|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050304 ID=TCONS_00050304|Name=TCONS_00050304|organism=Clytia hemisphaerica|type=transcript|length=2823bpRun BLAST on NCBI protein sequence of TCONS_00050304-protein >TCONS_00050304-protein ID=TCONS_00050304-protein|Name=TCONS_00050304-protein|organism=Clytia hemisphaerica|type=polypeptide|length=833bp MSDIKLLLNSYEDMDQDDDYNKYYESSMLDQTNPDDLLSPLEKLRKYCTSRun BLAST on NCBI transcript from alignment at scaffold_169:91592..116085+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00050304 ID=TCONS_00050304|Name=TCONS_00050304|organism=Clytia hemisphaerica|type=transcript|length=24494bp|location=Sequence derived from alignment at scaffold_169:91592..116085+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_169:91592..116085+ >TCONS_00050304 ID=TCONS_00050304|Name=TCONS_00050304|organism=Clytia hemisphaerica|type=CDS|length=42534bp|location=Sequence derived from alignment at scaffold_169:91592..116085+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00050304 vs. Swiss-Prot (Human)
Match: PP4R1 (Serine/threonine-protein phosphatase 4 regulatory subunit 1 OS=Homo sapiens GN=PPP4R1 PE=1 SV=1) HSP 1 Score: 310.457 bits (794), Expect = 4.175e-90 Identity = 164/332 (49.40%), Postives = 235/332 (70.78%), Query Frame = 3
Query: 180 MSDIKLLLNSYEDMDQD------DDYNKYYE----SSMLDQTNPDDLLSPLEKLRKYCTSENIFTRQMVARSIIETVQSI-QNAQECLSLLEVITKLSNDIEPSVRNELMEQLPPCSLMIMDMR-LVPNAIADYILPVMVKYLTDSNNQVRKLTQNALLQLIDQEMITRIEVERQICPVLLTLTEPDSGDDFRTEAVGLMTKITPLIGSENAQHSFLRRFGDLCAD-PLFHVRKVCASNFGDMCSVLTQDTTEQQLLPLFARLCEDGVWGVRKACAETFIAVSGSCSRQVRYDRLSPLFVGLLCDKSRWVQMAAYTSLGQFISTFAEPERSG 1136
M+D+ LL ED+ +D DDY+ + S LD + D++L+PL +L KY SENIF RQMVARS+++T++ + + ++C+++LE I++L++D EP+VR ELMEQ+P +L + R +P A + ++LP++V+YL D NNQVRK +Q ALL L++QE+I R +VE ++CPVL+ LT PDS DD +TEAV +M K+ P++G + + L RF ++C D +FHVRKVCA+NFGD+CSV+ Q TE+ LLP F +LC D VWGVRKACAE F+AVS + +++R +LS LF+ L+ D SRWV+ AA+ SLG FISTFA P SG
Sbjct: 1 MADLSLL---QEDLQEDADGFGVDDYSSESDVIIIPSALDFVSQDEMLTPLGRLDKYAASENIFNRQMVARSLLDTLREVCDDERDCIAVLERISRLADDSEPTVRAELMEQVPHIALFCQENRPSIPYAFSKFLLPIVVRYLADQNNQVRKTSQAALLALLEQELIERFDVETKVCPVLIELTAPDSNDDVKTEAVAIMCKMAPMVGKDITERLILPRFCEMCCDCRMFHVRKVCAANFGDICSVVGQQATEEMLLPRFFQLCSDNVWGVRKACAECFMAVSCATCQEIRRTKLSALFINLISDPSRWVRQAAFQSLGPFISTFANPSSSG 329 HSP 2 Score: 273.863 bits (699), Expect = 2.248e-77 Identity = 134/287 (46.69%), Postives = 194/287 (67.60%), Query Frame = 3
Query: 1776 DEESLHSQTVVPPALLEHYISMTEASKVQTIDAELPRHCAYTLPGVVLALGADHWPLLKDTYELLSTDMQWKVRRSLAFSIHDLALILGEEICVADLVSVFNGFLKDLDEVRIGVLKHLYDFISLLPSELQKEYLQIFSEFRITDNMRNWRFREDLAQQLMNLSRLYTYQELADHICPVALELACDNVAEVRQNSFHLISILIRRIAEEES---NVEILGKFVASITVLGAPTQHWVKRKACSQIYQHFVEGQWYDGTRFAEHFLPNLISLCKDTVPNIRFIAAKAL 2627
+E Q VVP ALL+ Y+SMT+ S+ QT+D E+ +HCAY+LPGV L LG +W L++TYE L++DMQWKVRR+LAFSIH+LA+ILG+++ ADLV +FNGFLKDLDEVRIGVLKHL+DF+ LL + ++EYL EF +TDN RNWRFR +LA+QL+ L LY+ +++ D++ P+AL L D V+ VR S+ L+S +++++ V+++ + V + W R+A + Q +E +FA H +P+L++L D VPN+R + AK L
Sbjct: 607 EERRTKVQDVVPQALLDQYLSMTDPSRAQTVDTEIAKHCAYSLPGVALTLGRQNWHCLRETYETLASDMQWKVRRTLAFSIHELAVILGDQLTAADLVPIFNGFLKDLDEVRIGVLKHLHDFLKLLHIDKRREYLYQLQEFLVTDNSRNWRFRAELAEQLILLLELYSPRDVYDYLRPIALNLCADKVSSVRWISYKLVSEMVKKLHAATPPTFGVDLINELVENF----GRCPKWSGRQAFVFVCQTVIEDDCLPMDQFAVHLMPHLLTLANDRVPNVRVLLAKTL 889 The following BLAST results are available for this feature:
BLAST of TCONS_00050304 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.