|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050316 ID=TCONS_00050316|Name=TCONS_00050316|organism=Clytia hemisphaerica|type=transcript|length=883bp
CTTGAATTTTATTACTTTCAGTGCACACAGATGAAGTGACGGGTGTCCTG
TACAGTAAAGatGGTTCAAGAATCTTGACTTGTAGCACAGACCAATATAT
CAAAGTGATCGATATTTCAACTGAAGTCGAAGTCTTCTCAAAAGAAATGA
ACGATCCTATAAAGTGTAGTTGTTGGGACGGCCAGATTGTCATCCTTGGT
ATGAATaatggtgacgtcatcattcttGATCTTATCAACCCTAGTAATTA
CAACAAACTCAAATCACACAAAGGTGATGTACATAGCCTGGCGGTTTGTC
AGAAAGGAAAGTTTTTGGTGAGCGGTGGAGAAGATGGTTACTTGGCTGTT
TGGAGGTGATAAAGGGTGTTTTGTTCACGCGGACCGCATCAACGCCCTCG
AGTTCTTGTTGTCTTCTTCAGACAAATTgacatttaaaaaagaaaaatta
ttttcaactttcgtttttggttTCACATACACAATTTTGACGTATTGCCT
CCGAATTTGGATATATAATTCAAGTTTTTTACTGACGAAAAAAGGTAGCG
AACCTTTGTTCGTTAGAAATATGCGGCACTGGCATATGATTGTCAAACTT
AGTCCTTAAAAGATGCGTTGCACAACAAAGGCTATTATTATACAACAAGA
ATAGTTTAGGGTTCTCTAAGCTGTCTAATTAACGCTTgctattttttcga
ttttttccctCAATTAGGCACATAACAGTAACAACCTTATTTTGAGGGTA
GAGATGCAATTTCCAAACAATTTCCAAACCCCCTCTAAGTTAGTCCTTTT
GTTTATCATAATTTGAACGCACACTTTATTTCGACCAACCCCTCTCCGTA
TATTAGGCACCTAAGAGTAGTCATTTCCgcgta Run BLAST on NCBI transcript from alignment at scaffold_169:344843..347252+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050316 ID=TCONS_00050316|Name=TCONS_00050316|organism=Clytia hemisphaerica|type=transcript|length=2410bp|location=Sequence derived from alignment at scaffold_169:344843..347252+ (Clytia hemisphaerica)
CTTGAATTTTATTACTTTCAGTGCACACAGATGAAGTGACGGGTGTCCTG
TACAGTAAAGGTAAAACAGCCTCGTTTTGATTGCATTACAGAGGCGGTTC
TGAGGAGGGCCAAATTTAATGAAGGGGATGCATTATTTCCTAAAGGAATA
TGACTAAAAGAAACACCCTCCATCATAGATATAGAACACCCTCTCGGATA
CACCACTGTATCGTGGGAGAAATTATTTGaggaaaagtttgattaaattc
tGAGGGAAGTTTTGCACCACTGTGTTTactttcaatcattttttattttt
gaattttgaatgtattcatttatttttcagatGGTTCAAGAATCTTGACT
TGTAGCACAGACCAATATATCAAAGTGATCGATATTTCAACTGAAGTCGA
AGTCTTCTCAAAAGAAATGAACGATCCTATAAAGTAAGTGACCGGAACTT
TATGTGGATCGTGGTGTAGTTTGCAAAGCACGGAAAATTAATTTCCTATT
TAACGGCTAAAATTGCTCGTTCGAAAGTGGCAGCATTTGAGAAAGATTTA
TCAAACATCAATCGCATAACATCAATCGAATTcacatttttttgttgatt
cGATTCGTTTCGATTGCCTTtggaattgtttttttgttcagTTAATTTCA
TTGCTAGTCGAAGTTCATGTTCAATTAACAAACGGGGGAAGGACTTTATT
ATAGGACACGCGAGATAAAGATTTACTTTACATTCTTTAGGTGTAGTTGT
TGGGACGGCCAGATTGTCATCCTTGGTATGAATaatggtgacgtcatcat
tcttGATCTTATCAACCCTAGTAATTACAACAAACTCAAATCACACAAAG
GTATGCACGCTGGCTCTTATTAAACGCCCCTGTCATCCaccctttcaaaa
ttttaggcTCATGCTTCCCTGTTTTAACCCCCCttcaataaatttgaaaa
catgaATCATTATTACCGACCTAAAACAATAttagcgttttgattggtcg
agatcatcgagatatttgcgatatttcatatttttctagtatggaaatat
gaccgcgttgactagGTAAGCGACGGGAGAAAAATACATAAAGCTAAAGG
TCAGCAAGTCCAGTCATCAAACTCGTTCCAAAGTTCGCTTATATATATGA
TCACTCTGATAGTGCTCACAAATCTATCACGTCCATATCATTACAATCCA
CATAAAATTTAGCATGTTTTTCTATAATACGAATATCGCGATATTGTACT
CATTCAACAATCCGTTTCGTTAATTATCTTGGAACAGATCATATTCCAGT
AGCCTGTACCACCCCACCCACGggcgttttttatattttgaaaaaacttg
ccgTGTGTCGGTATGTTTGGGTTAGCGAGATTCTGTGTCTCAGTTTGTCC
AAGTTTGCTGGGGACAAAATCCTAAAAAACAAAAGCGTTGGAGTCCtcct
tttaaaaatgaaaaataccatTGCATTGATGCGTTAAATTTAACCTCACT
TTAGTTGAGCTAGATTGAATACTAAAATTAGCTACGCTCCACCGTATAGA
CGTCAGAGATTTgcgtaaaaattgaaattaatatattgtatataaattat
aaaaatgtcTGAGGCACGGAATGTTGCTTAACCGTAACAATCCGAACTTC
GCGTTATCTTTTAagtcagcgaagaagagtttggtacaggctaataTGCC
AGCATCACGTCCTGTTTTTAAATGACACGTTCCTCTTGGAATCCGTCtac
aaattatttcattggttGTTAAAATATTTGCATCTATTTTTGTATTTCAG
GTGATGTACATAGCCTGGCGGTTTGTCAGAAAGGAAAGTTTTTGGTGAGC
GGTGGAGAAGATGGTTACTTGGCTGTTTGGAGGTGATAAAGGGTGTTTTG
TTCACGCGGACCGCATCAACGCCCTCGAGTTCTTGTTGTCTTCTTCAGAC
AAATTgacatttaaaaaagaaaaattattttcaactttcgtttttggttT
CACATACACAATTTTGACGTATTGCCTCCGAATTTGGATATATAATTCAA
GTTTTTTACTGACGAAAAAAGGTAGCGAACCTTTGTTCGTTAGAAATATG
CGGCACTGGCATATGATTGTCAAACTTAGTCCTTAAAAGATGCGTTGCAC
AACAAAGGCTATTATTATACAACAAGAATAGTTTAGGGTTCTCTAAGCTG
TCTAATTAACGCTTgctattttttcgattttttccctCAATTAGGCACAT
AACAGTAACAACCTTATTTTGAGGGTAGAGATGCAATTTCCAAACAATTT
CCAAACCCCCTCTAAGTTAGTCCTTTTGTTTATCATAATTTGAACGCACA
CTTTATTTCGACCAACCCCTCTCCGTATATTAGGCACCTAAGAGTAGTCA
TTTCCgcgta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050316-exon-scaffold_169-1491911889:344843..344902 | TCONS_00050316-exon-scaffold_169-1491911889:344843..344902 | Clytia hemisphaerica | exon |
| TCONS_00050316-exon-scaffold_169-1510915933:344843..344902 | TCONS_00050316-exon-scaffold_169-1510915933:344843..344902 | Clytia hemisphaerica | exon |
| TCONS_00050316-exon-scaffold_169-1575043694:344843..344902 | TCONS_00050316-exon-scaffold_169-1575043694:344843..344902 | Clytia hemisphaerica | exon |
| TCONS_00050316-exon-scaffold_169-1491911889:345173..345275 | TCONS_00050316-exon-scaffold_169-1491911889:345173..345275 | Clytia hemisphaerica | exon |
| TCONS_00050316-exon-scaffold_169-1510915933:345173..345275 | TCONS_00050316-exon-scaffold_169-1510915933:345173..345275 | Clytia hemisphaerica | exon |
| TCONS_00050316-exon-scaffold_169-1575043694:345173..345275 | TCONS_00050316-exon-scaffold_169-1575043694:345173..345275 | Clytia hemisphaerica | exon |
| TCONS_00050316-exon-scaffold_169-1491911889:345583..345692 | TCONS_00050316-exon-scaffold_169-1491911889:345583..345692 | Clytia hemisphaerica | exon |
| TCONS_00050316-exon-scaffold_169-1510915933:345583..345692 | TCONS_00050316-exon-scaffold_169-1510915933:345583..345692 | Clytia hemisphaerica | exon |
| TCONS_00050316-exon-scaffold_169-1575043694:345583..345692 | TCONS_00050316-exon-scaffold_169-1575043694:345583..345692 | Clytia hemisphaerica | exon |
| TCONS_00050316-exon-scaffold_169-1491911889:346643..347252 | TCONS_00050316-exon-scaffold_169-1491911889:346643..347252 | Clytia hemisphaerica | exon |
| TCONS_00050316-exon-scaffold_169-1510915933:346643..347252 | TCONS_00050316-exon-scaffold_169-1510915933:346643..347252 | Clytia hemisphaerica | exon |
| TCONS_00050316-exon-scaffold_169-1575043694:346643..347252 | TCONS_00050316-exon-scaffold_169-1575043694:346643..347252 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_169 | supercontig | scaffold_169:344843..347252 + |
Blast
The following BLAST results are available for this feature:
|
