TCONS_00050349 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050349
Unique NameTCONS_00050349
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2118

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050349 ID=TCONS_00050349|Name=TCONS_00050349|organism=Clytia hemisphaerica|type=transcript|length=2118bp
aaaaataaagttaaaagatcgaacgaaaatattttatccttaaaaatgtt
acaaatcttagtgttttgaaaatttctatcgagtTTTGTTTGTATTTAGA
GGAGAACAGACATTataactgattttttttcttttagtagATCAAACAAT
TCACAATTTCAAATcacattgaaaaatgaaaatgtgaaTTACCAAATTCC
ATCATGCCAAACTCACCGCAAAAGAAAGGAAGTCCAACACCTGCAGAATC
TGCACCAAGAATTTTGCGGTTCCTTGTCCGAATATGGGGTGTTGTCGCTG
GGCTTTGTATGCTTTCAACTGGATTATTTGCAATGATTACAATCACTGGT
AAATGTTTTGTTTCTGGTATCATTCAAATTGTATTTGGTTTGCTGGTTCT
ATGTTTAGAAGCACCAATGCTTTGTCAATTTTCAGAGATAGCTACAAAAC
TGAGTGATTGGGTTGAaagtcactttcgattttggtTAAGAGCAGCTCTA
TATTTATTaGCTGGAGTGCCACCAATAGTAATGTGTCTCGAATTATCCAC
TTTTATTGGTAGTGGATCATGTGTCGTACTTGCAGCCCTGTACGGAACAC
TTGCAATTGGCAGAAAGGGAGGAGATGTTGAAAAGAAGTCTAACGACGAT
GTTGAGATGAAAGCAACTCTAATGGACAATCAAGGTGATCCAAATGATAT
CGGTGGAGCTTTCCATTAGATCGGTTTCTGTTATCCAGTTACTCGTtctc
ttaagaaattgcatttCAATAATTGCCATCCAAACTTTCGAAGTTCTGTG
TTCTGTGTTTCAATCTTCTTATTACAGAATTTTGAGAGTGAATTATAGGT
ATGCATAGTATGCTTTCCAAACAAAGTTGTTTTTTGTGTTGCTTTCACCT
TTTTAATGTCAGCTCTACATAGTCCATGATGTCCCATTTTGTACTTTAAA
TTAGATATCgagttttcatcattttttgaatgAAGAAATGTTGTCAGTCA
ATCAAGTGTTAGTGTTTGATTTTTTAGAGGACTTTTCTGTAACTTGAACA
ACTTCTAGGTCTAATTTAAATCATtactttaaaatgttttgagTTAATGG
GTCTCGCACTTATTTTCGCGAACTGctagaaaatgacaaaaatcgTTATT
GTTGACAATATATATTTATGATTACTATTTAATTGTTAAATAAATGATTT
TATTTAATCATGTAGTTTTATTTGCAATGTTTTGACCTAGGTTTTTTACT
TCATTTTGAGATTGttattaaaattgtattttgggggtaaaatattatga
aattatttaagtatttttttaaacgtAGTAAGATAATATTTCTAAcataa
tttcattaaaatttgaCATGATTAGATTGTCAAAAAGATTGAAAGGTAAT
CGATCGGATaggttttatatattttcaagagggttttttgaaacaattca
TTTGGTCGCACAATGGGAGCACATTCTTTAATCTCTCGTACTCAGTCCCA
GTGCTCACGTttatcagtaaaatcaaaaagtggtgaaAGTTAGTAGCTCT
GGGtatgaaattgcatattttatttGTTTACTTACAAGTTTAACACTCTT
ATTCAATTATACTTGAATGATTATAAACCAAATTTGTGATATAATTTCCC
ATATGTCATAATAGTTTAATGAAATTCTTCAAACGAAGTATGTAGTGTTG
CTATGATACTGTAAATGTTACCTCGAAATTGAAAGGTTGTCATATCTTat
aagtttttaagttttttttttttttttggtttatgtaaacattttttact
tttgttcaagcacaaattttatttgaatatgTACGTTACCAAGAAAAGCA
CTAGAattttaaatataaacaaaaaacattcaaaattgttgaaaattaaa
tataccgattcgcgaaaattattttaaaaccaTTTATTTCTGGCAGAAAC
ATTTTTAAACGAAGTGTCCGAAACAATACCACTTTAATTTTGTGATCTTT
TAGTCAAACAGTCAAAATTTGCAATCTTGTTCGCTGGGGTTTGTACTGAA
ATTGGCGTCATCTCAtcataaatttatttattttgcacGTATTTCCTAAT
CCATTTGATTGGTCGAGG
Run BLAST on NCBI

protein sequence of TCONS_00050349-protein

>TCONS_00050349-protein ID=TCONS_00050349-protein|Name=TCONS_00050349-protein|organism=Clytia hemisphaerica|type=polypeptide|length=171bp
MPNSPQKKGSPTPAESAPRILRFLVRIWGVVAGLCMLSTGLFAMITITGK
CFVSGIIQIVFGLLVLCLEAPMLCQFSEIATKLSDWVESHFRFWLRAALY
LLAGVPPIVMCLELSTFIGSGSCVVLAALYGTLAIGRKGGDVEKKSNDDV
EMKATLMDNQGDPNDIGGAFH
Run BLAST on NCBI

transcript from alignment at scaffold_169:500212..506874-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050349 ID=TCONS_00050349|Name=TCONS_00050349|organism=Clytia hemisphaerica|type=transcript|length=6663bp|location=Sequence derived from alignment at scaffold_169:500212..506874- (Clytia hemisphaerica)
AAAAATAAAGTTAAAAGATCGAACGAAAATATTTTATCCTTAAAAATGTT ACAAATCTTAGTGTTTTGAAAATTTCTATCGAGTTTTGTTTGTATTTAGA GGAGAACAGACATTATAACTGATTTTTTTTCTTTTAGTAGATCAAACAAT TCACAATTTCAAATCACATTGAAAAATGAAAATGTGAATTACCAAATTCC ATCATGCCAAACTCACCGCAAAAGAAAGGAAGTCCAACACCTGCAGAATC TGCACCAAGAATTTTGCGGTTCCTTGTCCGAATATGGGGTGTTGTCGCTG GGCTTTGTAAGTATATCATTGTTAGTTATAATAGGTGTCAGATTTTATAG AGAGTAGACAATTTTGTTACTTTTTATGGTTTTTTAGCAGCCTTTCTGGG TGGGTACACAAAGTTTAAGGACAGGATTTCAATGGTATAATTTTTCCTTG GGGGCATCTGTGACATGCTCTGAAAACTGGATTGTATGAAACGTGGGACT GCTGCATTTCTGGTCTGTTCAATTGTATTTAATTATGTTCGATTGATTCA ACTGTATTAGATTTTATTCGCTTTAGTACGGTACTTTAAAGCGCTCGGCC GTCCACGCTAAAAAGCCCTAACCGAGTGATCCAATTTAATTTAATCACAA TCAAACTCATCAAACGTAATCGAACGAAATCAAAGATTAATCAAATGTAA TTGACAATCAATCAAACCAATCGAACATAGTCAACTATCAATCGAACCAA TCTAACCTTACTCGAACACAGTCGAATATTACCCAGGAATCGGCCGTTCG ATTGAGATTCGATTACGTTCGACAATCGAATCGCAATTATTCGATTGCGT TTGATTACATTCAATTGAGCTTTTTGTTTGTAGTTATTCAGTTGACATCG TCTGGAAAAAACATAAACGTTTATAATAAGTTTATAATCTAAAACTACAG TCAAGGAATTCCCTCTATGCAGTACCGTCAACTGCTCTAACTTGACAAAA CATGGAATGGCAATCGGCCACCATTTCACCGAACCTCCAAAGTCATTTGA TTTGAAATATTTGGGCGTTCTCTAATTCTCCAATCGGCGTCCGCTCATTT TGAATAAAAACAAAAAAGTTAACAAGAAAAGGGCGCGCTATCAGTGAAAG ATATCGTGACATGTTATGACAGAAAGTATGATTGATAGACTTGGTGGAGT TATCAAAACAAATTCGTCGTCAAAGGGATTTAGTGAAAATACAGGCCAGA TATCAACAAGTCCCATGTTTGACCAATCGTCCCAAGTTAGAGCAGTTGAT GGTATATTGTAATTGAGGGAATTCTATAACGAAACTATAATTATACAATT AAATATCATTCAAGCACTGCTGTATATAACTTGGTCTAGTATCAACATCC CTCACCTAATTCAAGCACCCGTTTTTAGAGCTGAAAATAATAGAACGATT GAAACACCGTCCGAGCACATGGCCCTCTATGAACCGCTCTTTGTTCGGTT TACAATTTTCTTAAGATAGAGTTTTTTCCTAGGGCTCCCCCTGACTTTGA ATTTAAAGTTTGCATCCTTTAGTGAAGTATTCATTTCTTGGGCTTTCATA CACCACTCTTTGATTGTCTTCCTTTCACTTTTCGTAAGATCTTCTGTCAC CCGGAAGGGCAATCTTTCTCCTTTAGTGATTGCTCTTAACACTGTATTTT TGTCTTCTTCATTTGCAAATCGGACTTTTATTGGTTGATAGCGTTTTTCA TCTTCCTTTTCCTTCAAAAATTTTCCGATTCTTTGAGTTCCTTCAATCTT TATATTCCTTAAGCGTAGTTTCAAAGGTAAGACTTTTTCATTTAGATATT CTTCGTCGTAGATTTTGGTTGACTCCTCTGAATCTTCAGTGGATTCGTCA ACACCATGAAAAATTAGATTGCACGCCGTGGATTGAATCTGTTGTTCCTC CTGTTTTTCCCTTCGAATTACGTTTTCTATGTTTTTCTCGATTTGCCTCG AGGCGACTGCTGCGTAGCTTTGTGATCTAATTTCTCCTTTCTTCTCAATG ATGTCTTCCATCTTCTTTTCGATCGTTGCCATTCTGGTCTCAAAGCTATC CTTTATTTCGCTGATCTTTGTATTAACGTCTTTGGACTTTAGTTGAGTGA TTTCTACGTCCATAGCATAGTGTCCTCCAGGGTTTGTTCCCTCCACCAAA TTCTTGATTTTTTTAAATCTCCCCCCTCTTTTTTTTCCCCCTATGACTTT TCAGTTTTTTAGTTTCCCCCTCTTTTTTGCTTTCCCCCCAGAANNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCCCCCCCCCCC CATATACCCGTATAAATTTCTCAAATTTCAACCTGACACAGACGTAAAAT TTTGCTGCAAAAGGAATACTAGACAAAATAGAACTTTATAAAGGGGGCGG AGGACACTATGACGTCCTGGGCTTTCATTATATTTTCGCAAGCTTTTATC TCCTTTCGGAATCCTGAAACTGGTGATGTTTCACATGAATTGACCCGTTC CAATAGATCAGGGGTGATCACGACACAGTTTTGACAGACAAAAGCTCTCG ATTCATATGTTAGACATAACTGGATTTGATAGACGGGGAGGTTTGAACAA ATGTAGTGTACGATTCGATTGCACTTTTTTACATTCAAGTGTGTCTTTGG ATCTTCCTTCTTCACTTGTAACACATTCAGATGGGCTGCAAAGGTCGTAA ATTGATGCTGAATTCGGTTGTTTTCGTAGATTTTTCTGAATATTCTCCGC CATCTTTACATCTTTTAACAACACATCCATTCAGTTTTTATTTGATGTCA GAATGAAAATCCTTTTTTAATAATGAGTGATTCCAACTTTCAACTTTCAT ATTATTTCTATCTCTAAAGAAGGGTTTTGATGAGGGACGTCGATATGAGA CCAACTTACAGTACAGACAGGGTAAATTTTGTTTGATATGTAAGTGAGAT TCAGTGAGTTATTATGAGTGGTCCTTTGAGTCGGATTATTTGAGCAATTT ATTGTTGAAAGAAAAAGTAAGTAAACCTCATAAATTTATCAAAGAATTTT TTTTTTGAGTAAGTTCACCACAATAAGTTTATTTTATTATCTCAAGGTAT GCTTTCAACTGGATTATTTGCAATGATTACAATCACTGGTAAATGTTTTG TTTCTGGTATCATTCAAATGTAAGTTGAGTTGTATAATTTATCTGAAGGG AACTATTTTGGGTTTTTCCCAAAAAATGGGTGTCAAACTCAAAAAACTTT CATACCATCATACTGCAAAACAAGCCTAGCAAGCTTTTGTGGTTAGGTAC GTGTCTTGCAATACGTTGCAATACAAGAGTGAATCACAATTAAGGTTCAA GTCCTTGCGGCTGCTATCAAAATTCCATCGAAATTCTCCTGGGAAGATGA GAAAGCCGCGAATCTCAGGTTTGCCTCAAGGAATTTGGCAATGAGATGCA CAGTAGTCATCTACCCTAATTCTACCATGATGATGTAAGATGGTCATCAT CATCAATCATGGCTCAATTACATAGTTAGTGGAAGCTACAACCTGGACTA TAAAAGAATACTAGAAATAATAAAATAAAAAATTTAGTTATAAAAGTTAG TTGATTAGTTAGTTATAAAGCTGGTTTGATGGGGGAGGCAGGCACTCAAG GTAAATGACCTACCGTACCTGTGGCCCTTAAGGGTCCCTTTTCCAACCTT CTCAAAGTGCACTGTATGGGTCGAAATGAGCAAAAATAAGGAAAAGTGCA CTTTAAGGGTCTAAAATTTGGGAAATCTGACCATATTATGCCTAAAAATG GTAAAAGCTTTTCAAGAAAATACTCAATAATGATCGACTTTTTCGCCCAA ATTTACTTAAATTTGGTTGATTTAGGAATATATTTCTTGTTTTTAGTGTA TTTGGTTTGCTGGTTCTATGTTTAGAAGCACCAATGCTTTGTCAATTTTC AGAGATAGCTACAAAACTGAGTGATTGGGTTGAAAGTCACTTTCGATTTT GGTTAAGAGCAGCTCTATATTTATTGTAAGTATATTATTTTTATAACACT TTCTGGAAAAAAAAGCATTTGTCAAATTCTTGATATACGTAAGTCATTTT TCTAGCGGAAACACCCGAAAAAATCCGGGGTTTGACCCTTCTTTGTTACT AAAAATAGAAACACAAAGTTCAAAATCCGGCTTTTTTCGAGTGCCTCCGT TAAAAAATATGACGTCATCTTGACTTACGCATATCAAGAATTGGGGTTAC TTCATAAGCAAGGGGTAAATTTTGTAGCCTCCAAACAGCAGAATTTCTGT TCTGAAAGCTAAAGATTATGCTAGCTGGCTAAAATAGAATGCAAATAAGT GGTTTGTGATATTCTGACTTGTTGAAAATAAATCAAAAGATATTTTTTAC CATTTTAGAGCTGGAGTGCCACCAATAGTAATGTGTCTCGAATTATCCAC TTTTATTGGTAGTGGATCATGTGTCGTACTTGCAGCCCTGTACGGAACAC TTGCAATTGGCAGAAAGTAAGCAATCTTGAGTTCGATTTTAAAAATATCT GGTTTACCTCCACCCGAACAACTTTATATATACTGAAATGCTGTAAATAT TGATAAATCAATGGAATACTGTCTCTCCATGTTATGTAATATTAGGGGGG TCAAAATCAAAATTTTCTTCCGTCTACGCAAACGTAAATGCAATATTATG ACCAGATTGTGTTGATTGTTTTTTATTAATACTAAGTGGAGACTGAATAA AATGACAAGATGATTGTATATTGATACGATAGGCTCCCAAAAAAGATTTA CGCAGGTGTGGAGATTGAAAAGTTTTATCCCCTAAGAGATTTCTATTGTA ATACCCCCAAAACAATCCCACAATGCATCGCTTTTTTAGAGAAATAAAAA ACTCCGATAAGATGTATTTTTAGCCACTTTAGTACTTTCTCCACTTTTGA CAAATATTATTTAGAAGAGTTTAATCGTATAATGATGACGGCTAATATTT TTGTTACTTAGGGGAGGAGATGTTGAAAAGAAGTCTAACGACGATGTTGA GATGAAAGCAACTCTAATGGACAATCAAGGTGATCCAAATGATATCGGTG GAGCTTTCCATTAGATCGGTTTCTGTTATCCAGTTACTCGTTCTCTTAAG AAATTGCATTTCAATAATTGCCATCCAAACTTTCGAAGTTCTGTGTTCTG TGTTTCAATCTTCTTATTACAGAATTTTGAGAGTGAATTATAGGTATGCA TAGTATGCTTTCCAAACAAAGTTGTTTTTTGTGTTGCTTTCACCTTTTTA ATGTCAGCTCTACATAGTCCATGATGTCCCATTTTGTACTTTAAATTAGA TATCGAGTTTTCATCATTTTTTGAATGAAGAAATGTTGTCAGTCAATCAA GTGTTAGTGTTTGATTTTTTAGAGGACTTTTCTGTAACTTGAACAACTTC TAGGTCTAATTTAAATCATTACTTTAAAATGTTTTGAGTTAATGGGTCTC GCACTTATTTTCGCGAACTGCTAGAAAATGACAAAAATCGTTATTGTTGA CAATATATATTTATGATTACTATTTAATTGTTAAATAAATGATTTTATTT AATCATGTAGTTTTATTTGCAATGTTTTGACCTAGGTTTTTTACTTCATT TTGAGATTGTTATTAAAATTGTATTTTGGGGGTAAAATATTATGAAATTA TTTAAGTATTTTTTTAAACGTAGTAAGATAATATTTCTAACATAATTTCA TTAAAATTTGACATGATTAGATTGTCAAAAAGATTGAAAGGTAATCGATC GGATAGGTTTTATATATTTTCAAGAGGGTTTTTTGAAACAATTCATTTGG TCGCACAATGGGAGCACATTCTTTAATCTCTCGTACTCAGTCCCAGTGCT CACGTTTATCAGTAAAATCAAAAAGTGGTGAAAGTTAGTAGCTCTGGGTA TGAAATTGCATATTTTATTTGTTTACTTACAAGTTTAACACTCTTATTCA ATTATACTTGAATGATTATAAACCAAATTTGTGATATAATTTCCCATATG TCATAATAGTTTAATGAAATTCTTCAAACGAAGTATGTAGTGTTGCTATG ATACTGTAAATGTTACCTCGAAATTGAAAGGTTGTCATATCTTATAAGTT TTTAAGTTTTTTTTTTTTTTTTGGTTTATGTAAACATTTTTTACTTTTGT TCAAGCACAAATTTTATTTGAATATGTACGTTACCAAGAAAAGCACTAGA ATTTTAAATATAAACAAAAAACATTCAAAATTGTTGAAAATTAAATATAC CGATTCGCGAAAATTATTTTAAAACCATTTATTTCTGGCAGAAACATTTT TAAACGAAGTGTCCGAAACAATACCACTTTAATTTTGTGATCTTTTAGTC AAACAGTCAAAATTTGCAATCTTGTTCGCTGGGGTTTGTACTGAAATTGG CGTCATCTCATCATAAATTTATTTATTTTGCACGTATTTCCTAATCCATT TGATTGGTCGAGG

Coding sequence (CDS) from alignment at scaffold_169:500212..506874-

>TCONS_00050349 ID=TCONS_00050349|Name=TCONS_00050349|organism=Clytia hemisphaerica|type=CDS|length=2580bp|location=Sequence derived from alignment at scaffold_169:500212..506874- (Clytia hemisphaerica)
GGGAGGAGATGTTGAAAAGAAGTCTAACGACGATGTTGAGATGAAAGCAA
CTCTAATGGACAATCAAGGTGATCCAAATGATATCGGTGGAGCTTTCCAT
TAGAGCTGGAGTGCCACCAATAGTAATGTGTCTCGAATTATCCACTTTTA
TTGGTAGTGGATCATGTGTCGTACTTGCAGCCCTGTACGGAACACTTGCA
ATTGGCAGAAATGTATTTGGTTTGCTGGTTCTATGTTTAGAAGCACCAAT
GCTTTGTCAATTTTCAGAGATAGCTACAAAACTGAGTGATTGGGTTGAAA
GTCACTTTCGATTTTGGTTAAGAGCAGCTCTATATTTATTGTATGCTTTC
AACTGGATTATTTGCAATGATTACAATCACTGGTAAATGTTTTGTTTCTG
GTATCATTCAAATATGCCAAACTCACCGCAAAAGAAAGGAAGTCCAACAC
CTGCAGAATCTGCACCAAGAATTTTGCGGTTCCTTGTCCGAATATGGGGT
GTTGTCGCTGGGCTTTGGGAGGAGATGTTGAAAAGAAGTCTAACGACGAT
GTTGAGATGAAAGCAACTCTAATGGACAATCAAGGTGATCCAAATGATAT
CGGTGGAGCTTTCCATTAGAGCTGGAGTGCCACCAATAGTAATGTGTCTC
GAATTATCCACTTTTATTGGTAGTGGATCATGTGTCGTACTTGCAGCCCT
GTACGGAACACTTGCAATTGGCAGAAATGTATTTGGTTTGCTGGTTCTAT
GTTTAGAAGCACCAATGCTTTGTCAATTTTCAGAGATAGCTACAAAACTG
AGTGATTGGGTTGAAAGTCACTTTCGATTTTGGTTAAGAGCAGCTCTATA
TTTATTGTATGCTTTCAACTGGATTATTTGCAATGATTACAATCACTGGT
AAATGTTTTGTTTCTGGTATCATTCAAATATGCCAAACTCACCGCAAAAG
AAAGGAAGTCCAACACCTGCAGAATCTGCACCAAGAATTTTGCGGTTCCT
TGTCCGAATATGGGGTGTTGTCGCTGGGCTTTGGGAGGAGATGTTGAAAA
GAAGTCTAACGACGATGTTGAGATGAAAGCAACTCTAATGGACAATCAAG
GTGATCCAAATGATATCGGTGGAGCTTTCCATTAGAGCTGGAGTGCCACC
AATAGTAATGTGTCTCGAATTATCCACTTTTATTGGTAGTGGATCATGTG
TCGTACTTGCAGCCCTGTACGGAACACTTGCAATTGGCAGAAATGTATTT
GGTTTGCTGGTTCTATGTTTAGAAGCACCAATGCTTTGTCAATTTTCAGA
GATAGCTACAAAACTGAGTGATTGGGTTGAAAGTCACTTTCGATTTTGGT
TAAGAGCAGCTCTATATTTATTGTATGCTTTCAACTGGATTATTTGCAAT
GATTACAATCACTGGTAAATGTTTTGTTTCTGGTATCATTCAAATATGCC
AAACTCACCGCAAAAGAAAGGAAGTCCAACACCTGCAGAATCTGCACCAA
GAATTTTGCGGTTCCTTGTCCGAATATGGGGTGTTGTCGCTGGGCTTTGG
GAGGAGATGTTGAAAAGAAGTCTAACGACGATGTTGAGATGAAAGCAACT
CTAATGGACAATCAAGGTGATCCAAATGATATCGGTGGAGCTTTCCATTA
GAGCTGGAGTGCCACCAATAGTAATGTGTCTCGAATTATCCACTTTTATT
GGTAGTGGATCATGTGTCGTACTTGCAGCCCTGTACGGAACACTTGCAAT
TGGCAGAAATGTATTTGGTTTGCTGGTTCTATGTTTAGAAGCACCAATGC
TTTGTCAATTTTCAGAGATAGCTACAAAACTGAGTGATTGGGTTGAAAGT
CACTTTCGATTTTGGTTAAGAGCAGCTCTATATTTATTGTATGCTTTCAA
CTGGATTATTTGCAATGATTACAATCACTGGTAAATGTTTTGTTTCTGGT
ATCATTCAAATATGCCAAACTCACCGCAAAAGAAAGGAAGTCCAACACCT
GCAGAATCTGCACCAAGAATTTTGCGGTTCCTTGTCCGAATATGGGGTGT
TGTCGCTGGGCTTTGGGAGGAGATGTTGAAAAGAAGTCTAACGACGATGT
TGAGATGAAAGCAACTCTAATGGACAATCAAGGTGATCCAAATGATATCG
GTGGAGCTTTCCATTAGAGCTGGAGTGCCACCAATAGTAATGTGTCTCGA
ATTATCCACTTTTATTGGTAGTGGATCATGTGTCGTACTTGCAGCCCTGT
ACGGAACACTTGCAATTGGCAGAAATGTATTTGGTTTGCTGGTTCTATGT
TTAGAAGCACCAATGCTTTGTCAATTTTCAGAGATAGCTACAAAACTGAG
TGATTGGGTTGAAAGTCACTTTCGATTTTGGTTAAGAGCAGCTCTATATT
TATTGTATGCTTTCAACTGGATTATTTGCAATGATTACAATCACTGGTAA
ATGTTTTGTTTCTGGTATCATTCAAATATGCCAAACTCACCGCAAAAGAA
AGGAAGTCCAACACCTGCAGAATCTGCACCAAGAATTTTGCGGTTCCTTG
TCCGAATATGGGGTGTTGTCGCTGGGCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031877XLOC_031877Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050349-exon-scaffold_169-1575043694:506569..506874TCONS_00050349-exon-scaffold_169-1575043694:506569..506874Clytia hemisphaericaexon
TCONS_00050349-exon-scaffold_169-1575043694:503556..503628TCONS_00050349-exon-scaffold_169-1575043694:503556..503628Clytia hemisphaericaexon
TCONS_00050349-exon-scaffold_169-1575043694:502700..502828TCONS_00050349-exon-scaffold_169-1575043694:502700..502828Clytia hemisphaericaexon
TCONS_00050349-exon-scaffold_169-1575043694:502209..502316TCONS_00050349-exon-scaffold_169-1575043694:502209..502316Clytia hemisphaericaexon
TCONS_00050349-exon-scaffold_169-1575043694:500212..501713TCONS_00050349-exon-scaffold_169-1575043694:500212..501713Clytia hemisphaericaexon
TCONS_00050349-exon-scaffold_169-1510915933:506569..506874TCONS_00050349-exon-scaffold_169-1510915933:506569..506874Clytia hemisphaericaexon
TCONS_00050349-exon-scaffold_169-1510915933:503556..503628TCONS_00050349-exon-scaffold_169-1510915933:503556..503628Clytia hemisphaericaexon
TCONS_00050349-exon-scaffold_169-1510915933:502700..502828TCONS_00050349-exon-scaffold_169-1510915933:502700..502828Clytia hemisphaericaexon
TCONS_00050349-exon-scaffold_169-1510915933:502209..502316TCONS_00050349-exon-scaffold_169-1510915933:502209..502316Clytia hemisphaericaexon
TCONS_00050349-exon-scaffold_169-1510915933:500212..501713TCONS_00050349-exon-scaffold_169-1510915933:500212..501713Clytia hemisphaericaexon
TCONS_00050349-exon-scaffold_169-1491911889:506569..506874TCONS_00050349-exon-scaffold_169-1491911889:506569..506874Clytia hemisphaericaexon
TCONS_00050349-exon-scaffold_169-1491911889:503556..503628TCONS_00050349-exon-scaffold_169-1491911889:503556..503628Clytia hemisphaericaexon
TCONS_00050349-exon-scaffold_169-1491911889:502700..502828TCONS_00050349-exon-scaffold_169-1491911889:502700..502828Clytia hemisphaericaexon
TCONS_00050349-exon-scaffold_169-1491911889:502209..502316TCONS_00050349-exon-scaffold_169-1491911889:502209..502316Clytia hemisphaericaexon
TCONS_00050349-exon-scaffold_169-1491911889:500212..501713TCONS_00050349-exon-scaffold_169-1491911889:500212..501713Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050349-proteinTCONS_00050349-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_169supercontigscaffold_169:500212..506874 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.81459 3.8786 24.9048 36.5347 8.55692 7.70601 36.0707 40.0795 36.5122 25.417 25.246 25.9574 14.5805 13.5889 9.36565 10.5453 12.0647 14.531 14.3957 17.8276 14.3994 14.1287 8.0486 9.95266 18.1883 18.4346 24.413 17.669 23.1095 22.578
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019365TVP18/Ca-channel_flower
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050349 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top