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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050373 ID=TCONS_00050373|Name=TCONS_00050373|organism=Clytia hemisphaerica|type=transcript|length=2239bp
cctagggtgaatttcacagaatttgataagaatacagtcattttgtattt
tgttaacagaaaaaattgcttaggaagaaatgtaattttaactcaaatgt
tcactcaaaagtccaaaactctcatgtttgtaaaaaaagtcaagtctaaa
aaagtaagaatacgttaagaatattttacccttaattttggcactttctt
aagaatacttgaccctcagccAAAGCatactattcttataaaaaaaagcg
tgtattgtgATATTCAATGTCAAGAGAAAACTGGTCTGAAAGTCGTACTG
ACGAGGGCTTTTTTATTATAAATggcgaaaaagaaaatttgtaaaagcGT
TTCATTCCCGTTCAGTATTCATTTGgcttaaaagtaaaagaatttAGAAT
ACTACTCAGACAGAATTTTATATCGAAGTTAAATCGAAGCGTCAAAATAT
TGTGAATAGCGTAAAGAAGAAACGAAATAACGAAAACGTTTTTAAGATGC
TAAACACATTATGACCATCATTACAATGCGGTATCGAGATTCAAGTCATG
AAAACATTAGTTCACTCTGACTACCAAATACATTGTAGCAACTAATAACA
TGTTTCTTTAATTAGTCCATACGTAAGGTAAGAACCCATTATCAGGGTCG
TTCCACATTAGACATTGTTTTTGATGATAATCATCTTCCAAACGGACCAC
ATCTCCATCACCGTTAAAAACGATCGTTTGACCAGCCATCGTTCCTTCCA
CCACACCTTCCACCATGAACTGTTTGAACACCCTCCGAATGGTTAACATG
AAATTCCGTTCCGATTCTGTCATggtttgtagatttttcttccACCACTT
AAAACCAAAGAGCGCAATAGCATCCGTGACGTGGGCAGCATCATGGAACG
TAGCGAAGATGTCGATCACTTTATCAGCTTTCCACGCAGAAACATATCGG
TATGTATTTTCTCGCAAAACGTGCCGCCTGATATCTTTAACAAATTGGTC
GGTAGCACAACCCACTCGAGCGTCTGTCACGATGGTTTCGAACAAATATT
GCGGAGAAATCTCCGTTTGGACGTAAGTGGAGACATTCTCGTACGCTCGG
TATACATCTTGAACGTCGATACTTTGAAAGGGCTTCAACTTCTCCTCAAA
GAAGTCAGTCATGTTTTTATGTTCGTTAAAAAAGCGTACGGGTTGCAGAC
CAACTTCTTGTGCAGTAGTTCCGATGAGAAGATCAACTTGGGCTTTGAAG
TCGCTCTTGTCCGTAGGAGACAAAGGTAAGGTTAATTTATCAAGCACTAA
AACAGAGCCAACAAATAAATCTTTCGTTGGAAAATCGAACAGGTCAAGCA
TAGCCCAGTTCGGATAGACAGTGCCGGGTATGGAATCAACAATTTCCTTT
GGTGTCAAACTATAAAAACATTCCCGAATTTCTTTCGCCGTAGTAAAATT
TTGGCATCTTGATCGCTCGATAAAAATTCGATTATCTTTTGCAGCTTCGG
TAAAGTTTCTTGGAAAATAAGGCGAACCGCTCATCGGTATACCACGTTTG
AAAAGACCATCCGCTAAAGGTGATGCTGCTAATGCAATGACTGAAGTACC
ACCAGAACTTTGACCTGAGACAGTCACTAAGTCTGGATTTCCACCGAAAT
TTCGCATATTTTCCTTCACCCATTTCAGTCCAAGGATTTGATCCATCAAA
CCATAGTTTCCGTACGACACATCTTCTTGCCACAGTTCTTCCAGACTTAG
CCAACCGAACGCATTCAACCGGTAACTAAGGCTGACTGCGACAACGTTCA
TTTCTGAAGCAAACTCACCATCAGGATAATATCCAGGTAAATCAGCGTAA
GCATTCATCAGGTACCCTCCATGAATCCACACGAAGACTGGTAGATTAGC
ATTCTCATCCAATGTCGGTGTGTGAATATGAAGATAAAGACAATCTTCTG
AAGGTTCTCTCTCCACCGGTGGAAAAGGTGGAGGGTTGTATTGAATACAT
AGAGTATTTGAAATGTTGGCGATGTAGATGTCAGAGAGTTTCTTCTTTGG
AACAGGTGGTTTCCAACGGAGCCGTCCAACGGGTGGTTCAGCAAACGGAA
TACCTTTGAAACGGTACGACAccttgttgttgtttgtttctttgaaACCT
TGAAATGTACCTGCTTGTGTTTggacgatgacgtcatcattattcGGGAC
GTCATCATCAGATGGAGTGCTTAACACAACAGCCAGTAN Run BLAST on NCBI transcript from alignment at scaffold_17:13682..15920+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050373 ID=TCONS_00050373|Name=TCONS_00050373|organism=Clytia hemisphaerica|type=transcript|length=2239bp|location=Sequence derived from alignment at scaffold_17:13682..15920+ (Clytia hemisphaerica)
cctagggtgaatttcacagaatttgataagaatacagtcattttgtattt
tgttaacagaaaaaattgcttaggaagaaatgtaattttaactcaaatgt
tcactcaaaagtccaaaactctcatgtttgtaaaaaaagtcaagtctaaa
aaagtaagaatacgttaagaatattttacccttaattttggcactttctt
aagaatacttgaccctcagccAAAGCatactattcttataaaaaaaagcg
tgtattgtgATATTCAATGTCAAGAGAAAACTGGTCTGAAAGTCGTACTG
ACGAGGGCTTTTTTATTATAAATggcgaaaaagaaaatttgtaaaagcGT
TTCATTCCCGTTCAGTATTCATTTGgcttaaaagtaaaagaatttAGAAT
ACTACTCAGACAGAATTTTATATCGAAGTTAAATCGAAGCGTCAAAATAT
TGTGAATAGCGTAAAGAAGAAACGAAATAACGAAAACGTTTTTAAGATGC
TAAACACATTATGACCATCATTACAATGCGGTATCGAGATTCAAGTCATG
AAAACATTAGTTCACTCTGACTACCAAATACATTGTAGCAACTAATAACA
TGTTTCTTTAATTAGTCCATACGTAAGGTAAGAACCCATTATCAGGGTCG
TTCCACATTAGACATTGTTTTTGATGATAATCATCTTCCAAACGGACCAC
ATCTCCATCACCGTTAAAAACGATCGTTTGACCAGCCATCGTTCCTTCCA
CCACACCTTCCACCATGAACTGTTTGAACACCCTCCGAATGGTTAACATG
AAATTCCGTTCCGATTCTGTCATggtttgtagatttttcttccACCACTT
AAAACCAAAGAGCGCAATAGCATCCGTGACGTGGGCAGCATCATGGAACG
TAGCGAAGATGTCGATCACTTTATCAGCTTTCCACGCAGAAACATATCGG
TATGTATTTTCTCGCAAAACGTGCCGCCTGATATCTTTAACAAATTGGTC
GGTAGCACAACCCACTCGAGCGTCTGTCACGATGGTTTCGAACAAATATT
GCGGAGAAATCTCCGTTTGGACGTAAGTGGAGACATTCTCGTACGCTCGG
TATACATCTTGAACGTCGATACTTTGAAAGGGCTTCAACTTCTCCTCAAA
GAAGTCAGTCATGTTTTTATGTTCGTTAAAAAAGCGTACGGGTTGCAGAC
CAACTTCTTGTGCAGTAGTTCCGATGAGAAGATCAACTTGGGCTTTGAAG
TCGCTCTTGTCCGTAGGAGACAAAGGTAAGGTTAATTTATCAAGCACTAA
AACAGAGCCAACAAATAAATCTTTCGTTGGAAAATCGAACAGGTCAAGCA
TAGCCCAGTTCGGATAGACAGTGCCGGGTATGGAATCAACAATTTCCTTT
GGTGTCAAACTATAAAAACATTCCCGAATTTCTTTCGCCGTAGTAAAATT
TTGGCATCTTGATCGCTCGATAAAAATTCGATTATCTTTTGCAGCTTCGG
TAAAGTTTCTTGGAAAATAAGGCGAACCGCTCATCGGTATACCACGTTTG
AAAAGACCATCCGCTAAAGGTGATGCTGCTAATGCAATGACTGAAGTACC
ACCAGAACTTTGACCTGAGACAGTCACTAAGTCTGGATTTCCACCGAAAT
TTCGCATATTTTCCTTCACCCATTTCAGTCCAAGGATTTGATCCATCAAA
CCATAGTTTCCGTACGACACATCTTCTTGCCACAGTTCTTCCAGACTTAG
CCAACCGAACGCATTCAACCGGTAACTAAGGCTGACTGCGACAACGTTCA
TTTCTGAAGCAAACTCACCATCAGGATAATATCCAGGTAAATCAGCGTAA
GCATTCATCAGGTACCCTCCATGAATCCACACGAAGACTGGTAGATTAGC
ATTCTCATCCAATGTCGGTGTGTGAATATGAAGATAAAGACAATCTTCTG
AAGGTTCTCTCTCCACCGGTGGAAAAGGTGGAGGGTTGTATTGAATACAT
AGAGTATTTGAAATGTTGGCGATGTAGATGTCAGAGAGTTTCTTCTTTGG
AACAGGTGGTTTCCAACGGAGCCGTCCAACGGGTGGTTCAGCAAACGGAA
TACCTTTGAAACGGTACGACAccttgttgttgtttgtttctttgaaACCT
TGAAATGTACCTGCTTGTGTTTggacgatgacgtcatcattattcGGGAC
GTCATCATCAGATGGAGTGCTTAACACAACAGCCAGTAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050373-exon-scaffold_17-1491911889:13682..15920 | TCONS_00050373-exon-scaffold_17-1491911889:13682..15920 | Clytia hemisphaerica | exon |
| TCONS_00050373-exon-scaffold_17-1510915933:13682..15920 | TCONS_00050373-exon-scaffold_17-1510915933:13682..15920 | Clytia hemisphaerica | exon |
| TCONS_00050373-exon-scaffold_17-1575043694:13682..15920 | TCONS_00050373-exon-scaffold_17-1575043694:13682..15920 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_17 | supercontig | scaffold_17:13682..15920 + |
Blast
BLAST of TCONS_00050373 vs. Swiss-Prot (Human)
Match: EST2 (Cocaine esterase OS=Homo sapiens GN=CES2 PE=1 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 2.382e-31 Identity = 94/264 (35.61%), Postives = 133/264 (50.38%), Query Frame = -1
Query: 1367 FKGIPFAEPPVGRLRWKPPVPKKKLSDIYIANISNTLCIQ---------YNXXXXXXXXXXXXEDCLYLHIHTPTLD-ENANLPVFVWIHGGYLMNAYADLPGYYPDGEFASEMNVVAVSLSYRLNAFGWLSLEELWQEDVSYGNYGLMDQILGLKWVKENMRNFGGNPDLXXXXXXXXXXXXVIALAASPLADGLFKRGIPMSGSPYFPRNFTEAAKDNRIFIERSRCQNFTTAKEIRECFYSLTPKEIV------DSIPGTV 2110
F GIPFA+PP+G LR+ PP P + S + +C+Q + SEDCLYL I+TP E +NLPV VWIHGG L+ A L Y A+ NVV V + YRL G+ S + + GN+G +DQ+ L+WV++N+ +FGGNPD VT+ G+S+GGTSV +L SP++ GLF I SG P +A + + ++ + C + +EI+ IPG V
Sbjct: 58 FLGIPFAKPPLGPLRFAPPEPPESWSGVRDGTTHPAMCLQDLTAVESEFLSQFNMTFPSDSMSEDCLYLSIYTPAHSHEGSNLPVMVWIHGGALVFGMASL---YDGSMLAALENVVVVIIQYRLGVLGFFST----GDKHATGNWGYLDQVAALRWVQQNIAHFGGNPDRVTIFGESAGGTSVSSLVVSPISQGLFHGAIMESGVALLPGLIASSADVISTVVANLSACDQVDSEALVGCLRGKSKEEILAINKPFKMIPGVV 314
The following BLAST results are available for this feature:
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