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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050323 ID=TCONS_00050323|Name=TCONS_00050323|organism=Clytia hemisphaerica|type=transcript|length=2103bpRun BLAST on NCBI transcript from alignment at scaffold_169:419642..440617+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00050323 ID=TCONS_00050323|Name=TCONS_00050323|organism=Clytia hemisphaerica|type=transcript|length=20976bp|location=Sequence derived from alignment at scaffold_169:419642..440617+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00050323 vs. Swiss-Prot (Human)
Match: NUP88 (Nuclear pore complex protein Nup88 OS=Homo sapiens GN=NUP88 PE=1 SV=2) HSP 1 Score: 257.299 bits (656), Expect = 2.842e-74 Identity = 207/650 (31.85%), Postives = 329/650 (50.62%), Query Frame = 1
Query: 262 SQIQKLSLTTAPLFAVSKLKCSITGNHALLFGKHGLAIVELPRKWGDDNLFEGGKTKIQCRSTILDQSFYEHHLSIEVVNASWYPGSPTDSHLLVLTTDNCLRIYDITRPEQPMLRLPLFDNVSEASKSKL--------SMVLGETVVNMAIAP----PKEDSLGNK-----VYPVYVMQESGDVWVLHCKFAQNRIHVEQ-QGPLVMNPPADDNYGCNFXXXXXXXXXXXXXXXXXKTGTVYNCVVIVGDEEMDEMGNKSVSDYVERFPTESLYVYETIKLEMNLLNSSRQQVIGDPPELSDIMLIRDKSTTDRYISVSSGGIHTITLPWVHELSNFFGSDSQHCNQM-----EKPADVRYLLCTKPVEDSHASVTVCGCSVFED--GSTLMCILSNGE--IVPLQLKKPSEQHWEDNKPEAINRH----FSSPLRQLRGV-GQFQTYISKMLVKEATIP-IIKCGGSDDLIPPDVYFKLLTKTTQVLREEYIQKMLLAKAELDKRCKIL-REKKMXXXXXXXXXXXXXXXGDKGEELATKLEQAQENMAAITDRVSKVFRRIQRSSPVLSHEEKEWAQELKLMQNKVNKLKKFSEVIKTKHQNLVLQSTPMSLVNRSTSKPS--MATTQAIKIRGVLKDQGSVISQLV 2103
SQ Q+L PLF + ++ S T +H L G GL ++ELP++WG ++ FEGGK+ + C +T + + F+ S+ + +A+WYP D H+++LT+DN +RIY + P+ P + L SEA + L + LGET V P PK N YP+Y++ E+G+ ++ + + ++ + GPL M+P A+DNYG + C +LCLP P L +AT++G +Y+CVV+ G+EE D KS ++ P SLYV+E ++LE+ L +S + D + L RD RY G+H++ L W+H+L F GSD + + + E+ V ++LCTKP+ + G + D G T++CI S E I PL S H + P R SPLR L F+ +I +L + P +K D PP+ +LL++ TQV RE+YI K LAK E+ +R K+L +KK + + + ++L + E LA K E+A+E I +R+ K+ PVLS E++ +EL+L+ ++L+ IK Q M V S KP+ ++ Q I+ +LK++G I ++V
Sbjct: 96 SQYQRLLCINPPLFEIYQVLLSPTQHHVALIGIKGLMVLELPKRWGKNSEFEGGKSTVNCSTTPVAERFFTSSTSLTLKHAAWYPSEILDPHVVLLTSDNVIRIYSLREPQTPTNVIIL----SEAEEESLVLNKGRAYTASLGETAVAFDFGPLAAVPKTLFGQNGKDEVVAYPLYILYENGETFLTYISLLHSPGNIGKLLGPLPMHPAAEDNYGYDACAVLCLPCVPNILVIATESGMLYHCVVLEGEEEDDHTSEKSWDSRIDLIP--SLYVFECVELELALKLASGEDDPFDSDFSCPVKLHRDPKCPSRYHCTHEAGVHSVGLTWIHKLHKFLGSDEEDKDSLQELSTEQKCFVEHILCTKPL-PCRQPAPIRGFWIVPDILGPTMICITSTYECLIWPLL----STVH-PASPPLLCTREDVEVAESPLRVLAETPDSFEKHIRSILQRSVANPAFLKASEKDIAPPPEECLQLLSRATQVFREQYILKQDLAKEEIQRRVKLLCDQKKKQLEDLSYCREERKSLREMAERLADKYEEAKEKQEDIMNRMKKLLHSFHSELPVLSDSERDMKKELQLIP---DQLRHLGNAIKQVTMKKDYQQQKMEKV-LSLPKPTIILSAYQRKCIQSILKEEGEHIREMV 729 The following BLAST results are available for this feature:
BLAST of TCONS_00050323 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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