TCONS_00050279 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050279
Unique NameTCONS_00050279
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length530

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050279 ID=TCONS_00050279|Name=TCONS_00050279|organism=Clytia hemisphaerica|type=transcript|length=530bp
AATCGGTCTATAGTTTCCTACCTCAAGTTTGGAATCTTTCTTGTGCAAAG
GTTTTATTGTAGCTCTTTTCAGACATTCTGGGTAGATGCCTTCACGAATA
GAGCAGTTAAAAATATGAGAGAGGATGGTGCTTGCTGTTGGAGAAATCAT
TGTGGGGATACTGGAGGGCCCCCTGAAGCTTTTTGGTAGTCTAGTTTATT
GATGAGTTTGAGTACTTCTGTAGGCGTTACCCTGGTTAAAAATATAGAGT
TTAGGGTAGGATCATTAAGATAGTCTGTGAATGCCTTGTCAGTTttagga
attttattttttgtatcaTCTGCTATTGTTCCATAGTAATTGTTAAAAGC
CTCTGCTATGTCTTTATCTCTTGTAACCTGAGTGTTGTTGTGTATAATTA
ATTTTGGAGAGAGGTCAGAACTCGACTTGATACCAATTATATCGTTCACC
ACCTTCCATTTTTGCTTtagattatttttgttttcagagAAGTAAATTTT
GTAATAGTTATTCTTGCTAATTCTTATGAG
Run BLAST on NCBI

transcript from alignment at scaffold_168:364583..365220-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050279 ID=TCONS_00050279|Name=TCONS_00050279|organism=Clytia hemisphaerica|type=transcript|length=638bp|location=Sequence derived from alignment at scaffold_168:364583..365220- (Clytia hemisphaerica)
AATCGGTCTATAGTTTCCTACCTCAAGTTTGGAATCTTTCTTGTGCAAAG
GTTTTATTGTAGCTCTTTTCAGACATTCTGGGTAGATGCCTTCACGAATA
GAGCAGTTAAAAATATGAGAGAGGATGGTGCTTGCTGTTGGAGAAATCAT
TGTGGGGATACTGGAGGGCCCCCTGAAGCTTTTTGGTAGTCTAGTTTATT
GATGAGTTTGAGTACTTCTGTAGGCGTTACCCTGGTTAAAAATATAGAGT
TTAGGTAGGATCATTAAGATAGTCTGTGAAAATGCCTTGTCAGTTTTAGG
NGTTTATTGATGAGTTTGAGTACTTCTGTAGGCGTTACCCTGGTTAAAAA
TATAGAGTTTAGGGTAGGATCATTAAGATAGTCTGTGAATGCCTTGTCAG
TTTTAGGAATTTTATTTTTTGTATCATCTGCTATTGTTCCATAGTAATTG
TTAAAAGCCTCTGCTATGTCTTTATCTCTTGTAACCTGAGTGTTGTTGTG
TATAATTAATTTTGGAGAGAGGTCAGAACTCGACTTGATACCAATTATAT
CGTTCACCACCTTCCATTTTTGCTTTAGATTATTTTTGTTTTCAGAGAAG
TAAATTTTGTAATAGTTATTCTTGCTAATTCTTATGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031836XLOC_031836Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050279-exon-scaffold_168-1575043694:364967..365220TCONS_00050279-exon-scaffold_168-1575043694:364967..365220Clytia hemisphaericaexon
TCONS_00050279-exon-scaffold_168-1575043694:364583..364858TCONS_00050279-exon-scaffold_168-1575043694:364583..364858Clytia hemisphaericaexon
TCONS_00050279-exon-scaffold_168-1510915933:364967..365220TCONS_00050279-exon-scaffold_168-1510915933:364967..365220Clytia hemisphaericaexon
TCONS_00050279-exon-scaffold_168-1510915933:364583..364858TCONS_00050279-exon-scaffold_168-1510915933:364583..364858Clytia hemisphaericaexon
TCONS_00050279-exon-scaffold_168-1491911889:364967..365220TCONS_00050279-exon-scaffold_168-1491911889:364967..365220Clytia hemisphaericaexon
TCONS_00050279-exon-scaffold_168-1491911889:364583..364858TCONS_00050279-exon-scaffold_168-1491911889:364583..364858Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_168supercontigscaffold_168:364583..365220 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.773658	0.595629	2.23822	2.58422	0.894275	1.36425	0.568377	0.931188	0.651947	0.230726	0.111974	0.441644	0.617951	0.726149	0.211897	0.0673493	0.165938	0.290047	0.469952	0.737656	0.409085	0.199407	0.19299	0.160847	1.30529	1.85699	0.204674	0	0.195335	0.249966
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050279 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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