|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050422 ID=TCONS_00050422|Name=TCONS_00050422|organism=Clytia hemisphaerica|type=transcript|length=1257bp
TTGACTTTTAAGGCATAAATTGTGTTTTTGAAATAAAGTAAAGGGTTGAA
TGTCtcaaattaacttttttaaatattttaaattttgattgaatttattt
tccagatttaaaaaagaaataaaaaagtgatTACATTTAAACTGCTGCCC
ACAAGTCCTCAATTTTCAAATCACTTGGTTTGGTTGACTATGGTCAAATA
AAATCCTTTGAAATTGCTGAAGAAGAATGGGCTACACAAGAGGGATTGGC
GTTCTCTCTGGCACCATGAGGAACAACACAGCTGAATGATGGACAATACA
TTGTCTGAAGGATTTCGTCATTAACTCCACTATGACACTTCTATAATGCT
CTACTATGTCATGTCACTGATAAGTTGGATGATTTCTTTCATGTGTTTGA
ACTTCTGAAACCAATATTCATGTAGCAATCAGATTTTTAAGAAGAATGCT
ATGGGCCAACCAAAGTTAATCAAACGAGATGGTACaggattttttgagtt
ttgagagGAGTGCTATGCTGGGAGGACGAAACAAAGTCAATCAAATGTCG
TTGCTCTATAGTATCCTGTTTGGACCCCTTACCGAATGATTGGTTCAGCT
TTTTAAGCTGCTTAGAATGCTGAAAATATTGATTAATTGTGTGTTGTTTA
CTTTTCATTGTCACGCTTGGAATCTACAGCACATTTTACTGGATAACCTG
tgaaattattatttcaaattcaagaaaacttATGAAAATATCATCCATGT
TGGTTAATAATTGACTGGTTGGAGTTCATTGATGCATGAGAATGACAGCA
AGTTTTTGACTGCAGGTCATAATGATGATCAAGTAGTATGAATGATATTG
TCGAggtttgaaatcattttttcaattattttactTTTATCTACTGTGTT
TGAAATTTCACTTGTGATGATGTCTTTAGTCTATTGATTTCTAACTAATC
TACTGGATCTGGCTTCCAATATATTATGAAATATGTCAAGCTTTTGAGCT
GACTAAACCGACATTTTGTTTTCTATTCTATTTGAGGAAGCAgaggaaaa
tgataaaatccCAAATCTAGTTTGAGAAGTTCAGTGAGGTGCTTTGActt
tcttacaaagtaaattaATAAAGAATGGAAAGTGGGAGGGTTAACAACAC
CGTTCATACATTATATCATGAAACATGAAAATGTCAGAATTAACAAAACT
GTGGCACAATGCCTTTCTCTTAGACTCAGAGGATTTTATTCCTCTGACAT
TCAGAAA Run BLAST on NCBI transcript from alignment at scaffold_171:174668..176454+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050422 ID=TCONS_00050422|Name=TCONS_00050422|organism=Clytia hemisphaerica|type=transcript|length=1787bp|location=Sequence derived from alignment at scaffold_171:174668..176454+ (Clytia hemisphaerica)
TTGACTTTTAAGGCATAAATTGTGTTTTTGAAATAAAGTAAAGGGTTGAA
TGTCtcaaattaacttttttaaatattttaaattttgattgaatttattt
tccagatttaaaaaagaaataaaaaagtgatTACATTTAAACTGCTGCCC
ACAAGTCCTCAATTTTCAAATCACTTGGTTTGGTTGACTATGGTCAAATA
AAATCCTTTGAAATTGCTGAAGAAGAATGGGCTACACAAGAGGTAAACAA
AATCATTTCATCTTTTTGTATTAAGGGAGGAAAGAAATTGTTGTATTTGT
AAAtagtatttttcaaggaaaatgtctGTATTCTTCGAGGAAGTCTGTAT
TTTTTCGAGGAAAATGTctgtattttttaaggaaaatgccTGTATTCTTC
TGGGAAAATGTCTGTATTCTTCTGGGAAAATGTCTGTATTCTTAAAGGAA
AAACGCCTGTATTCATGAAGGAAAATGTCTGTATTCTTAAGGAAAAACGT
CTGTATTCATGAAGGAAAATATCTGTATTCTTCTAGGAAAATGTCTGTAT
TCTTCTAGGAAAATGTCTATTCTTCTGGGAAAATGTCTGTATACTTCAAG
GAAATttctgtattttcaaaggaaaatctcTGTATATTCTTCTGGGAAAA
TGACTGTATTTTTCGAGGAAAATGTCTGTATTTTTCGAGGAAAATGTCTG
TATTTTTCGAGGAAAATGTCTGGATTCTTCTAAGAAAATCTCTGTATTAA
AAAAGGACATTCTTTTTTTCAGGGATTGGCGTTCTCTCTGGCACCATGAG
GAACAACACAGCTGAATGATGGACAATACATTGTCTGAAGGATTTCGTCA
TTAACTCCACTATGACACTTCTATAATGCTCTACTATGTCATGTCACTGA
TAAGTTGGATGATTTCTTTCATGTGTTTGAACTTCTGAAACCAATATTCA
TGTAGCAATCAGATTTTTAAGAAGAATGCTATGGGCCAACCAAAGTTAAT
CAAACGAGATGGTACaggattttttgagttttgagagGAGTGCTATGCTG
GGAGGACGAAACAAAGTCAATCAAATGTCGTTGCTCTATAGTATCCTGTT
TGGACCCCTTACCGAATGATTGGTTCAGCTTTTTAAGCTGCTTAGAATGC
TGAAAATATTGATTAATTGTGTGTTGTTTACTTTTCATTGTCACGCTTGG
AATCTACAGCACATTTTACTGGATAACCTGtgaaattattatttcaaatt
caagaaaacttATGAAAATATCATCCATGTTGGTTAATAATTGACTGGTT
GGAGTTCATTGATGCATGAGAATGACAGCAAGTTTTTGACTGCAGGTCAT
AATGATGATCAAGTAGTATGAATGATATTGTCGAggtttgaaatcatttt
ttcaattattttactTTTATCTACTGTGTTTGAAATTTCACTTGTGATGA
TGTCTTTAGTCTATTGATTTCTAACTAATCTACTGGATCTGGCTTCCAAT
ATATTATGAAATATGTCAAGCTTTTGAGCTGACTAAACCGACATTTTGTT
TTCTATTCTATTTGAGGAAGCAgaggaaaatgataaaatccCAAATCTAG
TTTGAGAAGTTCAGTGAGGTGCTTTGActttcttacaaagtaaattaATA
AAGAATGGAAAGTGGGAGGGTTAACAACACCGTTCATACATTATATCATG
AAACATGAAAATGTCAGAATTAACAAAACTGTGGCACAATGCCTTTCTCT
TAGACTCAGAGGATTTTATTCCTCTGACATTCAGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050422-exon-scaffold_171-1491911889:174668..174909 | TCONS_00050422-exon-scaffold_171-1491911889:174668..174909 | Clytia hemisphaerica | exon |
| TCONS_00050422-exon-scaffold_171-1510915933:174668..174909 | TCONS_00050422-exon-scaffold_171-1510915933:174668..174909 | Clytia hemisphaerica | exon |
| TCONS_00050422-exon-scaffold_171-1575043694:174668..174909 | TCONS_00050422-exon-scaffold_171-1575043694:174668..174909 | Clytia hemisphaerica | exon |
| TCONS_00050422-exon-scaffold_171-1491911889:175440..176454 | TCONS_00050422-exon-scaffold_171-1491911889:175440..176454 | Clytia hemisphaerica | exon |
| TCONS_00050422-exon-scaffold_171-1510915933:175440..176454 | TCONS_00050422-exon-scaffold_171-1510915933:175440..176454 | Clytia hemisphaerica | exon |
| TCONS_00050422-exon-scaffold_171-1575043694:175440..176454 | TCONS_00050422-exon-scaffold_171-1575043694:175440..176454 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_171 | supercontig | scaffold_171:174668..176454 + |
Blast
The following BLAST results are available for this feature:
|
