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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050375 ID=TCONS_00050375|Name=TCONS_00050375|organism=Clytia hemisphaerica|type=transcript|length=2040bp
agaaaattcaccAGACAGGTGAGTTTAAGTAATtataatttcatattttt
ctctcaaaaagtAAAACAACTCAGAGTCAAAATGTAAAATGctaaatata
aaataataagaaacaaatttcataaagattaTGGAGCTAAGCCTTTTTTG
CTGTTAGTTGCAGTATGCAATAATTTTGAACTCCAGACTTTGCAATAAGC
AAGTTTATGAAAAACTGTTCCGAGCAAGTATTGGTCATTGAAGAAAACAG
CAGAACTCACGACATGAACAAAATCTTTCCCGTCGTCATGAAGGATTTCT
TTCACTTTGACATTTCTCCAGTCATAATCTCCAGGTATTTCAACCTTAAC
TGCTGAAGCTGAGACAAAGTCCGTTTGATTTTTAGTAAGCTGTGCAAATC
CAAACATATCTTTCCCTATTCCAACATACAAATGACCTTCTCTGTCGATG
TGAATGTTATCGGGGAAATACCCTACCTCAATCTGTTTAACACGTTTCAA
CTGGCCAATATTGTAACGCTCGAACACAGATATACTTGAAGTGGATGTTG
ATGCagaataaagaaattttttatcaGGAGAAAGTGCTATTCCGTTGAAT
AAGGAACCGTGAGCAGCAATAGCAGTGAAGccttttttgtaaaatacaAT
GTTTGCCGTATTCATACCGAAAGCAAGCTCAAAGAAAGTTAAGAAATGGT
ATTTGGATCGGGAACAGAACTTGATGAAGTTGGTGGTATAAAATTCATCT
TCATCAATAATCGTTACGTCATTAAGACAGTTAAACAAATCATTTCGTAT
GGTTGATACATGGTAAACATCTGTAGGGTGTTCAGATGAATATTGGAATA
CTTCAATGGCATCAAAGTCATCCAGGTGATTGACAACATACAATTTGACC
ACTCCATTCACTTCAAACACATCCATGCCATGAGGATCGAAATTCTCCAA
AAACTCTTTAGAAACATTCTTCATTTGCAAACGCTTCGCACCTTGATCAG
GCTTGTTGAAGTCAAACAAATACAGATTTCCTCTCAAGAAATCTTTGTTG
CAATTCGTAGCATCAGCGAACCCATTGGTGATGAATGCTAAACCATTGCT
AGTCACACTGATCTTTTCTGAGCCACATTGTAAATCGGGCAACACTTTAC
AATCTCCTGGTCGGTGATTGATGAATCTCACATTAACACCTTTACCGCAA
AGCCAAAGATGAAACTGCTTTCCAAAAACAATGTACATGATTCCGAATAC
AAGATCTTTTTTAGTTAATGCCATTTCTATAATCTGCCAGAATCTGCttg
taataaaatataatcATTTGTTACAAGCGGGTTTTCAAAAGGTGTATTGT
ACACCCATTTAGTACTTTCTTATACAGTGTAGTGATGTCAGGGGAATTTC
TTTTGTGATGGAACACCAGAGGAAATCCCACAAAGAAGCCTATTCATGCA
CCCCAATAAAAAGATTGACATTGGTAAACTACAAATTTAGGCCCCATCAG
TCCTTAATGAGATAACcagctatttttcattttcaaacatAGTCATGCAG
CTGCTGTCACGGGAAAATTGGGTAGGGTGCTAACAATAAAAAACCTACGT
TAATGTCAATCGAAACGTCTCTGCTAACATGATTAGGAAAAAGATCAGAA
ACCTGATagctgaaaaacttttttatagaAGAGCATGAATCTGGTAATGT
GGCCCACATTTCGATTTATTACTTTTCCTACTTTGAGGCTTTGGTGAAAT
CTCTAAATAGGTATATAGTCAtatcaaatcttattttttctggtcaattt
tgaaatggGCAAGCTTAAACAGTAATTTTTTCTGATATAACAGGTACTCA
AATTTTTCTATAGGGTAATAATTCATAATATAATAATTCATCAACAACAT
GCTTTTTCAGCTTGGTTCTCACAGCCAGaggatatgaaaaatgaaaaaca
cagtaagaaccggaaaaaaaagtttttttggcatataaaatcaaaaatgt
tgcagacataactttttccgttcacaaagttatgtccgca Run BLAST on NCBI transcript from alignment at scaffold_17:74436..76590+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050375 ID=TCONS_00050375|Name=TCONS_00050375|organism=Clytia hemisphaerica|type=transcript|length=2155bp|location=Sequence derived from alignment at scaffold_17:74436..76590+ (Clytia hemisphaerica)
agaaaattcaccAGACAGGTGAGTTTAAGTAATtataatttcatattttt
ctctcaaaaagtAAAACAACTCAGAGTCAAAATGTAAAATGctaaatata
aaataataagaaacaaatttcataaagattaTGGAGCTAAGCCTTTTTTG
CTGTTAGTTGCAGTATGCAATAATTTTGAACTCCAGACTTTGCAATAAGC
AAGTTTATGAAAAACTGTTCCGAGCAAGTATTGGTCATTGAAGAAAACAG
CAGAACTCACGACATGAACAAAATCTTTCCCGTCGTCATGAAGGATTTCT
TTCACTTTGACATTTCTCCAGTCATAATCTCCAGGTATTTCAACCTTAAC
TGCTGAAGCTGAGACAAAGTCCGTTTGATTTTTAGTAAGCTGTGCAAATC
CAAACATATCTTTCCCTATTCCAACATACAAATGACCTTCTCTGTCGATG
TGAATGTTATCGGGGAAATACCCTACCTCAATCTGTTTAACACGTTTCAA
CTGGCCAATATTGTAACGCTCGAACACAGATATACTTGAAGTGGATGTTG
ATGCagaataaagaaattttttatcaGGAGAAAGTGCTATTCCGTTGAAT
AAGGAACCGTGAGCAGCAATAGCAGTGAAGccttttttgtaaaatacaAT
GTTTGCCGTATTCATACCGAAAGCAAGCTCAAAGAAAGTTAAGAAATGGT
ATTTGGATCGGGAACAGAACTTGATGAAGTTGGTGGTATAAAATTCATCT
TCATCAATAATCGTTACGTCATTAAGACAGTTAAACAAATCATTTCGTAT
GGTTGATACATGGTAAACATCTGTAGGGTGTTCAGATGAATATTGGAATA
CTTCAATGGCATCAAAGTCATCCAGGTGATTGACAACATACAATTTGACC
ACTCCATTCACTTCAAACACATCCATGCCATGAGGATCGAAATTCTCCAA
AAACTCTTTAGAAACATTCTTCATTTGCAAACGCTTCGCACCTTGATCAG
GCTTGTTGAAGTCAAACAAGTACAGGTTTCCTCTCAAGAAATCTTTGTTA
CAATTCGTAGAGGATGGACCGTTTGTCATAAATGCTAAACCATTGCTAGT
CACACTNATGATGAGGCTTGTTGAAGTCAAACAAATACAGATTTCCTCTC
AAGAAATCTTTGTTGCAATTCGTAGCATCAGCGAACCCATTGGTGATGAA
TGCTAAACCATTGCTAGTCACACTGATCTTTTCTGAGCCACATTGTAAAT
CGGGCAACACTTTACAATCTCCTGGTCGGTGATTGATGAATCTCACATTA
ACACCTTTACCGCAAAGCCAAAGATGAAACTGCTTTCCAAAAACAATGTA
CATGATTCCGAATACAAGATCTTTTTTAGTTAATGCCATTTCTATAATCT
GCCAGAATCTGCttgtaataaaatataatcATTTGTTACAAGCGGGTTTT
CAAAAGGTGTATTGTACACCCATTTAGTACTTTCTTATACAGTGTAGTGA
TGTCAGGGGAATTTCTTTTGTGATGGAACACCAGAGGAAATCCCACAAAG
AAGCCTATTCATGCACCCCAATAAAAAGATTGACATTGGTAAACTACAAA
TTTAGGCCCCATCAGTCCTTAATGAGATAACcagctatttttcattttca
aacatAGTCATGCAGCTGCTGTCACGGGAAAATTGGGTAGGGTGCTAACA
ATAAAAAACCTACGTTAATGTCAATCGAAACGTCTCTGCTAACATGATTA
GGAAAAAGATCAGAAACCTGATagctgaaaaacttttttatagaAGAGCA
TGAATCTGGTAATGTGGCCCACATTTCGATTTATTACTTTTCCTACTTTG
AGGCTTTGGTGAAATCTCTAAATAGGTATATAGTCAtatcaaatcttatt
ttttctggtcaattttgaaatggGCAAGCTTAAACAGTAATTTTTTCTGA
TATAACAGGTACTCAAATTTTTCTATAGGGTAATAATTCATAATATAATA
ATTCATCAACAACATGCTTTTTCAGCTTGGTTCTCACAGCCAGaggatat
gaaaaatgaaaaacacagtaagaaccggaaaaaaaagtttttttggcata
taaaatcaaaaatgttgcagacataactttttccgttcacaaagttatgt
ccgca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050375-exon-scaffold_17-1491911889:74436..75435 | TCONS_00050375-exon-scaffold_17-1491911889:74436..75435 | Clytia hemisphaerica | exon |
| TCONS_00050375-exon-scaffold_17-1510915933:74436..75435 | TCONS_00050375-exon-scaffold_17-1510915933:74436..75435 | Clytia hemisphaerica | exon |
| TCONS_00050375-exon-scaffold_17-1575043694:74436..75435 | TCONS_00050375-exon-scaffold_17-1575043694:74436..75435 | Clytia hemisphaerica | exon |
| TCONS_00050375-exon-scaffold_17-1491911889:75551..76590 | TCONS_00050375-exon-scaffold_17-1491911889:75551..76590 | Clytia hemisphaerica | exon |
| TCONS_00050375-exon-scaffold_17-1510915933:75551..76590 | TCONS_00050375-exon-scaffold_17-1510915933:75551..76590 | Clytia hemisphaerica | exon |
| TCONS_00050375-exon-scaffold_17-1575043694:75551..76590 | TCONS_00050375-exon-scaffold_17-1575043694:75551..76590 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_17 | supercontig | scaffold_17:74436..76590 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002640 | Arylesterase |
| IPR011042 | 6-blade_b-propeller_TolB-like |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004064 | arylesterase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0004064 |
arylesterase activity |
Blast
BLAST of TCONS_00050375 vs. Swiss-Prot (Human)
Match: PON3 (Serum paraoxonase/lactonase 3 OS=Homo sapiens GN=PON3 PE=1 SV=3) HSP 1 Score: 126.331 bits (316), Expect = 2.918e-31 Identity = 91/332 (27.41%), Postives = 171/332 (51.51%), Query Frame = -2
Query: 186 RPGDCKVLPDLQCGSEKISVTSNGLAFITNG--FADATNCNKDFLRGNLYLFDFNKPDQGAKRLQMKN-VSKEFLENFDPHGMDVF-EVNGVVKLYVVNHLDDFDAIEVFQYSSEHPTDVYHVSTIRNDLFNCLNDVTIIDEDEFYTTNFIKFCSRSKYHFLTFFELAFGMNTANIVFYKKGFTAIAAHG-SLFNGIALSPDKKFLYXXXXXXXXXSVFERYNIGQLKRVKQIEVGYFPDNIHIDRE-GHLYVGIGKDMFGFAQLTKNQTDFVSASAVKVEIPGDYDWRNVKVKEILHDDGKDFVHVVSSAVFFNDQYLLGTVFHKLAYCKV 1163
P +C ++ +L+ GSE I + +GLAFI++G + N D G ++L D N+ + A+ L++ KE F+PHG+ +F + + V LYVVNH +E+F++ + + VY + TI+++L +ND+ ++ ++FY T F + L+FFE+ + ++FY + A G NGI +S D+K++Y A + +I + E+++ L ++K I++G DN+ +D G + G + L N D + ++++ + +V + ++G + S A ++ + L+GTVFHK YC++
Sbjct: 38 EPENCHLIEELESGSEDIDILPSGLAFISSGLKYPGMPNFAPDE-PGKIFLMDLNEQNPRAQALEISGGFDKEL---FNPHGISIFIDKDNTVYLYVVNHPHMKSTVEIFKFEEQQRSLVY-LKTIKHELLKSVNDIVVLGPEQFYATRDHYFTNS----LLSFFEMILDLRWTYVLFYSPREVKVVAKGFCSANGITVSADQKYVYVADVAAKNIHIMEKHDNWDLTQLKVIQLGTLVDNLTVDPATGDILAGCHPNPMKL--LNYNPEDPPGSEVLRIQ---NVLSEKPRVSTVYANNGS-VLQGTSVASVYHGKILIGTVFHKTLYCEL 354
The following BLAST results are available for this feature:
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