGAGATCACAACCCTACGAACACAATTGATGAGAGAAGTCCAGAAAAA
CAAACAGTTACAACAAGACCTTCGGAATGTTGATGATATACACCGTAATc
tcgaaaatgtcaaatttcaactCAACCAGATGTCCTCCGCCACAAAAGAG
AAAAACTTGATACAAGAAGAGAACGAACAGCTGAAAGAATCACTTTCCAA
GAAAGAACATCTTTGTTTACAACTGCAAGaaatattgaatgaaaaatcaC
AACAAATCGTCCGCATGCAACACAAGGAGACTGAAAACAGATCCAATTTA
AATACAGAGGTCAAAAATTTGCGATCGAAGAAAAGTCAATTGGAAAATCG
TGTATCAGACCTGGAAAAGGCTTTTTACAAACAATTATCAAAGATCAAAG
AGTTTGAATCACAATTCAAAGAAATGAAAGAACAACGTGATATTTCAATG
ATAgccaaagaagaagaaatagCTGAATTGAAACAACAAAACGAATTTTT
GAAGAACGAAATGAAAAACGTTCAGAACGACGTCTATACTAATCCCGAGA
TCACAACCCTACGAACACAATTGATGAGAGAAGTCCAGAAAAACAAACAG
TTACAACAAGACCTTCGGAATGTTGATGATATACACCGTAATctcgaaaa
tgtcaaatttcaactCAACCAGATGTCCTCCGCCACAAAAGAGAAAAACT
TGATACAAGAAGAGAACGAACAGCTGAAAGAATCACTTTCCAAGAAAGAA
CATCTTTGTTTACAACTGCAAGaaatattgaatgaaaaatcaCAACAAAT
CGTCCGCATGCAACACAAGGAGACTGAAAACAGATCCAATTTAAATACAG
AGGTCAAAAATTTGCGATCGAAGAAAAGTCAATTGGAAAATCGTGTATCA
GACCTGGAAAAGGCTTTTTACAAACAATTATCAAAGATCAAAGAGTTTGA
ATCACAATTCAAAGAAATGAAAGAACAACGTGATATTTCAATGATAgcca
aagaagaagaaatagCTGAATTGAAACAACAAAACGAATTTTTGAAGAAC
GAAATGAAAAACGTTCAGAACGACGTCTATACTAATCCCGAGATCACAAC
CCTACGAACACAATTGATGAGAGAAGTCCAGAAAAACAAACAGTTACAAC
AAGACCTTCGGAATGTTGATGATATACACCGTAATctcgaaaatgtcaaa
tttcaactCAACCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031928XLOC_031928Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050423-exon-scaffold_171-1491911889:178536..178635TCONS_00050423-exon-scaffold_171-1491911889:178536..178635Clytia hemisphaericaexon
TCONS_00050423-exon-scaffold_171-1510915933:178536..178635TCONS_00050423-exon-scaffold_171-1510915933:178536..178635Clytia hemisphaericaexon
TCONS_00050423-exon-scaffold_171-1575043694:178536..178635TCONS_00050423-exon-scaffold_171-1575043694:178536..178635Clytia hemisphaericaexon
TCONS_00050423-exon-scaffold_171-1491911889:179153..179360TCONS_00050423-exon-scaffold_171-1491911889:179153..179360Clytia hemisphaericaexon
TCONS_00050423-exon-scaffold_171-1510915933:179153..179360TCONS_00050423-exon-scaffold_171-1510915933:179153..179360Clytia hemisphaericaexon
TCONS_00050423-exon-scaffold_171-1575043694:179153..179360TCONS_00050423-exon-scaffold_171-1575043694:179153..179360Clytia hemisphaericaexon
TCONS_00050423-exon-scaffold_171-1491911889:179964..180023TCONS_00050423-exon-scaffold_171-1491911889:179964..180023Clytia hemisphaericaexon
TCONS_00050423-exon-scaffold_171-1510915933:179964..180023TCONS_00050423-exon-scaffold_171-1510915933:179964..180023Clytia hemisphaericaexon
TCONS_00050423-exon-scaffold_171-1575043694:179964..180023TCONS_00050423-exon-scaffold_171-1575043694:179964..180023Clytia hemisphaericaexon
TCONS_00050423-exon-scaffold_171-1491911889:180381..180464TCONS_00050423-exon-scaffold_171-1491911889:180381..180464Clytia hemisphaericaexon
TCONS_00050423-exon-scaffold_171-1510915933:180381..180464TCONS_00050423-exon-scaffold_171-1510915933:180381..180464Clytia hemisphaericaexon
TCONS_00050423-exon-scaffold_171-1575043694:180381..180464TCONS_00050423-exon-scaffold_171-1575043694:180381..180464Clytia hemisphaericaexon
TCONS_00050423-exon-scaffold_171-1491911889:180831..180923TCONS_00050423-exon-scaffold_171-1491911889:180831..180923Clytia hemisphaericaexon
TCONS_00050423-exon-scaffold_171-1510915933:180831..180923TCONS_00050423-exon-scaffold_171-1510915933:180831..180923Clytia hemisphaericaexon
TCONS_00050423-exon-scaffold_171-1575043694:180831..180923TCONS_00050423-exon-scaffold_171-1575043694:180831..180923Clytia hemisphaericaexon
TCONS_00050423-exon-scaffold_171-1491911889:181771..181898TCONS_00050423-exon-scaffold_171-1491911889:181771..181898Clytia hemisphaericaexon
TCONS_00050423-exon-scaffold_171-1510915933:181771..181898TCONS_00050423-exon-scaffold_171-1510915933:181771..181898Clytia hemisphaericaexon
TCONS_00050423-exon-scaffold_171-1575043694:181771..181898TCONS_00050423-exon-scaffold_171-1575043694:181771..181898Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050423-proteinTCONS_00050423-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_171supercontigscaffold_171:178536..181898 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.14284	3.42825	1.03769	1.45746	17.4494	15.0655	8.21447	9.26053	5.11128	6.14569	6.52485	4.0985	3.33449	1.39181	3.12597	3.82006	3.74035	4.5672	1.31597	0.929489	2.28944	2.21383	5.06378	4.63615	7.69653	8.09292	1.48766	1.3667	5.06266	4.36584
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050423 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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