TCONS_00050377 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050377
Unique NameTCONS_00050377
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1168

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050377 ID=TCONS_00050377|Name=TCONS_00050377|organism=Clytia hemisphaerica|type=transcript|length=1168bp
CTTGGAAAATCTAATTTCGAAGAAGGGAAAGAGATATTCGTAGAATGCAT
CGTGCTTACCAATCGATAACTCCTGCCAACAATAAACTTTTAAAGCAGAG
ATGGGATATGACAAGATATGATACACATCGGAAAAAGGTTCGTCAGGCAA
GCGCAGTGATCGATAACCATGCCCCCTGTACATATTTGCATCTACActtg
aaacttaaaaaaatgCAGATTGAGGGAGAAAACTTAGCAACTGTGGAAAG
AGACAATCGAATTTTATTGGAGAAAATGTCACATATCATGAGAACCAAAG
GGCGTGTAGATAATCGCAACTACTACGAACACAAAAGTTTGAATAAAACC
AAACGTCAGCGTGAACTTCTTCGAGTAACACACGAAAATCAGGCTATATT
GAAAAGAATAACATCGAAAGAACCACATTTGAACCATTTACATTGGGAGG
AAGAATGGAAAGCTAACCAACGATACATGGATAATATCGCAAAATATCCC
AAGGATTGGTATGAAGCTATCNCTATCCAACGCTATccaacgagcttcta
actccttctagatccggagatataagcctttaaagttcgaactagcgatt
ttttttaaacttaaaaaaatgaccgtggcacttaaagggttaagaaatat
tctttatTCTCTAAAAGATGATAAGCGTTCACAACAATCGTCGTGTCTAT
ACTGTAATGTAAGTATAGATAAGTTTCAATCATCGCTGCTCTCGCTCACC
AATTGACTAAGTTCTGCAGCACTGTACCCCAACAACATCTTCAGATCACA
AACAAACTGATAAACGAAGCGCTTACCACACACTTTGTGTATCAAGTCGC
CATCGTAGTAATACCTCAAGGCTCGACTCAATTTTTCGTAGTTCATGGAG
GGTTTGTTTTTGCGTTCACCCCATAACTGAGCAACTCGTTCAGGGTCAAC
CAATTTGAAAGCACCTTCTTCGCCCACCCACATAATTATGTCTTTCATGT
TTTTCTCTGTTAACAGCTCCAATAAGAATTGCCACAGTTGTATTTGCCCA
CTGCCCGGTGATGCTAAAAATGATAGATGAAAGTTTCATAGTAGGTGCTC
CACAGAGTgcagtttttattgaaaaaagtttctcatAACAAAACATTATT
CGGTTGTATGGAAAACTT
Run BLAST on NCBI

transcript from alignment at scaffold_17:82316..88756+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050377 ID=TCONS_00050377|Name=TCONS_00050377|organism=Clytia hemisphaerica|type=transcript|length=6441bp|location=Sequence derived from alignment at scaffold_17:82316..88756+ (Clytia hemisphaerica)
CTTGGAAAATCTAATTTCGAAGAAGGGAAAGAGATATTCGTATGatatga
ttttattttcaaatgtttctaaTCCTTTCGTGGAGTCAGGGTGTTTCAga
attaataaaaaaagaacaattacattattttagttttcttttcaaaatcg
atttttctttgttttggaaAGTAATTTCTAAAGTCACAAAGTTGTGTTGT
TAGCACTCATTGGACTGACGGGTGAAGATAATATGAATTGAGCTGTCTAA
GGCTAAGCCAATTCACTAGTCACGTCTACGAAAATTCAATGTAGAGATAA
ATTATCGCAAAATATAGTTGGTTAAGATTATATATTGTTTTTCGAGTCAC
TGTGTAATATTTTTCCTGccaatttttgaagtcaaaaactaattttgtCC
TACAAAGGGTCTATTTAGAACACACTTTTACTAACCTCTGCATAGGTTAT
CCATTATTCCAATGCTGAAGTTCTTAGTAGAGGCATTTAAACtcataaaa
actttgattaAAGATTTGTTTATGAATCCCCAAATCCCCAGCCCCCACCA
TTGAAAACCTTGGTTTGGCAAAAAAACCTGATCTCAAGACAATGAGCCCT
TCACAATTGTTTAAACATCCTAAGACCGTGAATATAAAGAAATAGCCTGA
AGCCGCCCGGATCCACAAAGGCCACACACAACGATCACAAAATCACTTCT
ACACTTGCAGATTGAGGCGTTCACCTCGTGTTCTTACAAGGAATACAGCT
GCGACTGCTTTTAGGTgcttaatatttgtttttaagtataGGCTACACAA
AGACATTTTTGCCACTCGCTTATTTAATATTTCGTTTCTGTGCGCGAAGT
ggattttgtttataaaaaaagagcCGATTTTTTTGACTCAAAATGAAACA
TCTTTTCTCAAATATATAGAGTCGGTTGGAGGACAAGAACCAAACCATCA
ATTAGGCTTGgcctaaagtctgtctcaaaataatttgcagctggagaaaa
aaatagctgtaacttttgatagaattcgaatgaattgcgattttgtgctc
ctTAAAAAGATaatcgtgagtggaatattatgaagtaaaaaattttagaa
aaaaaaggaaaatgaaaatgaaaaatgaagaagaaaaaaatcgatttctt
gtagaaatgtggtataattaccattttcacaggagtgattcatcaatctt
agatcattatcactctcaaaaaatttttcaaaaatattcattcaatcaaa
agatatcaaacaaagtttattgctggttgactctataaacactatactat
aaagtagtaaaaaacgacaaaaaaaacagccttttgtcgatcaaccagca
ataaactttgtttgatatcttttgattgaatgaatatttaaattgaaaaa
tcttttcacactgatgatgatctaagattgaagagtcacaccaggacaaa
gtttttgcaagcgaggcgagggaagatatgacagtcagggaaatccctca
attgcggtatactgcaattgcggtagttttcattcgtgcctacaaaggct
tataacagctacatatagtgctggtcaacaaacatcgactgtaaaaaatc
gtacgagaagatagcttttctttattaaaagaatctgatctacggaaaaa
atattttgtctgtgcgttCAAAAGATANNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGA
TATGaccaattatgtacaaaaattgcctgttttctccttgaatcttgaat
tctgtttcttgaatatactgcaattgcggtatatgaaaaattcaaaagtg
aagTTTATCCCGCAATTGCAGTAAGaaattactaccgcaattgagggatt
tccctgactgtatgaggatttaatatcatcgaactaatcgaactttttac
tgaccgaactgatcgaactgctattgcttaaaaaattgtgagtgttcgat
ataggttcgattaatttttttaattgaattttaatCGTTTGACTGGGTTC
GCTTAGTTTGaattgtttgattggttcgacaagttcgattgatcggatCT
CTGGCATGTtatatgacagaaagtatgattgataaacttggtggagttat
caaaacaaatttgttgtcaaagagatttaaagtaagtgaaaatacaggtc
AGATATACAACAAGTCCCATGGTCAAGTTATTCAAAGCCTTTCAAAGCCT
GTCGCACGCGTTCGTTCGCCAAAACGACAATTGCTATTGGGTTGCAAAAT
CTCACAGACTCTAGACTAGACACAAAATAGCAAAGCAGAAGATTATGAAT
ACAATAAGAACAGATCATACTCACTTATACTTTAAGGTGAATAGTAGAAA
TGTGTCAATCACGAGGTTCAACTTATATACCTGCTtgaccttttttgaaa
tttgagtaGGCTCCATCCAGCtaaactttcactttcgttttcggaagTTA
CTAGACTGCGCTTCTTTTGTAGCGCCTGCTCCACGATAGAGGCTAAATCT
AACGTCACCATAGTAACGTTTGATAATGGCagagaacaaaaacaaaaaaa
gtcgGCCATTTGTTCTTCTCAAATTACAGCGCGAGGACATATCTCGAGTG
CGCAGGGGCCTTTTTGggtttttctaacttttatgggattttaatttctt
ttgtaaaagtaGGTAGAATGCATCGTGCTTACCAATCGATAACTCCTGCC
AACAATAAACTTTTAAAGCAGAGATGGGATATGACAAGATATGATACACA
TCGGAAAAAGGTAAGACGTTGGCATgtgttttcttttcaacttttgatat
ttctttAAGCATCACCAGTGCTTAAAAATGTAAAACGCAATAGGTTTTCT
GCTGAAGTTTATTAATCGTTATTTTTGTTGCTCCGTAACGCTTCAGAGGG
CTagaattttcgcgaaaaagacTAAAATTTTCGAATACCTTATTAACTTC
AGCGAATAAAATAATGGTTAATTGCTTTCTTCATTTTCAGGTTCGTCAGG
CAAGCGCAGTGATCGATAACCATGCCCCCTGTACATATTTGCATCTACAc
ttgaaacttaaaaaaatgCAGGTAACTTACGTTTAAACCTTTATCATAAT
TTAGATGAGCAGTACTCCGTTTGGATTATTACAGTATGTTTTATAGACTG
GACTTTTTTGGAAATCATCTTTATACTCTTATGGAGGGGCCTTAGTATAG
TTATTGATACTGTGTATATGCAACAAATTGCCGTTCGAATTCTAGATTGA
GGGAGAAAACTTAGCAACTGTGGAAAGAGACAATCGAATTTTATTGGAGA
AAATGTCACATATCATGAGAACCAAAGGGCGTGTAGATAATCGCAACTAC
TACGAACACAAAAGTTTGAATAAAACCAAACGTCAGCGTGAACTTCTTCG
AGTAACACACGAAAATCAGGTAGCGTTAGAAGCCTTTTATCTTCAAAAGT
CTAACTAgctgttgtttttctctttttgattAACAGGATTAACTGATTTT
TTTGAGTAAAATTATTATCACTAATGTTACAATTTATACGAAGGgccatt
ttcttttgaaaatgaacagaatttttttaaaaacgttttgaaTGAAACAT
TTTCTCCTTTTCTGTTACAGGCTATATTGAAAAGAATAACATCGAAAGAA
CCACATTTGAACCATTTACATTGGGTAAGTAACTGTTATCGTCTAAAAAG
TAATGAGGATCAACTAACGCGTCTCGATTATTTCGAAATGCATGTAAGAG
ATATGTGATGATTGGATAAAATTTTAAATGGATTTCTCACGTCTCGCGTT
TCATTTATTTTGGTTTATGTGAAATAGATGCTCACAAACAGAACAAGATT
TGAGCGTCTGTTACATTCatcaattcaaaaataattaattttctttctcC
CGATGGAACTGATCCAATTAGATTAGATTGTCGAGGACATGCTTATTTAA
ATAGGCTGCCCTTAAATTGCCCtgtgattgaaaaaaaactcaCAATGAAA
TTACAGCTGATCTCCGTAATTTAAAATGATTCCTGATTTTAACTCTGTTG
GGGCAGAGACAATGAACGGAAATATTTTCGCGATTCGCGGAAATTTAGTT
ACCGTGAAGTTGTATATACACTCAAGGTACCTTTAAAAGTTTTCTCATGA
AAAAGGCTGCTACTTTAGGCgtggtcgaaaaatcgcgaatttgaggaaaa
aatgtttttcgcgagcataaactttcgcgaatcgttggataaaaataaga
atttgtATGAAAATTTCCTTAAAAGTGAATATTATTCGATAAGTCCGATA
AAAACGGTTGCTCCTCAATTTCAAAAAGGCATTAAATATGCCGAAAATTT
AATATTAATTACGATATTTATTATTGATTTCCaactttttgagaattttt
cacGATAAACTTTCGTGGAttgccctgttaagaattttcaaagacattta
ctttcgcgaaaaaggtcaaaattcgcgaaaatcgcgaaagttggtacgcc
taaagtaagcctcaaataaaaatagattttggaAATTGTTGGATTTTctg
gataaaaaaaattcaagttttaTGAATTTAGGAGGAAGAATGGAAAGCTA
ACCAACGATACATGGATAATATCGCAAAATATCCCAAGGATTGGTATGAA
GCTATCGTTCGAAAGACCAAACCCAAGAAGAAGAGCACCTCAATGCAAGA
CAAAGATGATAAATCAGATGAAGAGAATGACAACAATGAACATCTACCCT
CTATCAACAATTAAAGCCACTTTTTTCTTAACAAATGaacaattcttttt
tctaatattttgataaattttgttatctttttgtttttaatgaagtaatt
ttatattaatattttatttaacaaaataaatagATTTAGTTATATGTAAA
TTGTTTTGACTATACAATAAATGAAAATGGTTTGactaaaaatctataaa
aatttAATATAAAATTGAGTATAAAATGGTATGAAAATaagtatataaaa
ataaagatgttgaaatcaaccctttgagtgccaatgtcgtatatatcaga
catgggctatgtaggagggcgaagcccaaAACATTATTCGGTTGTATGGA
AAACTTCTTTCGAACCCGCGGACGGGGAGcgtggagtaaggtttataacg
CACTCTTAACTGAGAAGACAAGTAGttagagacattcgagttatagaggt
tggAGTTAAAGTAAAGTTTCCACTATATATTAGCTCGTGGCCAGAGCCGA
GTTAACTCTCTATAAAATTTCGATGGGTAAATATAAGCACTTCTACAATC
AATCAATGAATAACGGTCGCAANTCGATAAGTCCGATAAAAACGGTTGCT
CCTCAATTTCAAAAAGGCATTAAATATGCCGAAAATTTAATATTAATTAC
GATATTTATTATTGATTTCCaactttttgagaatttttcacGATAAACTT
TCGTGGAttgccctgttaagaattttcaaagacatttactttcgcgaaaa
aggtcaaaattcgcgaaaatcgcgaaagttggtacgcctaaagtaagcct
caaataaaaatagattttggaAATTGTTGGATTTTctggataaaaaaaat
tcaagttttaTGAATTTAGGAGGAAGAATGGAAAGCTAACCAACGATACA
TGGATAATATCGCAAAATATCCCAAGGATTGGTATGAAGCTATCNCTATC
CAACGCTATccaacgagcttctaactccttctagatccggagatataagc
ctttaaagttcgaactagcgattttttttaaacttaaaaaaatgaccgtg
gcacttaaagggttaagaaatattctttatTCTCTAAAAGATGATAAGCG
TTCACAACAATCGTCGTGTCTATACTGTAATGTAAGTATAGATAAGTTTC
AATCATCGCTGCTCTCGCTCACCAATTGACTAAGTTCTGCAGCACTGTAC
CCCAACAACATCTTCAGATCACAAACAAACTGATAAACGAAGCGCTTACC
ACACACTTTGTGTATCAAGTCGCCATCGTAGTAATACCTCAAGGCTCGAC
TCAATTTTTCGTAGTTCATGGAGGGTTTGTTTTTGCGTTCACCCCATAAC
TGAGCAACTCGTTCAGGGTCAACCAATTTGAAAGCACCTTCTTCGCCCAC
CCACATAATTATGTCTTTCATGTTTTTCTCTGTTAACAGCTCCAATAAGA
ATTGCCACAGTTGTATTTGCCCACTGCCCGGTGATGCTAAAAATGATAGA
TGAAAGTTTCATAGTAGGTGCTCCACAGAGTgcagtttttattgaaaaaa
gtttctcatAACAAAACATTATTCGGTTGTATGGAAAACTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031901XLOC_031901Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050377-exon-scaffold_17-1491911889:82316..82354TCONS_00050377-exon-scaffold_17-1491911889:82316..82354Clytia hemisphaericaexon
TCONS_00050377-exon-scaffold_17-1510915933:82316..82354TCONS_00050377-exon-scaffold_17-1510915933:82316..82354Clytia hemisphaericaexon
TCONS_00050377-exon-scaffold_17-1575043694:82316..82354TCONS_00050377-exon-scaffold_17-1575043694:82316..82354Clytia hemisphaericaexon
TCONS_00050377-exon-scaffold_17-1491911889:85078..85175TCONS_00050377-exon-scaffold_17-1491911889:85078..85175Clytia hemisphaericaexon
TCONS_00050377-exon-scaffold_17-1510915933:85078..85175TCONS_00050377-exon-scaffold_17-1510915933:85078..85175Clytia hemisphaericaexon
TCONS_00050377-exon-scaffold_17-1575043694:85078..85175TCONS_00050377-exon-scaffold_17-1575043694:85078..85175Clytia hemisphaericaexon
TCONS_00050377-exon-scaffold_17-1491911889:85406..85486TCONS_00050377-exon-scaffold_17-1491911889:85406..85486Clytia hemisphaericaexon
TCONS_00050377-exon-scaffold_17-1510915933:85406..85486TCONS_00050377-exon-scaffold_17-1510915933:85406..85486Clytia hemisphaericaexon
TCONS_00050377-exon-scaffold_17-1575043694:85406..85486TCONS_00050377-exon-scaffold_17-1575043694:85406..85486Clytia hemisphaericaexon
TCONS_00050377-exon-scaffold_17-1491911889:85661..85834TCONS_00050377-exon-scaffold_17-1491911889:85661..85834Clytia hemisphaericaexon
TCONS_00050377-exon-scaffold_17-1510915933:85661..85834TCONS_00050377-exon-scaffold_17-1510915933:85661..85834Clytia hemisphaericaexon
TCONS_00050377-exon-scaffold_17-1575043694:85661..85834TCONS_00050377-exon-scaffold_17-1575043694:85661..85834Clytia hemisphaericaexon
TCONS_00050377-exon-scaffold_17-1491911889:86036..86089TCONS_00050377-exon-scaffold_17-1491911889:86036..86089Clytia hemisphaericaexon
TCONS_00050377-exon-scaffold_17-1510915933:86036..86089TCONS_00050377-exon-scaffold_17-1510915933:86036..86089Clytia hemisphaericaexon
TCONS_00050377-exon-scaffold_17-1575043694:86036..86089TCONS_00050377-exon-scaffold_17-1575043694:86036..86089Clytia hemisphaericaexon
TCONS_00050377-exon-scaffold_17-1491911889:88035..88756TCONS_00050377-exon-scaffold_17-1491911889:88035..88756Clytia hemisphaericaexon
TCONS_00050377-exon-scaffold_17-1510915933:88035..88756TCONS_00050377-exon-scaffold_17-1510915933:88035..88756Clytia hemisphaericaexon
TCONS_00050377-exon-scaffold_17-1575043694:88035..88756TCONS_00050377-exon-scaffold_17-1575043694:88035..88756Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:82316..88756 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.597245	1.46173	0	0.813326	23.9414	24.3019	9.11097	7.68781	21.9764	26.6271	17.771	16.3041	1.89332	1.1037	0.000741243	0	2.9795	3.84714	0	2.82069	5.12685	1.71935	11.3659	3.2785	6.46873	3.89403	11.8	10.332	3.24534	4.88678
Blast
[Close]
BLAST of TCONS_00050377 vs. Swiss-Prot (Human)
Match: GABPA (GA-binding protein alpha chain OS=Homo sapiens GN=GABPA PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.477e-49
Identity = 83/113 (73.45%), Postives = 97/113 (85.84%), Query Frame = -3 
Query:  741 ASPGS-----GQIQLWQFLLELLTEKNMKDIIMWVGEEGAFKLVDPERVAQLWGERKNKPSMNYEKLSRALRYYYDGDLIHKVCGKRFVYQFVCDLKMLLGYSAAELSQLVSE 1064
            +SPG+     GQIQLWQFLLELLT+K+ +D I WVG+EG FKL  PE VAQ WG+RKNKP+MNYEKLSRALRYYYDGD+I KV GKRFVY+FVCDLK L+GYSAAEL++LV+E
Sbjct:  308 SSPGNRTGNNGQIQLWQFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYYDGDMICKVQGKRFVYKFVCDLKTLIGYSAAELNRLVTE 420
The following BLAST results are available for this feature:
BLAST of TCONS_00050377 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GABPA2.477e-4973.45GA-binding protein alpha chain OS=Homo sapiens GN=... [more]
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