TCONS_00050279 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050279
Unique NameTCONS_00050279
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length530

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050279 ID=TCONS_00050279|Name=TCONS_00050279|organism=Clytia hemisphaerica|type=transcript|length=530bp
AATCGGTCTATAGTTTCCTACCTCAAGTTTGGAATCTTTCTTGTGCAAAG
GTTTTATTGTAGCTCTTTTCAGACATTCTGGGTAGATGCCTTCACGAATA
GAGCAGTTAAAAATATGAGAGAGGATGGTGCTTGCTGTTGGAGAAATCAT
TGTGGGGATACTGGAGGGCCCCCTGAAGCTTTTTGGTAGTCTAGTTTATT
GATGAGTTTGAGTACTTCTGTAGGCGTTACCCTGGTTAAAAATATAGAGT
TTAGGGTAGGATCATTAAGATAGTCTGTGAATGCCTTGTCAGTTttagga
attttattttttgtatcaTCTGCTATTGTTCCATAGTAATTGTTAAAAGC
CTCTGCTATGTCTTTATCTCTTGTAACCTGAGTGTTGTTGTGTATAATTA
ATTTTGGAGAGAGGTCAGAACTCGACTTGATACCAATTATATCGTTCACC
ACCTTCCATTTTTGCTTtagattatttttgttttcagagAAGTAAATTTT
GTAATAGTTATTCTTGCTAATTCTTATGAG
Run BLAST on NCBI

transcript from alignment at scaffold_168:364583..365220-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050279 ID=TCONS_00050279|Name=TCONS_00050279|organism=Clytia hemisphaerica|type=transcript|length=638bp|location=Sequence derived from alignment at scaffold_168:364583..365220- (Clytia hemisphaerica)
AATCGGTCTATAGTTTCCTACCTCAAGTTTGGAATCTTTCTTGTGCAAAG GTTTTATTGTAGCTCTTTTCAGACATTCTGGGTAGATGCCTTCACGAATA GAGCAGTTAAAAATATGAGAGAGGATGGTGCTTGCTGTTGGAGAAATCAT TGTGGGGATACTGGAGGGCCCCCTGAAGCTTTTTGGTAGTCTAGTTTATT GATGAGTTTGAGTACTTCTGTAGGCGTTACCCTGGTTAAAAATATAGAGT TTAGGTAGGATCATTAAGATAGTCTGTGAAAATGCCTTGTCAGTTTTAGG NGTTTATTGATGAGTTTGAGTACTTCTGTAGGCGTTACCCTGGTTAAAAA TATAGAGTTTAGGGTAGGATCATTAAGATAGTCTGTGAATGCCTTGTCAG TTTTAGGAATTTTATTTTTTGTATCATCTGCTATTGTTCCATAGTAATTG TTAAAAGCCTCTGCTATGTCTTTATCTCTTGTAACCTGAGTGTTGTTGTG TATAATTAATTTTGGAGAGAGGTCAGAACTCGACTTGATACCAATTATAT CGTTCACCACCTTCCATTTTTGCTTTAGATTATTTTTGTTTTCAGAGAAG TAAATTTTGTAATAGTTATTCTTGCTAATTCTTATGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031836XLOC_031836Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050279-exon-scaffold_168-1575043694:364967..365220TCONS_00050279-exon-scaffold_168-1575043694:364967..365220Clytia hemisphaericaexon
TCONS_00050279-exon-scaffold_168-1575043694:364583..364858TCONS_00050279-exon-scaffold_168-1575043694:364583..364858Clytia hemisphaericaexon
TCONS_00050279-exon-scaffold_168-1510915933:364967..365220TCONS_00050279-exon-scaffold_168-1510915933:364967..365220Clytia hemisphaericaexon
TCONS_00050279-exon-scaffold_168-1510915933:364583..364858TCONS_00050279-exon-scaffold_168-1510915933:364583..364858Clytia hemisphaericaexon
TCONS_00050279-exon-scaffold_168-1491911889:364967..365220TCONS_00050279-exon-scaffold_168-1491911889:364967..365220Clytia hemisphaericaexon
TCONS_00050279-exon-scaffold_168-1491911889:364583..364858TCONS_00050279-exon-scaffold_168-1491911889:364583..364858Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_168supercontigscaffold_168:364583..365220 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.773658 0.595629 2.23822 2.58422 0.894275 1.36425 0.568377 0.931188 0.651947 0.230726 0.111974 0.441644 0.617951 0.726149 0.211897 0.0673493 0.165938 0.290047 0.469952 0.737656 0.409085 0.199407 0.19299 0.160847 1.30529 1.85699 0.204674 0 0.195335 0.249966
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050279 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top