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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050326 ID=TCONS_00050326|Name=TCONS_00050326|organism=Clytia hemisphaerica|type=transcript|length=1178bp
GTGATTTTGACCTCCAGACAACCTCCAGAACAGCAAAGAAAAGATATAAA
TGAATGAGCAGGAAAGTACACTATGGCTGGTTATGATCATTCGAAAGGAA
TTGGAATTAAAGAAATCACTGTTGTTGAAGTCAGGAATCCAATTGTTCAA
CATGAAGGTTCATTGAAACAATTCACAGACTATGAAGTCTGTATAAAAAC
AACAAGTAAAGCTTTTATCATTCCCCAATCCTCAGTAAGAAGGAGATATT
CAGATTTTGTTTGGTTGAAAAAATGGCTGGAAAAACAAAATGATGCTTTT
TCAAGAGTGAGAACACCTAAAATGCCGCCAAAGAAACTTATGGGTAAGAC
TGATCCAGATTTTATTCAAGCCAGAATGCGTGGTTTACAGAAATTCTTGA
GAAAGATTATTGAGCACAATGTCTTTCTTTCAGACAAGGCTCTTCATCTT
TTCTTACAAAGTACCATGAAAGTGAAACAAATTGAATGCTATTTGGTTGG
GAATTCAACAAAAGAGTTTGTCGATAACAGTGATGCTCTTGTATCTCATT
TTGAAGCTGAAAAGAAGCAGACTACTCAATCTGTGCTTCATAGTATCAGC
GAGAGTTTACCAATTGAGCAAAACGATGATAACCAGAGTGAAAGCTCTAG
ATCTAGAGCAGCAAGCTCCTATGGAAAAAGCCCTTCCTACAGTGCAAGCT
CAATCAGTACTAACTCTTTGTTGGACTCATTTGAAGCAATAAGTGTTTCT
GATTGTGAAGCCAATGACCGTGAGGAATTGACGTCAGTTGCTGTTATAGA
gcatttgaaaataaaacaacttGTGCGTGAAAGTGAGAATAAAGAGGAAA
GTGATGCAGATAGTTTGAAAGGAATGCAGGAGgatgaaaagaattttgac
CTTTTGGATGATGAACCGGTGAAGGATAAAAACAATGGTTCTCAGAATAG
TCTGGCTGAATGTGATAGACAGGACAAATAACATAACAAAATGttacttt
aattttttattttgatataaaacatatttttctaaaatatagATAAACTA
CTCTTTCAATCATAGGGTTTGGGTGGAAAGGCTCTTAAGGCCATGTTAGA
CACAACATTTTTTGCCAACATTTTAgagaattttctaaaaattggtaTAA
TTTTACCATATTTGAGCGTGTAAACATG Run BLAST on NCBI transcript from alignment at scaffold_169:450546..460362+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050326 ID=TCONS_00050326|Name=TCONS_00050326|organism=Clytia hemisphaerica|type=transcript|length=9817bp|location=Sequence derived from alignment at scaffold_169:450546..460362+ (Clytia hemisphaerica)
GTGATTTTGACCTCCAGACAACCTCCAGAACAGCAAAGAAAAGGTATAGG
ATCCAAAGGTATATctgtaattttaattttatgtaCATTTTATGCCTATT
TTCagtaaaaaaagaagacaaagtTTGCAAGAATTACAgcatattttttt
ggaaaattggggtAAATTGGGTGGGAGTAGATCTTGTATTTTCTAGTCTT
TGATCTcaagttttctttttgattatcaccagacgatctcaatcgaacgg
aatcgacgatcgaaccagtcaaaccaaatcgaacgcaatcgaccgattga
aattcgattgtcaatcaaacgtcaaaattctgggtaatattcgattggtt
cgattgttgttcgactggttcgatcgtcgatcgattccgttcgattgaga
tcgtctggctttattcttgcagcttcccaacatccaagctctcaaacatc
acaagccgaatgaaattactttcgattttctgtagaaattatgcgatgaa
caatccgggggtcaatgaatcgacgatcgaacgcaatcgaacgcaatcga
acatcaatcgaacgcactcgaatatcaatcgaatctgaaaattgcggtaa
cattcgattgagattcgattgcgttcgataatcgaatttcaatcggtcga
ttgcgttcgatttggtttaactggttcgatcgtcgattctgttcgattga
gattgtctggttaTCAGTTGGGtgtttttaagataaaaacagcAATAAGG
GATCcccgacaaaaaactttcaaattttttatcggAATGCCCGAAAAGGG
GGCTAGGAGTCCAACTATATACCGATaaaaaacaagtattgggaCGAaaa
gccaatttctttctgatttcgtccTCAAATTCCACTGAAAGCATGCAATT
TTCACTTGCTGTCACCTTCGTGCACAAATTTGCaactttacaaaaatatt
tttccattgcCAGGCATTGTCAATCAaactgtttgattaccgaactaatc
gaaccctatcgaacgatTGCTGTTCGATTAAGGAACCCAATCGAACTACC
TATCGAACAAGGAAAACCTTCGTAAAGTTTGACTGTTCGattcagtgaag
tcaagtttgaagatattctttattagaaaaacagttaaaagcagtcaaaa
cgcaatttcccttacctcctgagtttgtctttgttatgctaaaatataac
aaacctttgtcctgctgtctaattacaaaaacctccaatcactacttctc
cgccatcttgtNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcacttctccg
ccatcttgtttcactttaaatgccgtgttttaaaattccttagctacatt
atatgtacggaaaaggttttctccaggtttttttcAATCTCGGGATTAAA
CTTCGAGGGCGGTTCCGTccacttatttttatttcggCGTTAAGCGCCCc
gggatacttaacaataaaagagattttaagattaatgttgaaaagcatat
tttttcgataaatttaggcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNCAAAGATTATATTTCCGCCttgactttcactttcgctttcgtgt
tacgcgattccaattggatgaatacTGCTCGCNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNc
tgagcgtgaattctgattggatgaatacctgaaaagtaaacaatagtatg
taagtattttgcttatcaaaacctaaagatttccagggggttttatttac
tttacatggcgataattaagcctacaaaacaccgagaaaaaaacccaaca
tagaacaggtgtattttgtaatgtagaatatgatagcgtgaatctttttg
aTATTCTATGTCAGGATTTGTTCTCAATGACCCGTAACTATGCCcggggt
acccgttgctaagaccttatgttaaaaacgaaagcgattacggcaaaaag
tagcgattttcgtaatacctcaaatattcaTACTTGAGACTGTACTGCGA
TTATACGATTATGTATAGTTCGATATTGTTCGATCACAGTTCGATGAATC
CGATTGACAAGCTAGCtgtaaaacagcatctaataacatgaaaaagGACC
CTCGCGGCGTTCCGGAAACGTCTGGAGCAAAAAGTGCCGTTTTTATCATG
CTCCGGAACACTGGAAGATTCCGGAGCACTTCCGGTGTTCCGGAGATAGA
TTTTCGGCAATTGGTCTGCACCGGAACTCCAGAACGTTTCGGAGAAGATA
TCCAAGATATAATTACGATAGCGCTCGCTGTGCTAATCATGTGAAAACTA
CTGCGCACgtgcatatttttaaaatatcagctgactcacattttttaatt
ttttcgatatTTCCACCATTGATGCTTCCGAATataatgtgacaaattca
atttcatttaatGGCTGAACCATCATATTGTATCAATATTTCGAATATTT
TTTGTAATgcttaaaaaacagttttttatcatgtgttaaaaatcacttgc
tcctGAAGCACCGGAAGAGCTCCGGAACTTTCCagagagaaaaatagtgt
ttttttaacTGCTCCGGAAAACTCCAGAAGTTTTCGGAGTGCTGGGAGGG
TCatcatgaaaaccagaatatgattcttcaatgggaatcaaaactataaa
gtgcacttacaaacatcaatttgtcagatctaacaaaatcagtaaccgca
ctgtcatcattgacaataaaacaaactattttctgtcaagagccttgtaa
taattccaacaacttccatcgaaatgatctatcacagctcaatCAACCAT
TTTTAGCgtggtccgaggattgagccgagaactttTGCAGAGCGCTTGCA
GAACGCTTGCAGAACGCTTGCAGAACGCTTGCAGAACGCTTGCAGAACGC
TTGCAGAACGTCTGTGAGTTCTCGCgagggtgaaaaacttcaatctgtca
ctcattttctcaagcgaagagaaagcaaaataaattctagctttacgata
gtacCGTGGGGGAtgatcaatggatagtattcgattatcattatcccttt
attttcattcctagaacttttgcaaatgaaaggaaaaatagaaaagttgt
attttttactgctctattcacatactgaattgaaagatcttctatgtgac
gtttttttgcaaacttcaaaaaacttatttttgtgCCGCCTTTGCAGGAC
TTTGACTTAAGTGCTTGcatgcagcatagggtacaaagtccaaacatgtg
TGAGAAAGCGGAAAACGCTAGTGTGGGTTGGATAAGATCGAATGATAGGT
GAAGACATGATGTTATAAAAAGACTgaatatatttgacaatgaagaCATA
CTAAATAATCCCTAACTTTATCTTAGCTGATCTGGATTATGCCAATATAT
TAGTTAGATGAATTTGAATATGAAGATTCATGGTTGTCTTGTCGATGGTC
AGGCTTCAACTGTCCTTGCTGGAGAGAATGGACTCTCAAAACCACATGGC
ACAAGGAGGAGAGCTCACTCGGCCCAATCTCCCAGCAAGGAACTCAAAGG
AGAAGTGCACTGGGGGTCAGTAGAGATCTAGACTAGCCTCATGTTCAAAC
AATGATCTCTATTGTCAGGGCAAGATGGTAGACCTAGCCataatatatat
tatacaaACATATTATCCATGTAACATATAATACATCCTATAACATACAT
AAAACTTTCAATCATAATATATATAACCTTAGTTCTGGTTCCTTACACAT
gcatttcccgtaatttttgtatgaagagttaggcagtgctgcaaataagg
aaatGTGAGTTGGCCGGCAATTTTTACGAGCGTAGCATGTAAATTTTGAG
CAGGGGGtctgagaaaatttttggagTCTTACATtggctaaacacctatt
ttaatttaaaatctgTTCCTCTTTTATAGCGGTATTAAGCATCTAGTTGG
GTTGTAAAGCACTTTTTTATGCTGCTGTCAGTCAGTGTTTCTTTaatcaa
aatattatatataGGCATGCCAAAGCTATTCACTACCTAGAAAGTATTNG
TGTTTctttaatcaaaatattttcaggcaTGCCAAAGCTATTCACTACCT
AGAAAGTATTAATATTGCCTATAGTATTGTTAGGTGCACACAAGTAGGGT
AGTGTTTGTAACGAAGAAATTTAGATAGGTCAGCTATCTTTCAGTGATTC
AAGCGTTCAAACTGTAAAATTAAATAATGACAAACATAAGAAACTAGAAA
GAAAATGTGAACAAAACTAAGTTCTAAAGCTAGAGTGAGACTCGTACGAG
TGAAATGATTAAGTCCAGATCctataccgggtgtgccacaaaaagttacc
ctctttgatttgatattgcaggcagtagaaaagagatttttcaaagattg
tttccgaatcattcagaggaaagcctaacttaaaatttggtgtatcactt
tttaattttacttcattggttcaaaagttatgttcaaaaatctaaaatgt
caatttaaaaatatgtcaaaaaaaggTTGTAAATACGAAGGAACCAACTT
TTTAGAGCAGTTCTTATAATTATAGTTTGGTAAGTATGAGGAACTAAAAA
GAAATGTAAttaaattgattaaaaattacGAAAGAAGCCTATAAATTTTT
ACCGGACAAAGTGAAAACGTAAGCTTCAGAATGACCGGTAGAAACTACga
aatgaccggtaattaccggtcaccggccgttatttgcagcactgttaggt
ctatactgattgaggttcgatcagttcgattaagattgatgaagtttgat
tggttcgattagttcgatttaTATATACCTTGCcccccaattttttattt
atattcatTCCGAGAGCATATTGGCGGCTGcccagcagattttttttctg
tacATGGACGGAAGTATCATCAACGGTCGGGAGTAcctcatctttgttgt
ttggttttgttttttggaATTGCTTATGTCAGGGTTggtagtaacggctt
gtcactgtgccgggtgcatactcagtgtagctggaacctcgatattccag
gattagaaaaagctatacctgtcggcaaaaagaattttcccgggggtttg
aggaataaacagaactgctgtcatttgttttttatttaaccatatattta
aatttgcactcaaaaatacttaaataaataagttaataatattcaatata
ctatttgtatctctcagaaaataaacacttacagaacgacatagtttatc
atttggaatacccccgtgtttggaccattgTATTGTGGTCACAAAATAGG
GCGGAAGCTAAGTAActccctcagtgcaagattgtcgcctcatctttatt
cgcccatgcgagaatgcgagctaatcattttttctcgcgcgctcaagggg
aaaaggaaagtgattgatattctttgaaggaaaaacgtcagaaacaaacc
caaagaccaaaagatgtaNNCGGAACGCTGAAAAAGTCTAATTTcaatct
tccttaaggtaaagaggttgcgagatttggattagcgaggcaaaaattgc
taaaaagctggtaaaattgtaatcctcaaaaatcgaagttcaaGCCTCAA
tgatactcggcgccttgggccccgcagggttgctagtaacagCTGCCCAC
AAGCCATCCTCGCGGGCCATCCAATATCTATCCCAtcggatgggacaagc
tggagcttttacTAGCTCTTTTacgatttggttggtcgttggtcgatttg
taaaaaaaaagatcgtaatttttggacctacctccgggtaccccggtgga
ggttctataaattaacccatgtccgttcgtccgtccgtccgtctgttacc
agcttttctcaggattgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtg
gctgaagtggtttttcccggaaaattcttattcgccttaaaaaacggatt
ttcgtattttggggaaattccctttaaccaaatgagaaaatatagctttt
ctcaaagttgactcattatttttttctgattttttgcagaatgatgcaaa
atgacaatgcctaaaatgtgacggagccagatttttaaggaaaatttttt
tgggcaaatttgggccaaaaacagcttattaggttttttgggtctgaatg
gtttaagtgattttcgtatttggggaaattcctttttaccattttacatt
attcaacagacaagctttatttttccattctgaatttttgtacaattatt
gtcacttttttctaattttcatctgatgttaatcattaggtaggtccatt
cagcatgttgcttgttattactttctttaaagaaagtgcCATCTCTATTA
TATACTTCAAATGAGCAATGAGCGAAGCATACATATTAAAAAAGCTTGAA
CatcaatcaaactcatcgaacatcaatcgaaccctatcgaactTCATTGA
ACAAAGAACAGTCGCGAGATCAACGCGATGATTGACATGATTGGAGAAAA
TTGTGTTTTCAAAGAggtaaaagtttgttttgaaaattttggccgataag
agcaagggggggagggggtctgaagcttatTGGCCCAATGCCAAtaagaa
atttgaaagtttttttcgaaGACCCCTTATTGCtcattttggcaattttt
ttttttacttttctgctgattcagcatttcattgttgaaaaaattgccgt
tttcggcaataattgctcaaaagagcaataattgctgtttttattttaaa
cacCCTCAACTGATTATATGTTAACACGTTGGCTAAAGACCCATCGGGTG
CATGACTAAAAGAGccattccagaaattttctgtATTCATGATATATACA
CCACTCAAGAGTCTTcagagaacttttaaaatcttccagaaaaagtgacg
tattgggtggaaaattttaaaatttctcaaTCTCAGCACTCAGCTAAGGC
aaaagactctccagtggtgcatatcatgaataccccCTCTGGATGACACa
actttttgcaaaatttatgCCCTCAAGGAGAGGAGACATTGGAAATTCCA
CATTtctcatttttgagaaaatgccttgtaatttgatcatttttgagaaa
aagccttggaaatttatcttttttgaactttaggcttggaaattttgaat
ttatcaaAAACGATTTGcccttaaaaatcttttgtcgtCTGCCCCCCCCC
ATATATCAGATATATATATGCCCAAACTTTTGCAGGCCACTTggcaattt
tgaattttaaagagTCTTCAGAGGCAAAAATCCATAAGTTTGTGGTCCAA
ATTTGGCCTGATTATGTACAGCACTTAAAATACATAAGAATACTTCTGAT
GATGGTGATAAAagcttgaaatttggcacagatgacccttagagggttta
aaacttaattttaaacaataaCACAAAATTTAGTCACCTGACCAACTGCC
AATTAATGTAATCAGATGGCTGagtaagaaatttattttttgaaaatatt
caaaatctgatggtcaCAAAGAGCAagaaattctgatgaaaattgaggta
taaagcacgttttgaaaatgttctaaCAAAAACTTCATCAgtctttccag
gcaaaacttaaaaaacctTATAATGTTGGAacatttgaccaaattttatg
ttttatataagaattcATATACATATATCTGCAGACACATGTCtcgtcct
tcccaggactcatcAGTGCTGCTCAAgtaagcgagcatagactgctgttg
tcaccagagtgctGAAACACCATGAGTGTTGAGCTTtgcataatcgcttg
tggtaagCGGAGAAGCAACGCTTTAAATCAGATGCCCTCATCAAGGGGTT
GTAAACATGATTTTTTGTCTTCTCCCCTGAGCAAAACTACctctataata
tttttttaatactttATAATGCAAAATAATAGATATAAATGAATGAGCAG
GAAAGTACACTATGGCTGGTTATGATCATTCGAAAGGAATTGGAATTAAA
GAAATCACTGTTGTTGAAGTCAGGAATCCAATTGTTCAACATGAAGGTTC
ATTGAAACAATTCACAGACTATGAAGTCTGTATAAAAACAACAAGTAAAG
CTTTTATCATTCCCCAATCCTCAGTAAGAAGGAGATATTCAGATTTTGTT
TGGTTGAAAAAATGGCTGGAAAAACAAAATGATGCTTTTTCAAGAGTGAG
AACACCTAAAATGCCGCCAAAGAAACTTATGGGTAAGACTGATCCAGATT
TTATTCAAGCCAGAATGCGTGGTTTACAGAAATTCTTGAGAAAGATTATT
GAGCACAATGTCTTTCTTTCAGACAAGGCTCTTCATCTTTTCTTACAAAG
TACCATGAAAGTGAAACAAATTGAATGCTATTTGGTTGGGAATTCAACAA
AAGAGTTTGTCGATAACAGTGATGCTCTTGTATCTCATTTTGAAGCTGAA
AAGAAGCAGACTACTCAATCTGTGCTTCATAGTATCAGCGAGAGTTTACC
AATTGAGCAAAACGATGATAACCAGAGTGAAAGCTCTAGATCTAGAGCAG
CAAGCTCCTATGGAAAAAGCCCTTCCTACAGTGCAAGCTCAATCAGTACT
AACTCTTTGTTGGACTCATTTGAAGCAATAAGTGTTTCTGATTGTGAAGC
CAATGACCGTGAGGAATTGACGTCAGTTGCTGTTATAGAgcatttgaaaa
taaaacaacttGTGCGTGAAAGTGAGAATAAAGAGGAAAGTGATGCAGAT
AGTTTGAAAGGAATGCAGGAGgatgaaaagaattttgacCTTTTGGATGA
TGAACCGGTGAAGGATAAAAACAATGGTTCTCAGAATAGTCTGGCTGAAT
GTGATAGACAGGACAAATAACATAACAAAATGttactttaattttttatt
ttgatataaaacatatttttctaaaatatagATAAACTACTCTTTCAATC
ATAGGGTTTGGGTGGAAAGGCTCTTAAGGCCATGTTAGACACAACATTTT
TTGCCAACATTTTAgagaattttctaaaaattggtaTAATTTTACCATAT
TTGAGCGTGTAAACATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050326-exon-scaffold_169-1491911889:450546..450588 | TCONS_00050326-exon-scaffold_169-1491911889:450546..450588 | Clytia hemisphaerica | exon |
| TCONS_00050326-exon-scaffold_169-1510915933:450546..450588 | TCONS_00050326-exon-scaffold_169-1510915933:450546..450588 | Clytia hemisphaerica | exon |
| TCONS_00050326-exon-scaffold_169-1575043694:450546..450588 | TCONS_00050326-exon-scaffold_169-1575043694:450546..450588 | Clytia hemisphaerica | exon |
| TCONS_00050326-exon-scaffold_169-1491911889:459228..460362 | TCONS_00050326-exon-scaffold_169-1491911889:459228..460362 | Clytia hemisphaerica | exon |
| TCONS_00050326-exon-scaffold_169-1510915933:459228..460362 | TCONS_00050326-exon-scaffold_169-1510915933:459228..460362 | Clytia hemisphaerica | exon |
| TCONS_00050326-exon-scaffold_169-1575043694:459228..460362 | TCONS_00050326-exon-scaffold_169-1575043694:459228..460362 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_169 | supercontig | scaffold_169:450546..460362 + |
Blast
BLAST of TCONS_00050326 vs. Swiss-Prot (Human)
Match: SNX11 (Sorting nexin-11 OS=Homo sapiens GN=SNX11 PE=1 SV=2) HSP 1 Score: 115.546 bits (288), Expect = 3.233e-29 Identity = 62/147 (42.18%), Postives = 90/147 (61.22%), Query Frame = 1
Query: 109 KEITVVEVRNPIVQHEGSLKQFTDYEVCIKTTSKAFIIPQSSVRRRYSDFVWLKKWLEKQNDAFSRVRTPKMPPKKLMGKTDPDFIQARMRGLQKFLRKIIEHNVFLSDKALHLFLQSTMKVKQIECYLVGNSTKEFVDNSDALVSH 549
+E+ V V++P VQ+EGS + DY++ + T SKAF S VRRRY +FVWL+K L++ V P++P K T +FI+ R +GLQ FL K+++ V LSD LHLFLQS + V +IE + G ST + SDA++ +
Sbjct: 14 EEVITVRVQDPRVQNEGSWNSYVDYKIFLHTNSKAFTAKTSCVRRRYREFVWLRKQLQRNAGL---VPVPELPGKSTFFGTSDEFIEKRRQGLQHFLEKVLQSVVLLSDSQLHLFLQSQLSVPEIEACVQGRST---MTVSDAILRY 154
The following BLAST results are available for this feature:
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