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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050396 ID=TCONS_00050396|Name=TCONS_00050396|organism=Clytia hemisphaerica|type=transcript|length=2209bpRun BLAST on NCBI protein sequence of TCONS_00050396-protein >TCONS_00050396-protein ID=TCONS_00050396-protein|Name=TCONS_00050396-protein|organism=Clytia hemisphaerica|type=polypeptide|length=622bp MSTESHLTFKDFLSIYSDQLESIPNNYWPSLFQKLTQEIFDIGEYVSLCKRun BLAST on NCBI transcript from alignment at scaffold_17:126919..145477- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00050396 ID=TCONS_00050396|Name=TCONS_00050396|organism=Clytia hemisphaerica|type=transcript|length=18559bp|location=Sequence derived from alignment at scaffold_17:126919..145477- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_17:126919..145477- >TCONS_00050396 ID=TCONS_00050396|Name=TCONS_00050396|organism=Clytia hemisphaerica|type=CDS|length=28035bp|location=Sequence derived from alignment at scaffold_17:126919..145477- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00050396 vs. Swiss-Prot (Human)
Match: TTL12 (Tubulin--tyrosine ligase-like protein 12 OS=Homo sapiens GN=TTLL12 PE=1 SV=2) HSP 1 Score: 395.586 bits (1015), Expect = 8.716e-127 Identity = 242/649 (37.29%), Postives = 345/649 (53.16%), Query Frame = 2
Query: 257 ESHLTFKDFLSIYSDQLES--IPNNYWPSLFQKLTQEIFDIGEYVSLCK----------------------DEEEGWHVMVIAEDGLNKDDPNSVFLVDHAWTYEVKFAKKQLEQHDNLLNRMKQLMDIDHSTE--KEEAIEEVLQRMWKFNKCYHRKESMLLDGDDELNNNQMQKDRDYIPLWYVMDEVGSRVNHDDNPNFAFKPFYFLETDTTFTVIFPLQDLEYGEEVTRDYQSLYTDQALKDVMLYPWE-EDRINLDEVHDDW-IEKYTKELENTEEEQPLNC-----PNGLQIKTEPPYAVCTD-SDYAKYLTNENFYLVDHEEKADIIYKQGHYRQMRKLLLEGRQYVLEQ-PNKNCLVLKNFLAETCQRHTVQKYLGREMPQHIKERRGPIWLPTTFNLNTELPQFIKHFKERQAKGQYNVWIVKPTNLARSLGIEVSDNLTQIIRLAEAGPRIVCEYISDISLFPREDTGLVKWEIRHFAFVKSVEPLEVFVHNLPYVRFANKKFELNDFTDFQKHFTNMYYRHRDKMLVFPWKEFYPEHYNKALPNVPYEKLEAEIFKMIKELFESATSRPPPFGLGRSPQCRGYYAIDMILRWRD--EEHTEIQPMLLESNFVPCMTRALEDDPELMNDIFGAFFLGTP 2092
E +F +++ L + +P YW L KL E+FD GE + + E + V+V E GL PNS+FL+DHAWT V+ A++QL+Q LL+RM LM I+ E EA+ VL+ MWKFN+ Y L G E + +P+WY+MDE GSR+ H D P+FA PF+++ +T+++PL+DL+ GEEVTRD+ TD ++ ML PW D ++L + E Y LE +E+ PL+ P+G K V TD A LT+ F L E ADI++ H++ RKL E +L Q P +N L +K+ LA +R G E GP WLP TFNL TELPQF+ +F++R+ G+ N WI KP NLARSL V+ +L IIR E+ P++V +YI LF RED G VK++IR+ ++SV PL +FV+++ ++RF+N+ F LND D++KHFT M Y + +EF PE + K P P+ ++AEIF+ ELF+ A ++PPP GL P R YA+D++L+W + + +QP +LE NF P RA P ND+F FL P
Sbjct: 23 EGAQALAEFAALHGPALRASGVPERYWGRLLHKLEHEVFDAGEVFGIMQVEEVEEEEDEAAREVRKQQPNPGNELCYKVIVTRESGLQAAHPNSIFLIDHAWTCRVEHARQQLQQVPGLLHRMANLMGIEFHGELPSTEAVALVLEEMWKFNQTYQ-----LAHGTAE----------EKMPVWYIMDEFGSRIQHADVPSFATAPFFYMPQQVAYTLLWPLRDLDTGEEVTRDFAYGETDPLIRKCMLLPWAPTDMLDLSSCTPEPPAEHYQAILEENKEKLPLDINPVVHPHGHIFK------VYTDVQQVASSLTHPRFTLTQSEADADILFNFSHFKDYRKLSQERPGVLLNQFPCENLLTVKDCLASIARRAG-----GPE---------GPPWLPRTFNLRTELPQFVSYFQQRERWGEDNHWICKPWNLARSLDTHVTKSLHSIIRHRESTPKVVSKYIESPVLFLREDVGKVKFDIRYIVLLRSVRPLRLFVYDVFWLRFSNRAFALNDLDDYEKHFTVMNYDPDVVLKQVHCEEFIPE-FEKQYPEFPWTDVQAEIFRAFTELFQVACAKPPPLGLCDYPSSRAMYAVDLMLKWDNGPDGRRVMQPQILEVNFNPDCERACRYHPTFFNDVFSTLFLDQP 635 The following BLAST results are available for this feature:
BLAST of TCONS_00050396 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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