TCONS_00050391 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050391
Unique NameTCONS_00050391
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1929

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050391 ID=TCONS_00050391|Name=TCONS_00050391|organism=Clytia hemisphaerica|type=transcript|length=1929bp
attttatcagcgtctgttatgaatttgagaaccTTTTATGATCCCTCTTT
AAagatttcggatgtaaatataaTTTGGACTTTGTCAGTTTTAGATtatt
aggctgctggcatccactaacggattcgtgctccttatagaggatgctta
ataagaaatatttcctttctccagagatttgccgcctttagccgatatac
ggccaAAGACACTTTTAGCTGGctagtgtctacaaatataacattacgta
atgtttaaattttctgtgaggcactaaatcatagattggaaaatatattt
ggatctcgaaaaaaaagtaggtgGAAGGatgtttgcttctttttcttcct
cctttctcgtttgatgtggagattttgtaaaagattagaaattaaattta
ttgaatttaagtgccctgatgtatcttttgtgtgcaccaacaaaattttg
cttcagaaaACTACATATTGATGCTTGAATTTGAACTTGTATGGGGttgt
atgagtgtataattCTTTACCACACTgtacactggattcgttgatcactt
tggctccagataattattttgtcagttctacagatattgttgcagattat
ttcaagTCATAGACTTGCTGCAATGAATGGAGAAGATGAGATGACATCAA
CAACATCACGTGACCTAGATGATGACGAAGACAATAGTGATATTTGCAGT
CTTCCAGAATGTGATTCTGATCTTCTTGAGGTGAACCCTGACGCACCACA
CATTGAGCCCCAAAAGAATGAATCTGAGCAGTCTGAAGGAGGGGAAAGAA
CCAGCATTGAAGGactgtcttttttgaaagtcaGTGCTGATGACCTAGNT
ttggatataagcatccctcaagcattttttcagccttattaagctttcga
cctaagcatctctgagcctgttttcggatttttatatgcttattaaaaaa
acatgtatattgaAACCATCTTTTGTTTTGGAgacgaaaatattttgaaa
gcaaGTTCACCTTTATTATTACTTTACCAGTGCAACCAATTCTCCCATCT
TTAATTTCAGCATCTGTTACAGAGTTAAACAGCCAAGGAAACATATCAAC
TAATTCTATCGATAAAACGAATTCCGCCACAAGCAgaacaaAGATCTCCA
CAGATGGTTATTCATCACCGGGCAGTGGGCAAATACAACTGTGGCAATTC
TTATTGGAGCTGTTAACAGAGAAAAACATGAAAGACATAATTATGTGGGT
GGGCGAAGAAGGTGCTTTCAAATTGGTTGACCCTGAACGAGTTGCTCAGT
TATGGGGTGAACGCAAAAACAAACCCTCCATGAACTACGAAAAATTGAGT
CGAGCCTTGAGGTATTACTACGATGGCGACTTGATACACAAAGTGTGTGG
TAAGCGCTTCGTTTATCAGTTTGTTTGTGATCTGAAGATGTTGTTGGGGT
ACAGTGCTGCAGAACTTAGTCAATTGGTGAGCGAGAGCAGCGATGATTGA
AACTTATCTATACTTACATTACAGTATAGACACGACGATTGTTGTGAACG
CTTATCATCTTTTAGAGAataaagaatatttcttaaccctttaagtgcca
cggtcatttttttaagtttaaaaaaaatcgctagttcgaactttaaaggc
ttatatctccggatctagaaggagttagaagctcgttggATAGCGTTGGA
TAGNGATAGCTTCATACCAATCCTTGGGATATTTTGCGATATTATCCATG
TATCGTTGGTTAGCTTTCCATTCTTCCTCCTAAATTCAtaaaacttgaat
tttttttatccagAAAATCCAACAATTtccaaaatctatttttatttgag
gcttactttaggcgtaccaactttcgcgattttcgcgaattttgaccttt
ttcgcgaaagtaaatgtctttgaaaattc
Run BLAST on NCBI

transcript from alignment at scaffold_17:87885..96263-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050391 ID=TCONS_00050391|Name=TCONS_00050391|organism=Clytia hemisphaerica|type=transcript|length=8379bp|location=Sequence derived from alignment at scaffold_17:87885..96263- (Clytia hemisphaerica)
ATTTTATCAGCGTCTGTTATGAATTTGAGAACCTTTTATGATCCCTCTTT
AAAGATTTCGGATGTAAATATAATTTGGACTTTGTCAGTTTTAGATTATT
AGGCTGCTGGCATCCACTAACGGATTCGTGCTCCTTATAGAGGATGCTTA
ATAAGAAATATTTCCTTTCTCCAGAGATTTGCCGCCTTTAGCCGATATAC
GGCCAAAGACACTTTTAGCTGGCTAGTGTCTACAAATATAACATTACGTA
ATGTTTAAATTTTCTGTGAGGCACTAAATCATAGATTGGAAAATATATTT
GGATCTCGAAAAAAAAGTAGGTGGAAGGATGTTTGCTTCTTTTTCTTCCT
CCTTTCTCGTTTGATGTGGAGATTTTGTAAAAGATTAGAAATTAAATTTA
TTGAATTTAAGTGCCCTGATGTATCTTTTGTGTGCACCAACAAAATTTTG
CTTCAGAAAACTACATATTGATGCTTGAATTTGAACTTGTATGGGGTTGT
ATGAGTGTATAATTCTTTACCACACTGTACACTGGATTCGTTGATCACTT
TGGCTCCAGATAATTATTTTGTCAGTTCTACAGATATTGTTGCAGATTAT
TTCAAGGTATTTTTGTTATGTATATACAGTACATTTTGGGGGTTATGTTG
AATATTTATGAAATTACTTTTGTATGGTTCTACAAAAGGGAGTGTTGTTA
TTCCCTTGTTAAATGTTGAAACAAACGAACTTTTCTCCAGCTTTGGCATT
CACTTTTCGATACTGTGTGGCCTTTGTGTTTATCTTCAATTCTTTTGAAG
AGATTGGAGTGTTTTTTGGTTGTTTTCTTTCACTTTTTTGTTGATATTTG
TATTTTTGAGTTTCGACCAAAGAGCTGAAGGAAAAGTTTTGATAAATTTA
CAGACCAGATATCTTATAAAAGCGAAAGTCAAAAATAAATTTACAGACTG
TTTTTTATCTTTCTTTCTGTTTTCTTTTTCTGGTCTGGGATTCGAATTTC
GAATGTAAACATTCTATTGAAAACGTTCAAAATGATCGTTTTTGCGCGCA
CATCAATGTCAATCAAATTATTAACTCGCCAAGATTCTGTAAAGTACATC
GAATTAAAAAAAACCAAACCGGGAAGCGGTTGGTAGATCATTAAGCAGAC
CTATACTACCTGGGGTTTTGTAGAGGTCTACGATTCTGACCACAAGATTA
TGGGATTTCGAGTATGGGCCGATTTGACTTTCGTTTTCAGTGGTTTCATT
TTCGATTTCAAGACAACGTCTTAGCGAAAGGACGAAACACATGCCTGCGT
GTAGATTTGTCTGTAAACAAACCCGATATCTACGGCTAATTTCAAAATAA
ACGTGAGATACACTCTGGTACAGAGTACGCGTAGATATATGGAGCTTCTA
TTGTTGGACCTACCCCGGTGGAGGTCCTATAAATTAANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGATTT
TTTGCACAAAGATGCATAACTATAAACCCTCGAATGTGACGGAGCCCGAT
TTTCAAAAAAAAAATTTTTGGGCAAATTTGGGCAAAAAAACGGCTAAAAA
ACGGGTTTTTTGGACATTGTGAAAAATTAGGTCGTTAATTTTTTCTATTT
TTTTGCATGAAAGTAGGGTACTATCGTAGGTAAAAGATGGCTTAAGCAGA
TTTTTGCAAAAAAATTTTGTTGGCTCAAAAAACGCATGTTTATCTATAAG
AATCACTATTAATAAGCATACATCAATGTTCTTAGTCAAATTACTCAATT
TTTTTTATGAGATAGATGTTTTTTTATTGCTCATGAGGGCTTACTTTTGA
AGAATATGTGTGTTTAGACATGAACCTTTGGTTGCTTGGCGTGTTTTTAT
AGAAAAACTGGCCAAATTCGATATTTTTTACANNNNNNNNNNNNNCAATT
ACTTAGGTATTAGCTTTTCTCGAGATTGGCTCTTTCATTCTTTACGATTT
TTTGAACAAAGATGCATAACTATAAACCCTCGAATGTGGCGGAGCTCAAT
TTTTGGAGAAAAAAATTTTGGGGTAAATTTCAGCTAAAAAACGGCTAAAA
AAAGGGTTTTTTGGACTTGTTATTTTCTGACTTTTTGCATGAAAGTAGGT
AAAAGATGGCTCAAGCAGACTTTTGTAAAAAAAGATTTTTTCAAAAAACG
CATATTTATTTATAAGAATCACTATTAATAAGCATACAGCAATGTTCTTA
AAATTACTGAATTTTTTGATGAGATATGTTTTTTTGCTTTCGAAGTCTTG
AATATCAAAGAATATTTCAAGAGCATGAAATTTTGGTTTCTAAACGTGTT
TTTTATAAGAAACAAACGACTAATTTTAATAGATCGTCACTATTTGTGTT
CTGAATGATTGTTTAATGATCACGCTTATGTAGATATAGCCTGGGAATCC
ATGCTATGATTTCTTCTTTGATAAACTGATGGCGAAATGTATAGCATGGT
ATAGGCTGAGAGTTTGAATTTCTCAGATCCTAATAACGGTTGAAAACATA
GCCAATCAAATTTTGTTATTCTTTTACTGGTCACACTTTCTTAGAGAAAG
CGCAACTTCCGAAATTTGGTTTTTGTCTTAGTAAGTGAGGACAGCGCTAA
ATTCAAATTTCCCACTGTAAAAAATGTGAGTCCAATATTGGACTCACAGC
TCGAACCCGTCTTGTGTACATCAAATTATTAAAAAACACACGACGGGTCT
CCTGTCTAATGTAGATATCAATTATATATGTGTTAAATGCATAACCAGGT
AGGTCCATAAAAGTATCACTTGTTTATTATTCTATGCTTTGCTTAGTCAT
AGACTTGCTGCAATGAATGGAGAAGATGAGATGACATCAACAACATCACG
TGACCTAGATGATGACGAAGACAATAGTGATATTTGCAGTCTTCCAGAAT
GTGATTCTGATCTTCTTGGTTAGTTTATTTTTCAGTTTATTTTTCCTAAA
TCAGTTTTTTGTTACTCAAGGGATCAAATGAATGCTATTTTTTTTGCACC
ATTTTCTACATAAATTCGAAACATTTTTTGAACCCTTTGTAAAGTATTTT
CTCGATGAGATTGATCCACATGTCCACTGATCTTATAAGATTTCGGCATG
AATTAGAAGCATTCTTTTGAAGCCTTTGTAAAGTATTTTCTTAGATATTG
AATAAATCCCTTCATTATTAGAGGTGAACCCTGACGCACCACACATTGAG
CCCCAAAAGAATGAATCTGAGCAGTCTGAAGGAGGGGAAAGAACCAGCAT
TGAAGGACTGTCTTTTTTGAAAGTCAGTGCTGATGACCTAGNTTTGGATA
TAAGCATCCCTCAAGCATTTTTTCAGCCTTATTAAGCTTTCGACCTAAGC
ATCTCTGAGCCTGTTTTCGGATTTTTATATGCTTATTAAAAAAACATGTA
TATTGAAACCATCTTTTGTTTTGGAGACGAAAATATTTTGAAAGCAAGTT
CACCTTTATTATTACTTTACCAGTGCAACCAATTCTCCCATCTTTAATTT
CAGCATCTGTTACAGAGTTAAACAGCCAAGGAAACATATCAACTAATTCT
ATCGATAAAACGAATTCCGCCACAAGCAGTACGTATCNATGTCATTCTGG
TCGATCAAGTGAATGAAGAAGCCATCTCCAACGATTCAACGAAGAAGAGA
GTAATGAAAAACGATGAAGGAGGAGGAGGAACGGAAAGAGAGAAAGAAGC
CTCGAAGGAAAGAGTGAGCACACTCAAAGAGGAGACACCACCAGCCGCCA
AGAAAGCTTGTTTGAATGAGAGAGGAAGTACCCCTTTCATTTTGATGCAA
GAAATGTTACGTGGTGAAACTGATCTCAAACTACCACCAGGTGATTTTAT
TTCTTCAAATTGCCCAATTAAAAGGTTTTGTACAAATATTTTTCACAAAA
GTTTGCAAGCCTTTTTTTGTACGAAATAGTACGAAATTGATATTAACTCG
CATATGCACCGATAGAGTTAGTTGATTTTGGTTCCGTTTCTTNAAGGATT
TGGTGAAAACTGTTTTCGGCGAGCCTAGATATTCGAAATGTTTCACTTTT
GGCCAGAACTCATTTAGACATGTGGGTGATTTAAAAAAATATGCATAGAT
TTAGCCCAGCTTTAACCCACCAATATCACGGTTGACTTCTGCNTATGCTG
GGAACTCATTTTTAGTGGGACTTTAACCCACTTGCACACTTTGAATCTCG
AATACGTCAATTCGATTGGTTCTTTGTCGTTTTATTTAAATTAGTATTAT
AACATTAACCCATAATTCACAAGGTCCATTAATCAATCTTATTTGTTCTT
TATTTAACAAAGATACGGAGGGAATGCTGTTAACAAAATAAAGTTTGTAT
TGATTTCTAGATCCAAAGCAATGGAGTGTCGAGGAAGTTTCGAAATTCAT
GGAATGGTTGGTCAGTCAGCTTCGTGTAAGCAAACCAACCACGCCGTACC
AAAAATTCCACATTGATGGAAAATTATTGTATAAAATTCGTAAAAGAAGT
CTTCAGCGTTTCTTTACCGATAGTGCGGTTGACATCCTTTGGATACACGT
GNGACCTGACAAAAGTTTTTTGACTGTCTTCTGAAATTTTTAAACGAAGA
AACGATGTAAAAATTACTGCTTTCAGGATAATTTTTCAAGAAACGCGGAA
TTTTTTCTTTGTTTCAAATGCAAAAATGTCTTTTGAATCAGAAAATAGGG
CCAAATTCCAGTTCAAAATCGAATTTTGAATGCAAATTTAGACCTGCAAA
TCCCTTTTTAAACACACACGCACTAGTTATTTTGTATGTTTTCTGGTGAT
AGAATTTCAAAAAGAACCTCAATTTGAGGTGCTCATCAACTTTCCCTTTG
AGGTTTTTTCTACTCTTGGGCAAAAATTGCTTCAGTAAAAACAAAAATAA
CTTTTATTTTTAGGAACAAAGATCTCCACAGATGGTTATTGTAAGTTTCC
TTTGTTCTTTTATTTATATAACACCCTGTTTTGTTCGTCTTTTATCTTTA
GAGTCTTTAAATTGTAATTTAATTTTTGTAAGCTATTTACAGTGATTTAA
CACACTTTAGAAATTGTTACTCATAATTTAGGGGTTGAAGCAAGCTCGTT
GATTTTTATTGGTTGAGCATTAGGTTGACGTTGCTCTTACCCTTTCCCCC
ATTTTTGTGTTTTCTTTTTTTCTTTGATTGATCATATGAAAATCAAGTGA
AAAATTTATGAGAAAGAAGAAAAACCACAACGCTTTCATTCATAACACGT
TTGGAAGTTTTCTTTTTTAAGTAAATGTTTTTAAAGTTTATCAGAGATTT
TTCAACGATTTATCTCCTTTACGCCAAAATAGTCGATTTATGTCCATAGA
TATAAAACCCGAAGGGCTAGATGTCGCACTTTAAGCCATCACAGGCAAAA
AAAGTGAATATCGCAAAAAATATTGCTGCTAACTGTTTTCGAAACCCGCG
AAGCTTCTGATTGGGCAAGCGCTGAAATTCTATTGTAATGTCACGTGACT
TTTGGCACACTTTTCAGCACTCCATCTAGCCCTTCGGGCTTTATAAATCC
ATGTTTATGCCCCTTAAAATCAAGTGGTCAAGAGCTANTTTGTTTCAAAT
GCCAAAATGTCTTTTGAATCAGAAAATAGGGCCAAATTCCAGTTCAAAAT
CGAATTTTGAATGCAAATTTAGACCTGCAAATCCCTTTTTAAACACACAC
GCACTAGTTATTTTGTATGTTTTCTGGTGATAGAATTTCAAAAAGAACCT
CAATTTGAGGTGCTCATCAACTTTCCCTTTGAGGTTTTTTCTACTCTTGG
GCAAAAATTGCTTCAGTAAAAACAAAAATAACTTTTATTTTTAGGAGCAA
AGATCTCCACAGATGGTTATTGTAAGTTTCCTTTGTTCTTTTATTTATAT
AACACCCTGTTTTGTTCGTCTTTTATCTTTAGAGTCTTTAAATTGTAATT
TAATTTTTGTAAGCTATTTACAGTGATTTAACACGCTTTAGAAATTGTTA
CTCATAGTTTAGGGGTTGAAGCAAGCTCGTTGATTTTTATTGGTTGAGCA
TTAGGTTGACGTTGCTCTTACCCTTTCCCCCATTTTTGTGTTTTCTTTTT
TTCTTTGATTGATCATATGAAAATCAAGTGAAAAATTTATGAGAAAGAAG
AAAAACCACAACGCTTTCATTCATAACACGTTTGGAAGTTTTCTTTTTTA
AGTAAATGTTTTTAAAGTTTATCAGAGATTTTTCAACGATTTATCTCCTT
TACGCCAAAATAGTCGATTTATGTCCATAGATATAAAACCCGAAGGGCTA
GATGTCGCACTTTAAGCCATCACAGGCAAAAAAAGTGAATATCGCAAAAA
ATATTGCTGCTAACTGTTTTCGAAACCCGCGAAGCTTCTGATTGGGCAAG
CGCTGAAATTCTATTGTAATGTCACGTGACTTTTGGCACACTTTTCAGCA
CTCCATCTAGCCCTTCGGGCTTTATAAATCCATGTTTATGCCCCTTAAAA
TCAAGTGGTCAAGAGCTATGGCCAAAAGTCTTGGACTTTGTCTAGAATTT
CGACCTGTTATTTTGACGTGTATGCCGGGTGACCCACGAAAAAGTATTAT
GGGTTGATGACAAATGTGCCCGTAATTTTACGACATTAATTTTTCATTGT
GATGATGAAGTGCAAAATTTGGTGTAGGGTATAATTCAAATTCGGTTTAG
TGGTTCAAAATATTTTAAGGTATTAAATTAACGCTAAACAATAGAGAATA
GCTCGTTTTTTAATATTTGTGTAATTTTTATGACGCGATTAATGATCGAA
GCTAATTTATAACCATATAGATGTAACAGAATCATTCAATGAATTAGCCG
TTTTCGTAACTGAGAAACTACAGTTGCGTAATAATATTTATTTTATAGCA
AGTCTTCACTTGTGGCGAGGCCATCAAAGCGCAACCAATACACCTTTTCG
ACCGTAGCCGCCAATTGCTGCGCGGGCATTTTTTTGTCCGCTTTATCCCA
CTAAAACCGTCCCAGTCCTTTTTTTGCACCTATAGACAATAGAAAAATGT
GTCAAAAAAAGGATTGGATCGAGTTTAGTGGGATAATCAAATAATTAAGT
GGCACGCGCCTGACCGCGCGACTACGGTCGAAAAGGTGTATTTGCGACCG
TTATTCATTGATTGATTGTAGAAGTGCTTATATTTACCCATCGAAATTTT
ATAGAGAGTTAACTCGGCTCTGGCCACGAGCTAGTATATAGTGGAAACTT
TACTTTAACTCCAACCTCTATAACTCGAATGTCTCTAACTACTTGTCTTC
TCAGTTAAGAGTGCGTTATAAACCTCACTCCACGCTCCCCGTCCGCGGGT
TCGAAAGAAGTTTTCCATACAACCGAATAATGTTTTGTTATGAGAAACTT
TTTTCAATAAAAACTGCACTCTGTGGAGCACCTACTATGAAACTTTCATC
TATCATTTTTAGCATCACCGGGCAGTGGGCAAATACAACTGTGGCAATTC
TTATTGGAGCTGTTAACAGAGAAAAACATGAAAGACATAATTATGTGGGT
GGGCGAAGAAGGTGCTTTCAAATTGGTTGACCCTGAACGAGTTGCTCAGT
TATGGGGTGAACGCAAAAACAAACCCTCCATGAACTACGAAAAATTGAGT
CGAGCCTTGAGGTATTACTACGATGGCGACTTGATACACAAAGTGTGTGG
TAAGCGCTTCGTTTATCAGTTTGTTTGTGATCTGAAGATGTTGTTGGGGT
ACAGTGCTGCAGAACTTAGTCAATTGGTGAGCGAGAGCAGCGATGATTGA
AACTTATCTATACTTACATTACAGTATAGACACGACGATTGTTGTGAACG
CTTATCATCTTTTAGAGAATAAAGAATATTTCTTAACCCTTTAAGTGCCA
CGGTCATTTTTTTAAGTTTAAAAAAAATCGCTAGTTCGAACTTTAAAGGC
TTATATCTCCGGATCTAGAAGGAGTTAGAAGCTCGTTGGATAGCGTTGGA
TAGNGATAGCTTCATACCAATCCTTGGGATATTTTGCGATATTATCCATG
TATCGTTGGTTAGCTTTCCATTCTTCCTCCTAAATTCATAAAACTTGAAT
TTTTTTTATCCAGAAAATCCAACAATTTCCAAAATCTATTTTTATTTGAG
GCTTACTTTAGGCGTACCAACTTTCGCGATTTTCGCGAATTTTGACCTTT
TTCGCGAAAGTAAATGTCTTTGAAAATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031908XLOC_031908Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050391-exon-scaffold_17-1575043694:95658..96263TCONS_00050391-exon-scaffold_17-1575043694:95658..96263Clytia hemisphaericaexon
TCONS_00050391-exon-scaffold_17-1575043694:93196..93317TCONS_00050391-exon-scaffold_17-1575043694:93196..93317Clytia hemisphaericaexon
TCONS_00050391-exon-scaffold_17-1575043694:92536..92942TCONS_00050391-exon-scaffold_17-1575043694:92536..92942Clytia hemisphaericaexon
TCONS_00050391-exon-scaffold_17-1575043694:91174..91200TCONS_00050391-exon-scaffold_17-1575043694:91174..91200Clytia hemisphaericaexon
TCONS_00050391-exon-scaffold_17-1575043694:87885..88651TCONS_00050391-exon-scaffold_17-1575043694:87885..88651Clytia hemisphaericaexon
TCONS_00050391-exon-scaffold_17-1510915933:95658..96263TCONS_00050391-exon-scaffold_17-1510915933:95658..96263Clytia hemisphaericaexon
TCONS_00050391-exon-scaffold_17-1510915933:93196..93317TCONS_00050391-exon-scaffold_17-1510915933:93196..93317Clytia hemisphaericaexon
TCONS_00050391-exon-scaffold_17-1510915933:92536..92942TCONS_00050391-exon-scaffold_17-1510915933:92536..92942Clytia hemisphaericaexon
TCONS_00050391-exon-scaffold_17-1510915933:91174..91200TCONS_00050391-exon-scaffold_17-1510915933:91174..91200Clytia hemisphaericaexon
TCONS_00050391-exon-scaffold_17-1510915933:87885..88651TCONS_00050391-exon-scaffold_17-1510915933:87885..88651Clytia hemisphaericaexon
TCONS_00050391-exon-scaffold_17-1491911889:95658..96263TCONS_00050391-exon-scaffold_17-1491911889:95658..96263Clytia hemisphaericaexon
TCONS_00050391-exon-scaffold_17-1491911889:93196..93317TCONS_00050391-exon-scaffold_17-1491911889:93196..93317Clytia hemisphaericaexon
TCONS_00050391-exon-scaffold_17-1491911889:92536..92942TCONS_00050391-exon-scaffold_17-1491911889:92536..92942Clytia hemisphaericaexon
TCONS_00050391-exon-scaffold_17-1491911889:91174..91200TCONS_00050391-exon-scaffold_17-1491911889:91174..91200Clytia hemisphaericaexon
TCONS_00050391-exon-scaffold_17-1491911889:87885..88651TCONS_00050391-exon-scaffold_17-1491911889:87885..88651Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:87885..96263 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	1.11786e-09	3.36449	2.40754	0	0.484093	0.0907368	1.09905	0.410221	0	0.00576889	0.887788	0.277945	0	1.07762	1.14546	0.516003	0.256711	0.618491	0.970373	4.4183	4.16906	0.953555	0.639595	0	0.110094	1.61865	4.47133
Blast
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BLAST of TCONS_00050391 vs. Swiss-Prot (Human)
Match: GABPA (GA-binding protein alpha chain OS=Homo sapiens GN=GABPA PE=1 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 8.380e-53
Identity = 103/178 (57.87%), Postives = 124/178 (69.66%), Query Frame = 1 
Query:  985 RKYF----ESKFTFIITL--PVQPILPSLISASVTELNSQGNISTNSIDKTNSATSRTKISTDGYSSPGS-----GQIQLWQFLLELLTEKNMKDIIMWVGEEGAFKLVDPERVAQLWGERKNKPSMNYEKLSRALRYYYDGDLIHKVCGKRFVYQFVCDLKMLLGYSAAELSQLVSE 1485
            RKY     E +   I+T+  PVQ I  S+ SA+ T +        NS  K        +IS +  SSPG+     GQIQLWQFLLELLT+K+ +D I WVG+EG FKL  PE VAQ WG+RKNKP+MNYEKLSRALRYYYDGD+I KV GKRFVY+FVCDLK L+GYSAAEL++LV+E
Sbjct:  248 RKYVLASQEQQMNEIVTIDQPVQIIPASVQSATPTTIKV-----INSSAKAAKVQRAPRISGEDRSSPGNRTGNNGQIQLWQFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYYDGDMICKVQGKRFVYKFVCDLKTLIGYSAAELNRLVTE 420
The following BLAST results are available for this feature:
BLAST of TCONS_00050391 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GABPA8.380e-5357.87GA-binding protein alpha chain OS=Homo sapiens GN=... [more]
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