TCONS_00050358 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050358
Unique NameTCONS_00050358
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length158

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050358 ID=TCONS_00050358|Name=TCONS_00050358|organism=Clytia hemisphaerica|type=transcript|length=158bp
gaagattttttattttgttattgggTGAAATAAATGAGGAAATCTGTAAG
TTGGAAAGGCAATGTTATGAGGAGGGCCAACAAGCAAGACAATCGGCCTC
ACATGTTTTAGCTTTTATTGTACTACTTACGAGGTATCTACACTggattt
acttttgt
Run BLAST on NCBI

transcript from alignment at scaffold_169:134681..134838

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050358 ID=TCONS_00050358|Name=TCONS_00050358|organism=Clytia hemisphaerica|type=transcript|length=158bp|location=Sequence derived from alignment at scaffold_169:134681..134838 (Clytia hemisphaerica)
acaaaagtaaatccAGTGTAGATACCTCGTAAGTAGTACAATAAAAGCTA
AAACATGTGAGGCCGATTGTCTTGCTTGTTGGCCCTCCTCATAACATTGC
CTTTCCAACTTACAGATTTCCTCATTTATTTCAcccaataacaaaataaa
aaatcttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031885XLOC_031885Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050358-exon-scaffold_169-1491911889:134681..134838TCONS_00050358-exon-scaffold_169-1491911889:134681..134838Clytia hemisphaericaexon
TCONS_00050358-exon-scaffold_169-1510915933:134681..134838TCONS_00050358-exon-scaffold_169-1510915933:134681..134838Clytia hemisphaericaexon
TCONS_00050358-exon-scaffold_169-1575043694:134681..134838TCONS_00050358-exon-scaffold_169-1575043694:134681..134838Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_169supercontigscaffold_169:134681..134838 .
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050358 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top