TCONS_00050284 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050284
Unique NameTCONS_00050284
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length549

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050284 ID=TCONS_00050284|Name=TCONS_00050284|organism=Clytia hemisphaerica|type=transcript|length=549bp
CAGAAATCATGTAAATACCACCTCAGTTTGTACAGACTTCATTACTTGAC
AAAGACAAACGTCGAAATATTGTACACGTGTGTGTGTTTTTTCTGGGAAG
CTATATATCGCAACACTATGGAACATTGACTATTACGTTTTTTTCATCAT
GTCAATCCAGCATAAAGTTAACTGTACAGACACTGATTCTCTGGCTGGCA
TTACTTCTACCTTTCGATGTGCTGTTAAATGTATCACTTATCATTATCAT
ATCTCNTACGTTTTTTTCATCATGTCAATCCAGCATAAAGTTAACTGTAC
AGACACTGATTCTCTGGCTGGCATTACTTCTACCTTTCGATGTGCTGTTA
AATGTATCACTTATCATTATCATATCTCGTTTTTGGAAACATGTAAGCAA
TTTAATGTTTTTCCTGCTGGTCTAAGATTGGAAAAGAAACCGTTCATTCC
GTTTGTTTCGAGCGGAATTCTTGCATCATGGCAGGATACAATCAATTCTA
CTCAACGTCAGCTACTTGAAACATTGTTGTATGGTATCCACGACAAACT
Run BLAST on NCBI

protein sequence of TCONS_00050284-protein

>TCONS_00050284-protein ID=TCONS_00050284-protein|Name=TCONS_00050284-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
MSIQHKVNCTDTDSLAGITSTFRCAVKCITYHYHIXYVFFIMSIQHKVNC
TDTDSLAGITSTFRCAVKCITYHYHISFLETCKQFNVFPAGLRLEKKPFI
PFVSSGILASWQDTINSTQRQLLETLLYGIHDK
Run BLAST on NCBI

transcript from alignment at scaffold_168:60995..61543

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050284 ID=TCONS_00050284|Name=TCONS_00050284|organism=Clytia hemisphaerica|type=transcript|length=549bp|location=Sequence derived from alignment at scaffold_168:60995..61543 (Clytia hemisphaerica)
AGTTTGTCGTGGATACCATACAACAATGTTTCAAGTAGCTGACGTTGAGT
AGAATTGATTGTATCCTGCCATGATGCAAGAATTCCGCTCGAAACAAACG
GAATGAACGGTTTCTTTTCCAATCTTAGACCAGCAGGAAAAACATTAAAT
TGCTTACATGTTTCCAAAAACGAGATATGATAATGATAAGTGATACATTT
AACAGCACATCGAAAGGTAGAAGTAATGCCAGCCAGAGAATCAGTGTCTG
TACAGTTAACTTTATGCTGGATTGACATGATGAAAAAAACGTANGAGATA
TGATAATGATAAGTGATACATTTAACAGCACATCGAAAGGTAGAAGTAAT
GCCAGCCAGAGAATCAGTGTCTGTACAGTTAACTTTATGCTGGATTGACA
TGATGAAAAAAACGTAATAGTCAATGTTCCATAGTGTTGCGATATATAGC
TTCCCAGAAAAAACACACACACGTGTACAATATTTCGACGTTTGTCTTTG
TCAAGTAATGAAGTCTGTACAAACTGAGGTGGTATTTACATGATTTCTG

Coding sequence (CDS) from alignment at scaffold_168:60995..61543

>TCONS_00050284 ID=TCONS_00050284|Name=TCONS_00050284|organism=Clytia hemisphaerica|type=CDS|length=399bp|location=Sequence derived from alignment at scaffold_168:60995..61543 (Clytia hemisphaerica)
TTTGTCGTGGATACCATACAACAATGTTTCAAGTAGCTGACGTTGAGTAG
AATTGATTGTATCCTGCCATGATGCAAGAATTCCGCTCGAAACAAACGGA
ATGAACGGTTTCTTTTCCAATCTTAGACCAGCAGGAAAAACATTAAATTG
CTTACATGTTTCCAAAAACGAGATATGATAATGATAAGTGATACATTTAA
CAGCACATCGAAAGGTAGAAGTAATGCCAGCCAGAGAATCAGTGTCTGTA
CAGTTAACTTTATGCTGGATTGACATGATGAAAAAAACGTANGAGATATG
ATAATGATAAGTGATACATTTAACAGCACATCGAAAGGTAGAAGTAATGC
CAGCCAGAGAATCAGTGTCTGTACAGTTAACTTTATGCTGGATTGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031841XLOC_031841Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050284-proteinTCONS_00050284-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050284-exon-scaffold_168-1491911889:60995..61543TCONS_00050284-exon-scaffold_168-1491911889:60995..61543Clytia hemisphaericaexon
TCONS_00050284-exon-scaffold_168-1510915933:60995..61543TCONS_00050284-exon-scaffold_168-1510915933:60995..61543Clytia hemisphaericaexon
TCONS_00050284-exon-scaffold_168-1575043694:60995..61543TCONS_00050284-exon-scaffold_168-1575043694:60995..61543Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_168supercontigscaffold_168:60995..61543 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.26489	1.42456	0.835069	0.365117	1.40717	0.625594	0	0	0	0	0	0.0944072	0.0711723	0	0	0	0	0	0	0.232145	0.170656	0.249721	0.717848	0.435086	0	0.105855	0	0.152698	0.41758	0.117998
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050284 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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