TCONS_00050392 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050392
Unique NameTCONS_00050392
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2857

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050392 ID=TCONS_00050392|Name=TCONS_00050392|organism=Clytia hemisphaerica|type=transcript|length=2857bp
GTGTCAGAAAGCCAATTTCTTCTTCTGACAGGGGGTGGGTGTTGTATCTG
TTGTGTTCTTGCAAAGTATAGCTAAAATAACGCTGTTCTTCCTCCCTGTA
GTTTGAATCTAAtttaccttattacatgaaaaaaaatatggaagtattta
acagccttgaaattaacacgcaaaaaattaacacaaattttatttgcttt
ttcaaggacaccacggctggttttaattaagggggtttttattaacacca
aatttttcaattcgtgttaaatacttccatatttattttcatgtaataag
gtatttgttttgtttatgtgtTTGTCTGTTCAGCGGAGAAGAGCTAGAGA
AAAAAGCTATATGCTAAAAGCACAATTTAATTTTTCCAGATATTTTACAG
CTCTCCGTCCGCATCAgaaaatcagcagaaaatatGCTGCGACGGGTGAC
GCAAACAGAACTATTTTTCGACGTCAACCTAAGCAGCAGCAGAAAGATCA
AAATAACGTTCCTGcagtttcaaattttattcatcATTGCTTATGTGTTC
GTTTGTTCTGCAGAGAAAAGACAATACGTCAAAAGAACAATTTgcttttt
ccatattttttcctGCTCCTCCAGACAAAAAAAATCAGTGGAAAATATTA
TAATGATGTCGCTCGGGTAACacaaacagaacaatttttttggATGAAGG
ACCAGAATTCCTTAGCGAATTGCTTCtatgtcttttctattgtaaactgt
tcataatagaaatccatctctgtacCCTGGAGtattctgtttttataaga
aagatgAAGCtgaatgaagcagacaaagtattcatgcagtacgtctGCAC
ATTTTTTGCTACGATGTTCctgcttttcatcaaaataatatttgcagaAG
ATACCTATAAAAGCTTCCTTGTTaattaaatctaattttatcagcgtctg
ttatgaatttgagaaccTTTTATGATCCCTCTTTAAagatttcggatgta
aatataaTTTGGACTTTGTCAGTTTTAGATtattaggctgctggcatcca
ctaacggattcgtgctccttatagaggatgcttaataagaaatatttcct
ttctccagagatttgccgcctttagccgatatacggccaAAGACACTTTT
AGCTGGctagtgtctacaaatataacattacgtaatgtttaaattttctg
tgaggcactaaatcatagattggaaaatatatttggatctcgaaaaaaaa
gtaggtgGAAGGatgtttgcttctttttcttcctcctttctcgtttgatg
tggagattttgtaaaagattagaaattaaatttattgaatttaagtgccc
tgatgtatcttttgtgtgcaccaacaaaattttgcttcagaaaACTACAT
ATTGATGCTTGAATTTGAACTTGTATGGGGttgtatgagtgtataattCT
TTACCACACTgtacactggattcgttgatcactttggctccagataatta
ttttgtcagttctacagatattgttgcagattatttcaagACTTGCTGCA
ATGAATGGAGAAGATGAGATGACATCAACAACATCACGTGACCTAGATGA
TGACGAAGACAATAGTGATATTTGCAGTCTTCCAGAATGTGATTCTGATC
TTCTTGAGGTGAACCCTGACGCACCACACATTGAGCCCCAAAAGAATGAA
TCTGAGCAGTCTGAAGGAGGGGAAAGAACCAGCATTGAAGGactgtcttt
tttgaaagtcaGTGCTGATGACCTAGNTttggatataagcatccctcaag
cattttttcagccttattaagctttcgacctaagcatctctgagcctgtt
ttcggatttttatatgcttattaaaaaaacatgtatattgaAACCATCTT
TTGTTTTGGAgacgaaaatattttgaaagcaaGTTCACCTTTATTATTAC
TTTACCAGTGCAACCAATTCTCCCATCTTTAATTTCAGCATCTGTTACAG
AGTTAAACAGCCAAGGAAACATATCAACTAATTCTATCGATAAAACGAAT
TCCGCCACAAGCAgaacaaAGATCTCCACAGATGGTTATTCATCACCGGG
CAGTGGGCAAATACAACTGTGGCAATTCTTATTGGAGCTGTTAACAGAGA
AAAACATGAAAGACATAATTATGTGGGTGGGCGAAGAAGGTGCTTTCAAA
TTGGTTGACCCTGAACGAGTTGCTCAGTTATGGGGTGAACGCAAAAACAA
ACCCTCCATGAACTACGAAAAATTGAGTCGAGCCTTGAGGTATTACTACG
ATGGCGACTTGATACACAAAGTGTGTGGTAAGCGCTTCGTTTATCAGTTT
GTTTGTGATCTGAAGATGTTGTTGGGGTACAGTGCTGCAGAACTTAGTCA
ATTGGTGAGCGAGAGCAGCGATGATTGAAACTTATCTATACTTACATTAC
AGTATAGACACGACGATTGTTGTGAACGCTTATCATCTTTTAGAGAataa
agaatatttcttaaccctttaagtgccacggtcatttttttaagtttaaa
aaaaatcgctagttcgaactttaaaggcttatatctccggatctagaagg
agttagaagctcgttggATAGCGTTGGATAGNGATAGCTTCATACCAATC
CTTGGGATATTTTGCGATATTATCCATGTATCGTTGGTTAGCTTTCCATT
CTTCCTCCTAAATTCAtaaaacttgaattttttttatccagAAAATCCAA
CAATTtccaaaatctatttttatttgaggcttactttaggcgtaccaact
ttcgcgattttcgcgaattttgacctttttcgcgaaagtaaatgtctttg
aaaattc
Run BLAST on NCBI

transcript from alignment at scaffold_17:87885..97197-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050392 ID=TCONS_00050392|Name=TCONS_00050392|organism=Clytia hemisphaerica|type=transcript|length=9313bp|location=Sequence derived from alignment at scaffold_17:87885..97197- (Clytia hemisphaerica)
GTGTCAGAAAGCCAATTTCTTCTTCTGACAGGGGGTGGGTGTTGTATCTG
TTGTGTTCTTGCAAAGTATAGCTAAAATAACGCTGTTCTTCCTCCCTGTA
GTTTGAATCTAATTTACCTTATTACATGAAAAAAAATATGGAAGTATTTA
ACAGCCTTGAAATTAACACGCAAAAAATTAACACAAATTTTATTTGCTTT
TTCAAGGACACCACGGCTGGTTTTAATTAAGGGGGTTTTTATTAACACCA
AATTTTTCAATTCGTGTTAAATACTTCCATATTTATTTTCATGTAATAAG
GTATTTGTTTTGTTTATGTGTTTGTCTGTTCAGCGGAGAAGAGCTAGAGA
AAAAAGCTATATGCTAAAAGCACAATTTAATTTTTCCAGATATTTTACAG
CTCTCCGTCCGCATCAGAAAATCAGCAGAAAATATGCTGCGACGGGTGAC
GCAAACAGAACTATTTTTCGACGTCAACCTAAGCAGCAGCAGAAAGATCA
AAATAACGTTCCTGCAGTTTCAAATTTTATTCATCATTGCTTATGTGTTC
GTTTGTTCTGCAGAGAAAAGACAATACGTCAAAAGAACAATTTGCTTTTT
CCATATTTTTTCCTGCTCCTCCAGACAAAAAAAATCAGTGGAAAATATTA
TAATGATGTCGCTCGGGTAACACAAACAGAACAATTTTTTTGGATGAAGG
ACCAGAATTCCTTAGCGAATTGCTTCTATGTCTTTTCTATTGTAAACTGT
TCATAATAGAAATCCATCTCTGTACCCTGGAGTATTCTGTTTTTATAAGA
AAGATGAAGCTGAATGAAGCAGACAAAGTATTCATGCAGTACGTCTGCAC
ATTTTTTGCTACGATGTTCCTGCTTTTCATCAAAATAATATTTGCAGAAG
ATACCTATAAAAGCTTCCTTGTTAATTAAATCTAATTTTATCAGCGTCTG
TTATGAATTTGAGAACCTTTTATGATCCCTCTTTAAAGATTTCGGATGTA
AATATAATTTGGACTTTGTCAGTTTTAGATTATTAGGCTGCTGGCATCCA
CTAACGGATTCGTGCTCCTTATAGAGGATGCTTAATAAGAAATATTTCCT
TTCTCCAGAGATTTGCCGCCTTTAGCCGATATACGGCCAAAGACACTTTT
AGCTGGCTAGTGTCTACAAATATAACATTACGTAATGTTTAAATTTTCTG
TGAGGCACTAAATCATAGATTGGAAAATATATTTGGATCTCGAAAAAAAA
GTAGGTGGAAGGATGTTTGCTTCTTTTTCTTCCTCCTTTCTCGTTTGATG
TGGAGATTTTGTAAAAGATTAGAAATTAAATTTATTGAATTTAAGTGCCC
TGATGTATCTTTTGTGTGCACCAACAAAATTTTGCTTCAGAAAACTACAT
ATTGATGCTTGAATTTGAACTTGTATGGGGTTGTATGAGTGTATAATTCT
TTACCACACTGTACACTGGATTCGTTGATCACTTTGGCTCCAGATAATTA
TTTTGTCAGTTCTACAGATATTGTTGCAGATTATTTCAAGGTATTTTTGT
TATGTATATACAGTACATTTTGGGGGTTATGTTGAATATTTATGAAATTA
CTTTTGTATGGTTCTACAAAAGGGAGTGTTGTTATTCCCTTGTTAAATGT
TGAAACAAACGAACTTTTCTCCAGCTTTGGCATTCACTTTTCGATACTGT
GTGGCCTTTGTGTTTATCTTCAATTCTTTTGAAGAGATTGGAGTGTTTTT
TGGTTGTTTTCTTTCACTTTTTTGTTGATATTTGTATTTTTGAGTTTCGA
CCAAAGAGCTGAAGGAAAAGTTTTGATAAATTTACAGACCAGATATCTTA
TAAAAGCGAAAGTCAAAAATAAATTTACAGACTGTTTTTTATCTTTCTTT
CTGTTTTCTTTTTCTGGTCTGGGATTCGAATTTCGAATGTAAACATTCTA
TTGAAAACGTTCAAAATGATCGTTTTTGCGCGCACATCAATGTCAATCAA
ATTATTAACTCGCCAAGATTCTGTAAAGTACATCGAATTAAAAAAAACCA
AACCGGGAAGCGGTTGGTAGATCATTAAGCAGACCTATACTACCTGGGGT
TTTGTAGAGGTCTACGATTCTGACCACAAGATTATGGGATTTCGAGTATG
GGCCGATTTGACTTTCGTTTTCAGTGGTTTCATTTTCGATTTCAAGACAA
CGTCTTAGCGAAAGGACGAAACACATGCCTGCGTGTAGATTTGTCTGTAA
ACAAACCCGATATCTACGGCTAATTTCAAAATAAACGTGAGATACACTCT
GGTACAGAGTACGCGTAGATATATGGAGCTTCTATTGTTGGACCTACCCC
GGTGGAGGTCCTATAAATTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTCTGATTTTTTGCACAAAGATGCA
TAACTATAAACCCTCGAATGTGACGGAGCCCGATTTTCAAAAAAAAAATT
TTTGGGCAAATTTGGGCAAAAAAACGGCTAAAAAACGGGTTTTTTGGACA
TTGTGAAAAATTAGGTCGTTAATTTTTTCTATTTTTTTGCATGAAAGTAG
GGTACTATCGTAGGTAAAAGATGGCTTAAGCAGATTTTTGCAAAAAAATT
TTGTTGGCTCAAAAAACGCATGTTTATCTATAAGAATCACTATTAATAAG
CATACATCAATGTTCTTAGTCAAATTACTCAATTTTTTTTATGAGATAGA
TGTTTTTTTATTGCTCATGAGGGCTTACTTTTGAAGAATATGTGTGTTTA
GACATGAACCTTTGGTTGCTTGGCGTGTTTTTATAGAAAAACTGGCCAAA
TTCGATATTTTTTACANNNNNNNNNNNNNCAATTACTTAGGTATTAGCTT
TTCTCGAGATTGGCTCTTTCATTCTTTACGATTTTTTGAACAAAGATGCA
TAACTATAAACCCTCGAATGTGGCGGAGCTCAATTTTTGGAGAAAAAAAT
TTTGGGGTAAATTTCAGCTAAAAAACGGCTAAAAAAAGGGTTTTTTGGAC
TTGTTATTTTCTGACTTTTTGCATGAAAGTAGGTAAAAGATGGCTCAAGC
AGACTTTTGTAAAAAAAGATTTTTTCAAAAAACGCATATTTATTTATAAG
AATCACTATTAATAAGCATACAGCAATGTTCTTAAAATTACTGAATTTTT
TGATGAGATATGTTTTTTTGCTTTCGAAGTCTTGAATATCAAAGAATATT
TCAAGAGCATGAAATTTTGGTTTCTAAACGTGTTTTTTATAAGAAACAAA
CGACTAATTTTAATAGATCGTCACTATTTGTGTTCTGAATGATTGTTTAA
TGATCACGCTTATGTAGATATAGCCTGGGAATCCATGCTATGATTTCTTC
TTTGATAAACTGATGGCGAAATGTATAGCATGGTATAGGCTGAGAGTTTG
AATTTCTCAGATCCTAATAACGGTTGAAAACATAGCCAATCAAATTTTGT
TATTCTTTTACTGGTCACACTTTCTTAGAGAAAGCGCAACTTCCGAAATT
TGGTTTTTGTCTTAGTAAGTGAGGACAGCGCTAAATTCAAATTTCCCACT
GTAAAAAATGTGAGTCCAATATTGGACTCACAGCTCGAACCCGTCTTGTG
TACATCAAATTATTAAAAAACACACGACGGGTCTCCTGTCTAATGTAGAT
ATCAATTATATATGTGTTAAATGCATAACCAGGTAGGTCCATAAAAGTAT
CACTTGTTTATTATTCTATGCTTTGCTTAGTCATAGACTTGCTGCAATGA
ATGGAGAAGATGAGATGACATCAACAACATCACGTGACCTAGATGATGAC
GAAGACAATAGTGATATTTGCAGTCTTCCAGAATGTGATTCTGATCTTCT
TGGTTAGTTTATTTTTCAGTTTATTTTTCCTAAATCAGTTTTTTGTTACT
CAAGGGATCAAATGAATGCTATTTTTTTTGCACCATTTTCTACATAAATT
CGAAACATTTTTTGAACCCTTTGTAAAGTATTTTCTCGATGAGATTGATC
CACATGTCCACTGATCTTATAAGATTTCGGCATGAATTAGAAGCATTCTT
TTGAAGCCTTTGTAAAGTATTTTCTTAGATATTGAATAAATCCCTTCATT
ATTAGAGGTGAACCCTGACGCACCACACATTGAGCCCCAAAAGAATGAAT
CTGAGCAGTCTGAAGGAGGGGAAAGAACCAGCATTGAAGGACTGTCTTTT
TTGAAAGTCAGTGCTGATGACCTAGNTTTGGATATAAGCATCCCTCAAGC
ATTTTTTCAGCCTTATTAAGCTTTCGACCTAAGCATCTCTGAGCCTGTTT
TCGGATTTTTATATGCTTATTAAAAAAACATGTATATTGAAACCATCTTT
TGTTTTGGAGACGAAAATATTTTGAAAGCAAGTTCACCTTTATTATTACT
TTACCAGTGCAACCAATTCTCCCATCTTTAATTTCAGCATCTGTTACAGA
GTTAAACAGCCAAGGAAACATATCAACTAATTCTATCGATAAAACGAATT
CCGCCACAAGCAGTACGTATCNATGTCATTCTGGTCGATCAAGTGAATGA
AGAAGCCATCTCCAACGATTCAACGAAGAAGAGAGTAATGAAAAACGATG
AAGGAGGAGGAGGAACGGAAAGAGAGAAAGAAGCCTCGAAGGAAAGAGTG
AGCACACTCAAAGAGGAGACACCACCAGCCGCCAAGAAAGCTTGTTTGAA
TGAGAGAGGAAGTACCCCTTTCATTTTGATGCAAGAAATGTTACGTGGTG
AAACTGATCTCAAACTACCACCAGGTGATTTTATTTCTTCAAATTGCCCA
ATTAAAAGGTTTTGTACAAATATTTTTCACAAAAGTTTGCAAGCCTTTTT
TTGTACGAAATAGTACGAAATTGATATTAACTCGCATATGCACCGATAGA
GTTAGTTGATTTTGGTTCCGTTTCTTNAAGGATTTGGTGAAAACTGTTTT
CGGCGAGCCTAGATATTCGAAATGTTTCACTTTTGGCCAGAACTCATTTA
GACATGTGGGTGATTTAAAAAAATATGCATAGATTTAGCCCAGCTTTAAC
CCACCAATATCACGGTTGACTTCTGCNTATGCTGGGAACTCATTTTTAGT
GGGACTTTAACCCACTTGCACACTTTGAATCTCGAATACGTCAATTCGAT
TGGTTCTTTGTCGTTTTATTTAAATTAGTATTATAACATTAACCCATAAT
TCACAAGGTCCATTAATCAATCTTATTTGTTCTTTATTTAACAAAGATAC
GGAGGGAATGCTGTTAACAAAATAAAGTTTGTATTGATTTCTAGATCCAA
AGCAATGGAGTGTCGAGGAAGTTTCGAAATTCATGGAATGGTTGGTCAGT
CAGCTTCGTGTAAGCAAACCAACCACGCCGTACCAAAAATTCCACATTGA
TGGAAAATTATTGTATAAAATTCGTAAAAGAAGTCTTCAGCGTTTCTTTA
CCGATAGTGCGGTTGACATCCTTTGGATACACGTGNGACCTGACAAAAGT
TTTTTGACTGTCTTCTGAAATTTTTAAACGAAGAAACGATGTAAAAATTA
CTGCTTTCAGGATAATTTTTCAAGAAACGCGGAATTTTTTCTTTGTTTCA
AATGCAAAAATGTCTTTTGAATCAGAAAATAGGGCCAAATTCCAGTTCAA
AATCGAATTTTGAATGCAAATTTAGACCTGCAAATCCCTTTTTAAACACA
CACGCACTAGTTATTTTGTATGTTTTCTGGTGATAGAATTTCAAAAAGAA
CCTCAATTTGAGGTGCTCATCAACTTTCCCTTTGAGGTTTTTTCTACTCT
TGGGCAAAAATTGCTTCAGTAAAAACAAAAATAACTTTTATTTTTAGGAA
CAAAGATCTCCACAGATGGTTATTGTAAGTTTCCTTTGTTCTTTTATTTA
TATAACACCCTGTTTTGTTCGTCTTTTATCTTTAGAGTCTTTAAATTGTA
ATTTAATTTTTGTAAGCTATTTACAGTGATTTAACACACTTTAGAAATTG
TTACTCATAATTTAGGGGTTGAAGCAAGCTCGTTGATTTTTATTGGTTGA
GCATTAGGTTGACGTTGCTCTTACCCTTTCCCCCATTTTTGTGTTTTCTT
TTTTTCTTTGATTGATCATATGAAAATCAAGTGAAAAATTTATGAGAAAG
AAGAAAAACCACAACGCTTTCATTCATAACACGTTTGGAAGTTTTCTTTT
TTAAGTAAATGTTTTTAAAGTTTATCAGAGATTTTTCAACGATTTATCTC
CTTTACGCCAAAATAGTCGATTTATGTCCATAGATATAAAACCCGAAGGG
CTAGATGTCGCACTTTAAGCCATCACAGGCAAAAAAAGTGAATATCGCAA
AAAATATTGCTGCTAACTGTTTTCGAAACCCGCGAAGCTTCTGATTGGGC
AAGCGCTGAAATTCTATTGTAATGTCACGTGACTTTTGGCACACTTTTCA
GCACTCCATCTAGCCCTTCGGGCTTTATAAATCCATGTTTATGCCCCTTA
AAATCAAGTGGTCAAGAGCTANTTTGTTTCAAATGCCAAAATGTCTTTTG
AATCAGAAAATAGGGCCAAATTCCAGTTCAAAATCGAATTTTGAATGCAA
ATTTAGACCTGCAAATCCCTTTTTAAACACACACGCACTAGTTATTTTGT
ATGTTTTCTGGTGATAGAATTTCAAAAAGAACCTCAATTTGAGGTGCTCA
TCAACTTTCCCTTTGAGGTTTTTTCTACTCTTGGGCAAAAATTGCTTCAG
TAAAAACAAAAATAACTTTTATTTTTAGGAGCAAAGATCTCCACAGATGG
TTATTGTAAGTTTCCTTTGTTCTTTTATTTATATAACACCCTGTTTTGTT
CGTCTTTTATCTTTAGAGTCTTTAAATTGTAATTTAATTTTTGTAAGCTA
TTTACAGTGATTTAACACGCTTTAGAAATTGTTACTCATAGTTTAGGGGT
TGAAGCAAGCTCGTTGATTTTTATTGGTTGAGCATTAGGTTGACGTTGCT
CTTACCCTTTCCCCCATTTTTGTGTTTTCTTTTTTTCTTTGATTGATCAT
ATGAAAATCAAGTGAAAAATTTATGAGAAAGAAGAAAAACCACAACGCTT
TCATTCATAACACGTTTGGAAGTTTTCTTTTTTAAGTAAATGTTTTTAAA
GTTTATCAGAGATTTTTCAACGATTTATCTCCTTTACGCCAAAATAGTCG
ATTTATGTCCATAGATATAAAACCCGAAGGGCTAGATGTCGCACTTTAAG
CCATCACAGGCAAAAAAAGTGAATATCGCAAAAAATATTGCTGCTAACTG
TTTTCGAAACCCGCGAAGCTTCTGATTGGGCAAGCGCTGAAATTCTATTG
TAATGTCACGTGACTTTTGGCACACTTTTCAGCACTCCATCTAGCCCTTC
GGGCTTTATAAATCCATGTTTATGCCCCTTAAAATCAAGTGGTCAAGAGC
TATGGCCAAAAGTCTTGGACTTTGTCTAGAATTTCGACCTGTTATTTTGA
CGTGTATGCCGGGTGACCCACGAAAAAGTATTATGGGTTGATGACAAATG
TGCCCGTAATTTTACGACATTAATTTTTCATTGTGATGATGAAGTGCAAA
ATTTGGTGTAGGGTATAATTCAAATTCGGTTTAGTGGTTCAAAATATTTT
AAGGTATTAAATTAACGCTAAACAATAGAGAATAGCTCGTTTTTTAATAT
TTGTGTAATTTTTATGACGCGATTAATGATCGAAGCTAATTTATAACCAT
ATAGATGTAACAGAATCATTCAATGAATTAGCCGTTTTCGTAACTGAGAA
ACTACAGTTGCGTAATAATATTTATTTTATAGCAAGTCTTCACTTGTGGC
GAGGCCATCAAAGCGCAACCAATACACCTTTTCGACCGTAGCCGCCAATT
GCTGCGCGGGCATTTTTTTGTCCGCTTTATCCCACTAAAACCGTCCCAGT
CCTTTTTTTGCACCTATAGACAATAGAAAAATGTGTCAAAAAAAGGATTG
GATCGAGTTTAGTGGGATAATCAAATAATTAAGTGGCACGCGCCTGACCG
CGCGACTACGGTCGAAAAGGTGTATTTGCGACCGTTATTCATTGATTGAT
TGTAGAAGTGCTTATATTTACCCATCGAAATTTTATAGAGAGTTAACTCG
GCTCTGGCCACGAGCTAGTATATAGTGGAAACTTTACTTTAACTCCAACC
TCTATAACTCGAATGTCTCTAACTACTTGTCTTCTCAGTTAAGAGTGCGT
TATAAACCTCACTCCACGCTCCCCGTCCGCGGGTTCGAAAGAAGTTTTCC
ATACAACCGAATAATGTTTTGTTATGAGAAACTTTTTTCAATAAAAACTG
CACTCTGTGGAGCACCTACTATGAAACTTTCATCTATCATTTTTAGCATC
ACCGGGCAGTGGGCAAATACAACTGTGGCAATTCTTATTGGAGCTGTTAA
CAGAGAAAAACATGAAAGACATAATTATGTGGGTGGGCGAAGAAGGTGCT
TTCAAATTGGTTGACCCTGAACGAGTTGCTCAGTTATGGGGTGAACGCAA
AAACAAACCCTCCATGAACTACGAAAAATTGAGTCGAGCCTTGAGGTATT
ACTACGATGGCGACTTGATACACAAAGTGTGTGGTAAGCGCTTCGTTTAT
CAGTTTGTTTGTGATCTGAAGATGTTGTTGGGGTACAGTGCTGCAGAACT
TAGTCAATTGGTGAGCGAGAGCAGCGATGATTGAAACTTATCTATACTTA
CATTACAGTATAGACACGACGATTGTTGTGAACGCTTATCATCTTTTAGA
GAATAAAGAATATTTCTTAACCCTTTAAGTGCCACGGTCATTTTTTTAAG
TTTAAAAAAAATCGCTAGTTCGAACTTTAAAGGCTTATATCTCCGGATCT
AGAAGGAGTTAGAAGCTCGTTGGATAGCGTTGGATAGNGATAGCTTCATA
CCAATCCTTGGGATATTTTGCGATATTATCCATGTATCGTTGGTTAGCTT
TCCATTCTTCCTCCTAAATTCATAAAACTTGAATTTTTTTTATCCAGAAA
ATCCAACAATTTCCAAAATCTATTTTTATTTGAGGCTTACTTTAGGCGTA
CCAACTTTCGCGATTTTCGCGAATTTTGACCTTTTTCGCGAAAGTAAATG
TCTTTGAAAATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031908XLOC_031908Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050392-exon-scaffold_17-1575043694:95658..97197TCONS_00050392-exon-scaffold_17-1575043694:95658..97197Clytia hemisphaericaexon
TCONS_00050392-exon-scaffold_17-1575043694:93196..93311TCONS_00050392-exon-scaffold_17-1575043694:93196..93311Clytia hemisphaericaexon
TCONS_00050392-exon-scaffold_17-1575043694:92536..92942TCONS_00050392-exon-scaffold_17-1575043694:92536..92942Clytia hemisphaericaexon
TCONS_00050392-exon-scaffold_17-1575043694:91174..91200TCONS_00050392-exon-scaffold_17-1575043694:91174..91200Clytia hemisphaericaexon
TCONS_00050392-exon-scaffold_17-1575043694:87885..88651TCONS_00050392-exon-scaffold_17-1575043694:87885..88651Clytia hemisphaericaexon
TCONS_00050392-exon-scaffold_17-1510915933:95658..97197TCONS_00050392-exon-scaffold_17-1510915933:95658..97197Clytia hemisphaericaexon
TCONS_00050392-exon-scaffold_17-1510915933:93196..93311TCONS_00050392-exon-scaffold_17-1510915933:93196..93311Clytia hemisphaericaexon
TCONS_00050392-exon-scaffold_17-1510915933:92536..92942TCONS_00050392-exon-scaffold_17-1510915933:92536..92942Clytia hemisphaericaexon
TCONS_00050392-exon-scaffold_17-1510915933:91174..91200TCONS_00050392-exon-scaffold_17-1510915933:91174..91200Clytia hemisphaericaexon
TCONS_00050392-exon-scaffold_17-1510915933:87885..88651TCONS_00050392-exon-scaffold_17-1510915933:87885..88651Clytia hemisphaericaexon
TCONS_00050392-exon-scaffold_17-1491911889:95658..97197TCONS_00050392-exon-scaffold_17-1491911889:95658..97197Clytia hemisphaericaexon
TCONS_00050392-exon-scaffold_17-1491911889:93196..93311TCONS_00050392-exon-scaffold_17-1491911889:93196..93311Clytia hemisphaericaexon
TCONS_00050392-exon-scaffold_17-1491911889:92536..92942TCONS_00050392-exon-scaffold_17-1491911889:92536..92942Clytia hemisphaericaexon
TCONS_00050392-exon-scaffold_17-1491911889:91174..91200TCONS_00050392-exon-scaffold_17-1491911889:91174..91200Clytia hemisphaericaexon
TCONS_00050392-exon-scaffold_17-1491911889:87885..88651TCONS_00050392-exon-scaffold_17-1491911889:87885..88651Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:87885..97197 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.984297	0.802406	1.05621	1.06516	4.48764	2.6715	2.47707	2.17294	1.16221	1.09335	1.04341	0.855872	1.7519	1.25777	1.01958	0.996423	1.07463	1.34942	1.23906	0.944742	1.37306	2.01097	0.998206	1.15748	1.01924	1.1812	1.08797	0.800485	1.108	0.730227
Blast
[Close]
BLAST of TCONS_00050392 vs. Swiss-Prot (Human)
Match: GABPA (GA-binding protein alpha chain OS=Homo sapiens GN=GABPA PE=1 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 7.851e-52
Identity = 103/178 (57.87%), Postives = 124/178 (69.66%), Query Frame = 2 
Query: 1913 RKYF----ESKFTFIITL--PVQPILPSLISASVTELNSQGNISTNSIDKTNSATSRTKISTDGYSSPGS-----GQIQLWQFLLELLTEKNMKDIIMWVGEEGAFKLVDPERVAQLWGERKNKPSMNYEKLSRALRYYYDGDLIHKVCGKRFVYQFVCDLKMLLGYSAAELSQLVSE 2413
            RKY     E +   I+T+  PVQ I  S+ SA+ T +        NS  K        +IS +  SSPG+     GQIQLWQFLLELLT+K+ +D I WVG+EG FKL  PE VAQ WG+RKNKP+MNYEKLSRALRYYYDGD+I KV GKRFVY+FVCDLK L+GYSAAEL++LV+E
Sbjct:  248 RKYVLASQEQQMNEIVTIDQPVQIIPASVQSATPTTIKV-----INSSAKAAKVQRAPRISGEDRSSPGNRTGNNGQIQLWQFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYYDGDMICKVQGKRFVYKFVCDLKTLIGYSAAELNRLVTE 420
The following BLAST results are available for this feature:
BLAST of TCONS_00050392 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GABPA7.851e-5257.87GA-binding protein alpha chain OS=Homo sapiens GN=... [more]
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