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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050380 ID=TCONS_00050380|Name=TCONS_00050380|organism=Clytia hemisphaerica|type=transcript|length=2846bpRun BLAST on NCBI protein sequence of TCONS_00050380-protein >TCONS_00050380-protein ID=TCONS_00050380-protein|Name=TCONS_00050380-protein|organism=Clytia hemisphaerica|type=polypeptide|length=752bp MDVDKNLKNGLNQSSSKDRYGMADSTKPNQTKRLVIKNFKSKPTLPSNYKRun BLAST on NCBI transcript from alignment at scaffold_17:105684..124308+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00050380 ID=TCONS_00050380|Name=TCONS_00050380|organism=Clytia hemisphaerica|type=transcript|length=18625bp|location=Sequence derived from alignment at scaffold_17:105684..124308+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_17:105684..124308+ >TCONS_00050380 ID=TCONS_00050380|Name=TCONS_00050380|organism=Clytia hemisphaerica|type=CDS|length=47439bp|location=Sequence derived from alignment at scaffold_17:105684..124308+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00050380 vs. Swiss-Prot (Human)
Match: CUL4A (Cullin-4A OS=Homo sapiens GN=CUL4A PE=1 SV=3) HSP 1 Score: 973 bits (2514), Expect = 0.000e+0 Identity = 471/722 (65.24%), Postives = 579/722 (80.19%), Query Frame = 1
Query: 172 TKRLVIKNFKSKPTLPSNYKEVTWEKLREAVVAIHNQQSISSSLEELYKAVENLCSHDMSMNLYDRLKNVCENYVKSIIKDFICDGMDNFMYLKKMNELWESHCRQMTMIRSIFLYLDRVYVLQHSTILSLWDVGLHLWRTHILGNNSIQTRTVDSLLFLIEKERNGEAVDGALLKSLLRMLADLQMYQDVFEERFLQATDLLYSAEGQRFMGEVDVPNYLKHVDKRLKEESDRLLHYLDIGTRKPLILCVENQLISKHITNILNKGFESLMDTNSSEHLNVMYALFSRVKDGQDKLCEYFGGYVKVKGLSIVQDVEKDKTMVQELLDFKEKLDNFIEGAFKKNEKFVSAMKDSFEVFINKRQNKPAELIAKFVDVKLKAGNKEASEEELEMRLDKIMILFRFIHGKDVFEAFYKKDLAKRLLLGKSASVDAEKSMLSKLKQECGSAFTSKLEGMFKDMELSKDIMNTFKQHISSQGDAPNIDLNVNILTMGYWPTYTPIEVNLPNEMVRLQEIFKTFYLSKHSGRKLQWQATLGSCGVKAVFEKSNHELHVSLFQTMCLLLFNDADELSYEDIRDATGIEENELKRTLQSLACGKLQSRVLKKKPPGKDINVKDRFFFNESFTLKLYRIKINQVQLKETAEENQLTNEQVFQDRQYQIDAAIVRILKTRKTLSHTLLVTELYNQLKFPVKPSDIKKRIESLIDRDYMERDKENTNTYVYVA 2337
+K+LVIKNF+ +P LP NY + TW KL EAV A+ + SI +LEELY+AVENLCSH +S LY +L+ CE++V++ I F D +D+ ++LKK+N W+ HCRQM MIRSIFL+LDR YVLQ+ST+ S+WD+GL L+RTHI+ + +Q++T+D +L LIE+ER+GEAVD +LL+SLL ML+DLQ+Y+D FE +FL+ T+ LY+AEGQR M E +VP YL HV KRL+EE DR++ YLD T+KPLI CVE QL+ +H+T IL KG + L+D N L MY LFSRV+ GQ L +++ Y+K G +IV + EKDK MVQ+LLDFK+K+D+ IE F+KNE+FV+ MK+SFE FINKR NKPAELIAK VD KL+AGNKEA++EELE LDKIMILFRFIHGKDVFEAFYKKDLAKRLL+GKSASVDAEKSMLSKLK ECG+AFTSKLEGMFKDMELSKDIM FKQH+ +Q D+ IDL VNILTMGYWPTYTP+EV+L EM++LQE+FK FYL KHSGRKLQWQ TLG +KA F++ E VSLFQT+ LL+FN+ D S+E+I+ ATGIE++EL+RTLQSLACGK +RVL K P GK++ D+F FN F KL+RIKINQ+Q+KET EE T E+VFQDRQYQIDAAIVRI+K RKTL H LLV+ELYNQLKFPVKP D+KKRIESLIDRDYMERDK+N N Y YVA
Sbjct: 40 SKKLVIKNFRDRPRLPDNYTQDTWRKLHEAVRAVQSSTSIRYNLEELYQAVENLCSHKVSPMLYKQLRQACEDHVQAQILPFREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNSTLPSIWDMGLELFRTHIISDKMVQSKTIDGILLLIERERSGEAVDRSLLRSLLGMLSDLQVYKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITYLDHSTQKPLIACVEKQLLGEHLTAILQKGLDHLLDENRVPDLAQMYQLFSRVRGGQQALLQHWSEYIKTFGTAIVINPEKDKDMVQDLLDFKDKVDHVIEVCFQKNERFVNLMKESFETFINKRPNKPAELIAKHVDSKLRAGNKEATDEELERTLDKIMILFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQHMQNQSDSGPIDLTVNILTMGYWPTYTPMEVHLTPEMIKLQEVFKAFYLGKHSGRKLQWQTTLGHAVLKAEFKEGKKEFQVSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGK--ARVLIKSPKGKEVEDGDKFIFNGEFKHKLFRIKINQIQMKETVEEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQLKFPVKPGDLKKRIESLIDRDYMERDKDNPNQYHYVA 759 The following BLAST results are available for this feature:
BLAST of TCONS_00050380 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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