TCONS_00050381 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050381
Unique NameTCONS_00050381
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1600

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050381 ID=TCONS_00050381|Name=TCONS_00050381|organism=Clytia hemisphaerica|type=transcript|length=1600bp
TCGTATATTTATTTTGTAATATCAGTCTTTCTGATCATACAAAGACATTT
TTGAACtataaaatgagaaaaaaactttcttcaagGGAAACGAAGAAGTT
GATGAGTGAAAAATGAACATCGAGCAATGAAGATTAGAtttttgttttta
catctgaagaaaatcatcaaagaaaCGAAGAGGAGCATGTCGTCTGAACC
GTTATTCACAGAAATCCATTCCCTATGTCAACAACAACCCACCATCAAAT
GTCAAAACAGAAAATTCCTTGCTGGCTCCACATCCAAAGATTTCCCTGAA
ACATTACCCAAATTTGTTCACCATGATTTCAAAGCTATCAAAATTACTCA
TAAACATCGATGCCAAGACATCAAGCGCCTTGGTGTTGCAATGAGACCAG
CTTTAGATTCCATGTTCAAAGCAAAGAAATCTGCTGTTTTGATCAAAGGT
CTACCGATATCTGTGGGCAAGGATTTCCACGATTTTGTGGAAGGTTGTGC
GTACAAAGCAATGACTTATGAATCAGGGAGCGGATTTCGTGCAGCGGTGG
ATGATTTGGTGTACACAGCCAGTGACGAGCCTCCTCCTTTCTCCATAGAA
CCTCACAATGAGATGTCTTACTTATCGAAATTCCCTCAAAAGATTATATT
TTGTTGTTTGAGCACAGCAGACAAAGGAGGCGAATCTCCCATCGTTTTCA
ACAGAGATCTGATCAAAAAAATCAAGCCTGAAGNGACAAAGGAGGCGAAT
CTCCCATTGTTTTCAACAGAGATCTGATCAAAAAAATCAAGCCTGAAGTG
TTGAACAAATTTCGCGCCAAAGGAATCAGATACTCGCGCAATCTGAAACA
TCGAAAGAACACCGACTACATTTCTTGGCAGAGTACTTTCTACACTGAAG
AAGAAAAGGAAGCAGAAAAGAAAATGTCGAAGGAGGGTTTCCAGTGGGAG
TGGAAAGCTAACGGTGACGTCACAATATGGTACCAACAACCTGCGTTTTA
CGAATTAGCAAACAGTGGTGAGGAGGTGTGGTTCAACCAAATGACAGCCA
ATCATTGCAGTTATTACAAAAGTCACCCCATGTTTGCAGACAGAGCAGAA
GATTTACCGGCACACGAATATCCGTATCACTGTTGCTATGGAGACGgtga
agaaattgaaaatgacgtcatggaTCATATCCGATCGGTGGCGTGGAAAA
ATGCAATGTCGTTGACATTGTTGCCAGGAGACGTGTTGATTTTGGATAAT
TTGTTGTGTCAACACAGTAGAATCGGGTATGAGGGTGGTGACCGCAGAAT
TCTCGTCTTTTTGGGAGAACACACCAACCGATAATCAACATTTACGTAAC
AATTTAGAGATTGTACAATTGGAGTTATTTCACACATTGTAGATAGTTTT
AATTAGACTAGCAACGTCTATTCAGCCAGTAAAAATCTCAACTTTCTCAA
ATACAACTTGCGAccggaaaagaaagaaaactaaagaaattgaaaagtta
CCTTCATCTCTCCATCGAAGAATCATATCGATTGCGTAATATCCTCGACA
CTGAAAAGTGAAGAGCAAGAACCATTAGCTATCTAGGTAGCATTAAGagt
Run BLAST on NCBI

protein sequence of TCONS_00050381-protein

>TCONS_00050381-protein ID=TCONS_00050381-protein|Name=TCONS_00050381-protein|organism=Clytia hemisphaerica|type=polypeptide|length=216bp
MKIRFLFLHLKKIIKETKRSMSSEPLFTEIHSLCQQQPTIKCQNRKFLAG
STSKDFPETLPKFVHHDFKAIKITHKHRCQDIKRLGVAMRPALDSMFKAK
KSAVLIKGLPISVGKDFHDFVEGCAYKAMTYESGSGFRAAVDDLVYTASD
EPPPFSIEPHNEMSYLSKFPQKIIFCCLSTADKGGESPIVFNRDLIKKIK
PEXTKEANLPLFSTEI
Run BLAST on NCBI

transcript from alignment at scaffold_17:127848..130127+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050381 ID=TCONS_00050381|Name=TCONS_00050381|organism=Clytia hemisphaerica|type=transcript|length=2280bp|location=Sequence derived from alignment at scaffold_17:127848..130127+ (Clytia hemisphaerica)
TCGTATATTTATTTTGTAATATCAGTCTTTCTGATCATACAAAGACATTT
TTGAACtataaaatgagaaaaaaactttcttcaagGGAAACGAAGAAGTT
GATGAGTGAAAAATGAACATCGAGCAATGAAGATTAGAGTGAGTATACTT
TTTCCACAAAGGCCAAAATCACTAAAATCGCAGGAGTTTTTGCTGACACG
AATTCTGTCGCAAAGAAGTATCATTCTACTGTATGGCTGCAAAAGTTCTT
TTCTACAGGATGAAGATATCTAATTGTAGTATTCGGTTTTAAGAAAATAC
TTCTGCAAGTTTCTACTTCTTtcttaaatgttttgaaatgtaatctaaCA
ACTATCGAGTCCATTAAATAAATTTCTCCCAACCTTTCTATTTacagttt
ttgtttttacatctgaagaaaatcatcaaagaaaCGAAGAGGAGCATGTC
GTCTGAACCGTTATTCACAGAAATCCATTCCCTATGTCAACAACAACCCA
CCATCAAATGTCAAAACAGAAAATTCCTTGCTGGCTCCACATCCAAAGAT
TTCCCTGAAACATTACCCAAATTTGTTCACCATGATTTCAAAGCTATCAA
AATTACTCATAAACATCGATGCCAAGACATCAAGCGCCTTGGTGTTGCAA
TGAGACCAGCTTTAGATTCCATGTTCAAAGCAAAGAAATCTGCTGTTTTG
ATCAAAGGTCTACCGATATCTGTGGGCAAGGATTTCCACGATTTTGTGGA
AGGTTGTGCGTACAAAGCAATGACTTATGAATCAGGGAGCGGATTTCGTG
CAGCGGTGGATGATTTGGTGTACACAGCCAGTGACGAGCCTCCTCCTTTC
TCCATAGAACCTCACAATGAGATGTCTTACTTATCGAAATTCCCTCAAAA
GGTAAGCATATGTATTCCTTAGTTCGCACCGATTCTAGTATGTTATTGAT
GGTGGTGTATATGTTACTATAACAGACCTCTTCGAAACGAAGTTGAAATT
AACATGCGCACATGGGAAATATTTCTTCGAATCTCTAAAATAACTTTTCT
TCTTTCAGATTATATTTTGTTGTTTGAGCACAGCAGACAAAGGAGGCGAA
TCTCCCATCGTTTTCAACAGAGATCTGATCAAAAAAATCAAGCCTGAAGN
GACAAAGGAGGCGAATCTCCCATTGTTTTCAACAGAGATCTGATCAAAAA
AATCAAGCCTGAAGTGTTGAACAAATTTCGCGCCAAAGGAATCAGATACT
CGCGCAATCTGAAACATCGAAAGAACACCGACTACATTTCTTGGCAGAGT
ACTTTCTACACTGAAGAAGAAAAGGTAACTTCCTCCAAACAACATGTAAT
TCACATTTGAGTTAAATACGGTAACTCAATCCGTCACAGCAATTATTGTC
AAAGGGGTCGAAGAAGGATGTTATCAGATATTTCAATCGACAGAAGGGAT
CGCCAAAAAACTTTTAACCCTTCTTTTCATTCAGGAAGCAGAAAAGAAAA
TGTCGAAGGAGGGTTTCCAGTGGGAGTGGAAAGCTAACGGTGACGTCACA
ATATGGTACCAACAACCTGCGTTTTACGAATTAGCAAACAGTGGTGAGGA
GGTGTGGTTCAACCAAATGACAGCCAATCATTGCAGTTATTACAAAAGTC
ACCCCATGGTAAGTTTGATGCATTGCAAGAGCTCGAAAAAACAACGCTTT
GTTTCATGCTTTGACCAAAATGTTACCCAGACAACTcaattttttgtcat
tcttgTCATTAGTTTGCAGACAGAGCAGAAGATTTACCGGCACACGAATA
TCCGTATCACTGTTGCTATGGAGACGgtgaagaaattgaaaatgacgtca
tggaTCATATCCGATCGGTGGCGTGGAAAAATGCAATGTCGTTGACATTG
TTGCCAGGAGACGTGTTGATTTTGGATAATTTGTTGTGTCAACACAGTAG
AATCGGGTATGAGGGTGGTGACCGCAGAATTCTCGTCTTTTTGGGAGAAC
ACACCAACCGATAATCAACATTTACGTAACAATTTAGAGATTGTACAATT
GGAGTTATTTCACACATTGTAGATAGTTTTAATTAGACTAGCAACGTCTA
TTCAGCCAGTAAAAATCTCAACTTTCTCAAATACAACTTGCGAccggaaa
agaaagaaaactaaagaaattgaaaagttaCCTTCATCTCTCCATCGAAG
AATCATATCGATTGCGTAATATCCTCGACACTGAAAAGTGAAGAGCAAGA
ACCATTAGCTATCTAGGTAGCATTAAGagt

Coding sequence (CDS) from alignment at scaffold_17:127848..130127+

>TCONS_00050381 ID=TCONS_00050381|Name=TCONS_00050381|organism=Clytia hemisphaerica|type=CDS|length=1953bp|location=Sequence derived from alignment at scaffold_17:127848..130127+ (Clytia hemisphaerica)
ATGAAGATTAGAtttttgtttttacatctgaagaaaatcatcaaagaaaC
GAAGAGGAGCATGTCGTCTGAACCGTTATTCACAGAAATCCATTCCCTAT
GTCAACAACAACCCACCATCAAATGTCAAAACAGAAAATTCCTTGCTGGC
TCCACATCCAAAGATTTCCCTGAAACATTACCCAAATTTGTTCACCATGA
TTTCAAAGCTATCAAAATTACTCATAAACATCGATGCCAAGACATCAAGC
GCCTTGGTGTTGCAATGAGACCAGCTTTAGATTCCATGTTCAAAGCAAAG
AAATCTGCTGTTTTGATCAAAGGTCTACCGATATCTGTGGGCAAGGATTT
CCACGATTTTGTGGAAGGTTGTGCGTACAAAGCAATGACTTATGAATCAG
GGAGCGGATTTCGTGCAGCGGTGGATGATTTGGTGTACACAGCCAGTGAC
GAGCCTCCTCCTTTCTCCATAGAACCTCACAATGAGATGTCTTACTTATC
GAAATTCCCTCAAAAGATTATATTTTGTTGTTTGAGCACAGCAGACAAAG
GAGGCGAATCTCCCATCGTTTTCAACAGAGATCTGATCAAAAAAATCAAG
CCTGAAGNGACAAAGGAGGCGAATCTCCCATTGTTTTCAACAGAGATCTG
AATGAAGATTAGAtttttgtttttacatctgaagaaaatcatcaaagaaa
CGAAGAGGAGCATGTCGTCTGAACCGTTATTCACAGAAATCCATTCCCTA
TGTCAACAACAACCCACCATCAAATGTCAAAACAGAAAATTCCTTGCTGG
CTCCACATCCAAAGATTTCCCTGAAACATTACCCAAATTTGTTCACCATG
ATTTCAAAGCTATCAAAATTACTCATAAACATCGATGCCAAGACATCAAG
CGCCTTGGTGTTGCAATGAGACCAGCTTTAGATTCCATGTTCAAAGCAAA
GAAATCTGCTGTTTTGATCAAAGGTCTACCGATATCTGTGGGCAAGGATT
TCCACGATTTTGTGGAAGGTTGTGCGTACAAAGCAATGACTTATGAATCA
GGGAGCGGATTTCGTGCAGCGGTGGATGATTTGGTGTACACAGCCAGTGA
CGAGCCTCCTCCTTTCTCCATAGAACCTCACAATGAGATGTCTTACTTAT
CGAAATTCCCTCAAAAGATTATATTTTGTTGTTTGAGCACAGCAGACAAA
GGAGGCGAATCTCCCATCGTTTTCAACAGAGATCTGATCAAAAAAATCAA
GCCTGAAGNGACAAAGGAGGCGAATCTCCCATTGTTTTCAACAGAGATCT
GAATGAAGATTAGAtttttgtttttacatctgaagaaaatcatcaaagaa
aCGAAGAGGAGCATGTCGTCTGAACCGTTATTCACAGAAATCCATTCCCT
ATGTCAACAACAACCCACCATCAAATGTCAAAACAGAAAATTCCTTGCTG
GCTCCACATCCAAAGATTTCCCTGAAACATTACCCAAATTTGTTCACCAT
GATTTCAAAGCTATCAAAATTACTCATAAACATCGATGCCAAGACATCAA
GCGCCTTGGTGTTGCAATGAGACCAGCTTTAGATTCCATGTTCAAAGCAA
AGAAATCTGCTGTTTTGATCAAAGGTCTACCGATATCTGTGGGCAAGGAT
TTCCACGATTTTGTGGAAGGTTGTGCGTACAAAGCAATGACTTATGAATC
AGGGAGCGGATTTCGTGCAGCGGTGGATGATTTGGTGTACACAGCCAGTG
ACGAGCCTCCTCCTTTCTCCATAGAACCTCACAATGAGATGTCTTACTTA
TCGAAATTCCCTCAAAAGATTATATTTTGTTGTTTGAGCACAGCAGACAA
AGGAGGCGAATCTCCCATCGTTTTCAACAGAGATCTGATCAAAAAAATCA
AGCCTGAAGNGACAAAGGAGGCGAATCTCCCATTGTTTTCAACAGAGATC
TGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031903XLOC_031903Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050381-proteinTCONS_00050381-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050381-exon-scaffold_17-1491911889:127848..127985TCONS_00050381-exon-scaffold_17-1491911889:127848..127985Clytia hemisphaericaexon
TCONS_00050381-exon-scaffold_17-1510915933:127848..127985TCONS_00050381-exon-scaffold_17-1510915933:127848..127985Clytia hemisphaericaexon
TCONS_00050381-exon-scaffold_17-1575043694:127848..127985TCONS_00050381-exon-scaffold_17-1575043694:127848..127985Clytia hemisphaericaexon
TCONS_00050381-exon-scaffold_17-1491911889:128245..128748TCONS_00050381-exon-scaffold_17-1491911889:128245..128748Clytia hemisphaericaexon
TCONS_00050381-exon-scaffold_17-1510915933:128245..128748TCONS_00050381-exon-scaffold_17-1510915933:128245..128748Clytia hemisphaericaexon
TCONS_00050381-exon-scaffold_17-1575043694:128245..128748TCONS_00050381-exon-scaffold_17-1575043694:128245..128748Clytia hemisphaericaexon
TCONS_00050381-exon-scaffold_17-1491911889:128906..129171TCONS_00050381-exon-scaffold_17-1491911889:128906..129171Clytia hemisphaericaexon
TCONS_00050381-exon-scaffold_17-1510915933:128906..129171TCONS_00050381-exon-scaffold_17-1510915933:128906..129171Clytia hemisphaericaexon
TCONS_00050381-exon-scaffold_17-1575043694:128906..129171TCONS_00050381-exon-scaffold_17-1575043694:128906..129171Clytia hemisphaericaexon
TCONS_00050381-exon-scaffold_17-1491911889:129332..129505TCONS_00050381-exon-scaffold_17-1491911889:129332..129505Clytia hemisphaericaexon
TCONS_00050381-exon-scaffold_17-1510915933:129332..129505TCONS_00050381-exon-scaffold_17-1510915933:129332..129505Clytia hemisphaericaexon
TCONS_00050381-exon-scaffold_17-1575043694:129332..129505TCONS_00050381-exon-scaffold_17-1575043694:129332..129505Clytia hemisphaericaexon
TCONS_00050381-exon-scaffold_17-1491911889:129610..130127TCONS_00050381-exon-scaffold_17-1491911889:129610..130127Clytia hemisphaericaexon
TCONS_00050381-exon-scaffold_17-1510915933:129610..130127TCONS_00050381-exon-scaffold_17-1510915933:129610..130127Clytia hemisphaericaexon
TCONS_00050381-exon-scaffold_17-1575043694:129610..130127TCONS_00050381-exon-scaffold_17-1575043694:129610..130127Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:127848..130127 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.153031	0.149318	0.519809	0.536805	0.275162	0.0543591	6.5254	8.47279	28.1555	33.4109	11.964	13.7589	2.68011	3.3118	0.188275	0.202048	4.0208	4.06232	3.38907	4.00036	3.84694	4.76737	1.37446	0.930539	1.97163	2.00403	0.594536	0.375021	0.113235	0.374948
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003819TauD/TfdA-like
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0016491 oxidoreductase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050381 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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