TCONS_00050232 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00050232
Unique Name	TCONS_00050232
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2468

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_168:5766..11152-

transcript sequence

>TCONS_00050232 ID=TCONS_00050232|Name=TCONS_00050232|organism=Clytia hemisphaerica|type=transcript|length=2468bp
GGGAAATTATGATCAGAATATCTTTATTGATTAGAATGTCAATCCATTTC
CACAAATGAAGAAGATGAATTCGAAGAAACTTATTTTGAACAGTGTGACG
ACATAAATGACAGTCATGATACCGATGACGAAAAAGAAGATCTATCAAAG
GCACTGGAGGAAGTAAAAACTATGGTAGGCGAAAGACCAAAGCGGACTTG
GGGAATGAGGGCAGAGAGAAACGATCAAAGATGGAGAGAATCAAAAGAAG
GTTTGTTAGAAGAGACGATCAGGAGAGAAGAGCAAGAgacattttgtttt
aaatgtggTCAAAGAGAGGCTGAAATTCGATGTTATTCGTGTACTCATGC
AATATTTCTTTGTACTGTTTGTGACACTGAAGTGCATAAATCCAAATCTT
TTCATGATCGCCAATGgtttaaggaattttataaaCCTCTCACCCCAAAA
GAACATATTGAAGATGGTCAAGTTGTCATCATTGAAAAACCATTGCTTCT
TACAAGTAAATGTTCTTTCTGTGGCCACTTTTGCGAAAGTTGTGACGTAC
AAGTCTTGTCAACCGCACCCATTACAGTTATCACAACCAAAGGACGCTTT
GATTTGAACAAATTTGAGCGAATTTGTTGTCATTGTACAGAGAAATCCAA
TCCCTTTCAAATACGAACGTTATTAAAGAATGGATATTGGCCTGTATCGC
TGAACTACGCTTTAACAGTCATTCGCGAAGATTGCTTTTTACTTTGGGAT
CGCTTTTCAAAGAACATGCCTGGATCTTCTCTTggaagttttttgaaatc
tttatctGACATCTCCATACATAATGGCAggGTTGGAACAATAAACCAAC
CGATGTTTGCTCACGCTTTCAAAGAGTACCAACATTTGAAATTTGATGTC
GAACAGTTGTGTTCACTGTCTTGGTTTGAATGTCCTGGCTGTGGTGATCA
GCAGCATTCTTGCCACGTGGATGGAAATAATAAATTGTATCGATACAAAA
CGTCTGGAAAacgTACTGCCAAACCTTATTATGGTGACATTTTTATTGTT
AAGAACGAAAAGGTCAATGATCATTTGGCAAAGCTGAATTACAGTGTCCG
TCAACCGAAAaattctGAACCTGTCAATTGCGGAGGCAATATATTAAAAG
CTGCTCAGAATGTGTCCAGGAAAAAGGCGTCTCTGGATGAAACGGGGTTA
GAGTATTGTGTGTGTCGACATGGTATTGCACAGAGCGGTGTCAATATGTT
TAGGGGAGAAATCTTCGGCTATGCTCATTACTTGCAAAAAGATCACATGG
TGTCTAAAAACGTTAAGTTTATATGGTATGATGTCATTTGCAAGTACTGG
TCATGGTTGAAGTCAAACGACCCGTTCTTAGCTGAAGAAATGAAACCTGC
CCTGTCAGTCTTACATGGAAAAATGCACCAGATGTCTTGTCAGATTGGCT
TTGGTGGTAGATGGACCAAGGGTGCTGCATTAACTACAGGAGAAGAAACT
GAGCAAGTTAACAGCTACTTGTCAAGACTCACCAACACAACAAAATACAT
GCTTCCTCAAAACCGCGAGGATACTATCACTGAATTTGCCATGGAGTGGA
ATCAAAGAAAGGTGAAAAGATCATCCAAAAGTTTGATGAAAAAGTATACA
AAGATAAAATTAAAGAAGGCAAAGATAAATTGATTGACGACATTGCGAAA
CTAAGATTCGAGATTGGAATGAGAAAGATGTCAATGGGTAAATTAGCAGA
TTCAAGCAAGCAAAGAACTAAACTTCGGAGAAAGAATGCCAAAGACAAAG
TAAAGATTACTGGTTTGGAGAACGAGCTCAAAGGTTTTTTTAATGGAGAC
GATTCTAGCTGGAACAAGTATATTGAAGAGAGAGAACGCGaaattaGCTC
GAGGAAAGAGAAGAAGCAAAAGGTTGAAGATGCAATGATTCTCACCAGAT
ACTTGGAGGAAAAGAAGCTTCTTGTAGAAGAGATGAAAAACATGCTGTGT
CATTATCGGGAAAAgctaatttcattaaaaaatgGGGAACTGTTTGACAA
ATTAAACGCAGAAAATGGATTCCAGCGTTCGAGTGTTACAGAAAAAGGAA
TGGAGAGTTTGAGACAGAAAACTCTCTCGTTCTGCACACAACAATTATTT
GACGCAGTTGATTTATTTGATAACATTATCACCGGTCAATCAGTGAAtct
agaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaag
aagtagaagaacaaaaagaagaagaagaagaagaagaagatattATATCA
GACACTGAGTCTGAAGACAATCCAGACGAAGATAAAGACTGAGTCGGCAG
ACAGACAGACtcttattttgtattttgtaccgggtgacccacgaaaaagt
tcggacctttctcggcgtcttgaggccgaacaaatgtcccaaagtgctcg
gaattttggtatttaaaa

Run BLAST on NCBI

transcript from alignment at scaffold_168:5766..11152-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00050232 ID=TCONS_00050232|Name=TCONS_00050232|organism=Clytia hemisphaerica|type=transcript|length=5387bp|location=Sequence derived from alignment at scaffold_168:5766..11152- (Clytia hemisphaerica)
GGGAAATTATGATCAGAATATCTTTATTGATTAGAATGTCAATCCATTTC
CACAAATGAAGAAGATGAATTCGAAGAAACTTATTTTGAACAGTGTGACG
ACATAAATGACAGTCATGATACCGATGACGAAAAAGAAGGTAAGCGCTGT
TATGCCAAATTTGTATTTTAAAACAACTAGCAGAATTATGAGTAAATGAA
CTAAAAATAACTTTGTTGCAGATCTATCAAAGGCACTGGAGGAAGTAAAA
ACTATGGTAGGCGAAAGACCAAAGCGGACTTGGGGAATGAGGGCAGAGAG
AAACGATCAAAGATGGAGAGAATCAAAAGAAGGTTTGTTAGAAGAGACGA
TCAGGAGAGAAGAGCAAGAGACATTTTGTTTTAAATGTGGTCAAAGAGAG
GCTGAAATTCGATGTTATTCGTGTACTCATGCAATATTTCTTTGTACTGT
TTGTGACACTGAAGTGCATAAATCCAAATCTTTTCATGATCGCCAATGGT
TTAAGGAATTTTATAAACCTCTCACCCCAAAAGAACATATTGAAGATGGT
CAAGTTGTCATCATTGGTAAGAAAGATTTAACAGTTATAAGTTATCATAA
CCAATCTTTTTCCATTTTTAAAGAATTTAGGTTTTTTATTAGTGACTCAA
CTTAAGTTTTTAGCTGTTTGTGTTGGGGCCGTAGTTAGAGTAAAATTTAT
TCTATGAAAGAATATTTTGGTATTATTTTACTATTTTATTATGTTTGGAT
ATTTAGAAAAACCATTGCTTCTTACAAGTAAATGTTCTTTCTGTGGCCAC
TTTTGCGAAAGTTGTGACGTACAAGTCTTGTCAACCGCACCCATTACAGT
TATCACAACCAAAGGTAGCTATATTTTTCAGTAGGAGTTGTTAAGAAATT
AAAACCCTGATGAACATATTGTGTCCTTTTACTTTCCGTTATTTATATGT
TAAATGCGGTTGTATGGAATATTCCATTAAGTTGTTATGACCGACCATTC
TTATCTCTCTTTGTAGGACGCTTTGATTTGAACAAATTTGAGCGAATTTG
TTGTCATTGTACAGAGAAATCCAATCCCTTTCAAATACGAACGTTATTAA
AGAATGGATATTGGCCTGTATCGCTGAACTACGCTTTAACAGTCATTCGC
GAAGATTGCTTTTTACTTTGGGATCGCTTTTCAAAGAACATGCCTGGATC
TTCTCTTGGAAGTTTTTTGAAATCTTTATCTGACATCTCCATACATAATG
GCAGGGTTTGTTTTTCTTATATAATTTTTATTTATTTAGTTTAACTTTTG
GATCAAGAGTTGAACTTTAATTGTTGAAGTCATAACGTTAGCCACCCCTA
GTATATATGTATATAAATTTTTAAGGTGAGGGTGGGGGCTGGCTATTTTT
TTCTGTAGCATTTAGAAATTTTCCATTGTTGTTTCACACTGCTCCATATT
GTTTACTTTCATATCAGAATTACTAAATATTTGGAGGCTAATAAAAAACC
TCAGATATTTGGGGGGGGGGCCTGAATCTTTTTTAGGGGACCTGATTTTT
TTGCCTGGGGCCTAAACCCTATGGAAGTTCAATAAAGCTTCAGTTTGACT
CATTTGTATTTTAATAGTTCCGGGATTTTCCTATTAGGTTGGAACAATAA
ACCAACCGATGTTTGCTCACGCTTTCAAAGAGTACCAACATTTGAAATTT
GATGTCGAACAGTTGTGTTCACTGTCTTGGTTTGAATGTCCTGGCTGTGG
TGATCAGCAGCATTCTTGCCACGTGGATGGAAATAATAAATTGTATCGAT
ACAAAACGTCTGGAAAGTCAGTATTAATTTCTTTTAAAGGTCGATCTTTA
AAAAATTTTAAAGAATAATATCTCAGACAGCTGTCTTGTCTTTGTTTATG
TTTATCTTATGATTGTCTTTTTAGTTATATCTAGTTATTATGTGAATAAT
CTATATTCGATTTTCTGATTAAAGATAGTGGCAAATCTATGCAATAACTA
TATTTTTCTTATTTTCATTTTTTAGACGTACTGCCAAACCTTATTATGGT
GACATTTTTATTGTTAAGAACGAAAAGGTCAATGATCATTTGGCAAAGCT
GAATTACAGTGTCCGTCAACCGAAAGTATGTATCATTTTCTTTTATTCTC
TACGTATTAGTTTACTTGTTGAGAAGATATGAAACCTTTTTCTGTTTTGA
AAGAAAAATGTTTATTGCTTGTTCTTTTTCAACAATACAATCAAAAATGA
ATTAGCAACAATTGCGAAATAATAAATCATAAGAAAAATATTCCTTGGAT
GCTGTTTGTATTTAATTTTTAGAATTCTGAACCTGTCAATTGCGGAGGCA
ATATATTAAAAGCTGCTCAGAATGTGTCCAGGAAAAAGGCGTCTCTGGAT
GAAACGGGGTTAGAGTATTGTGTGTGTCGACATGGTATTGCACAGAGCGG
TGTCAATATGTTTAGGGGAGAAATCTTCGGCTATGCTCATTACTTGCAAA
AAGATCACATGGTGTCTAAAAACGTTAAGTTTATATGGTATGATGTCATT
TGCAAGTACTGGTCATGGTTGAAGTCAAACGACCCGTTCTTAGCTGAAGA
AATGAAACCTGCCCTGTCAGTCTTACATGGAAAAATGCACCAGATGTCTT
GTCAGGTTGTCTTAAATTTTTACGTCTAATGTTCCTTTTTACATTTAACA
CTCACTGATTCTTTTTCTTCTTAACATTTTTCGCACTTTTCAAAGCTTTT
AATGTAACATCAATGATAACAGAATTTNGTCTTGTCAGGTTGTCTTAAAT
TTTTACGTCTAATGTTCCTTTTTACATTTAACACTGATTCGTTTTCTTCT
TAACATTTTTCGCACTTTTCAAAGCTTTTAATGTAACATCGATGATAACA
GAATTCGTAACTTTTAAAATGTGGTGTTAACGGTTTTTTCATGTATCTCG
ATAGATTGGCTTTGGTGGTAGATGGACCAAGGGTGCTGCATTAACTACAG
GAGAAGAAACTGAGCAAGTTAACAGCTACTTGTCAAGACTCACCAACACA
ACAAAATACATGCTTCCTCAAAGTAAATTTCATAGACTAAAATTGGTACA
TTGATTGGTATACAAATTTATAACAGATTATAAAAGTGAATAAATGCATT
TGAAATCTCTTTACCATAGACCGCGAGGATACTATCACTGAATTTGCCAT
GGAGTGGAATCAAAGAAAGGTGAAAAGATCATCCAAAAGTTTGATGAAAA
AGTATACAAAGGTAATTTAGTTTGAAGGATTGATTCTCTGTGGAAGGTTT
CTCATTTCTTCTTTTTCTTTTGCCACTTTTCTGTATAAAATTTTACAGGT
AGAAAAAGAGCTGAAGAAACTTAAAAGCAAGAAANTTTCTTTTGCCACTT
TTCTGTATAAAATTTTACAGGTAGAAAAAGAGCTGAAGAACCTTAAAAGC
AAGAAACAAGACGATCCAACATTAATAGACGAATTGAAATGCGAATTGCT
CATTTATTCACAAACAAGTAAAGCTTATCGGTTTAATTTTTATTGTTAAG
AATCAACGTTTACAATTTGAGAAACCTTTTCATACTTTCTATAAGACTTT
GTTCTCGTATGAATGTATCATTGTGTACTGAAGTCTCAAGATTAATGCTA
AATATTTCATCGCTTTCTATCGTAGATAAAATTAAAGAAGGCAAAGATAA
ATTGATTGACGACATTGCGAAACTAAGATTCGAGATTGGAATGAGAAAGA
TGTCAATGGGTAAATTAGCAGGTAAAAAAGTACAAAATGCATGATTTTTT
TTAAATGATCTGTTTATTTTCACTCATGAATTCTAATCTTAAGTCGACGT
ATGCAATTACGCAATTATGCAATTTTAAATTTTTCACTGAAGATATTATA
AAATACCGTTCATGTTCAGGAAAAAGAAAATAATTTATATTTAAAAAACT
TTAAAAGATCTAACTATTATTGATTATAGATTCAAGCAAGCAAAGAACTA
AACTTCGGAGAAAGAATGCCAAAGACAAAGTAAAGATTACTGGTTTGGAG
AACGAGCTCAAAGGTTTTTTTAATGGAGACGATTCTAGCTGGAACAAGTA
TATTGAAGAGAGAGAACGCGAAATTAGTATGTTTTTAACAAGCATGACTC
ATCTATCAATCAAGATCTGAATTCGATGATTTCTTCCATTTACCAAGGGG
TTTTCGGAAAGCATCAAATAAAAATTTTTCGGAGATTTAATTTCAAGAAA
TGACAAAAATGAAATAAAATATACATTTAGCATAATATAACTTAAATTTT
TTAGGCTCGAGGAAAGAGAAGAAGCAAAAGGTTGAAGATGCAATGATTCT
CACCAGATACTTGGAGGAAAAGAAGCTTCTTGTAGAAGAGATGAAAAACA
TGCTGTGTCATTATCGGGAAAAGCTAATTTCATTAAAAAATGGTATGATA
TTTGTGTTCGTATTTATTAAAAATTCTTCAAGATATTAAGGGAAATATGT
TTTGAATATTTTCATCAAGATAATCAAACAAACTTTGGCGCGTATTAATT
TTGGGCGGACGAGGTTATTTATTATTTTTATGCACTACCTGACTAGTCAT
AAGATTTGATTCCCTTTCCATGATAAAGAAATGCATTTAATGCACCCTTG
AGGTATTATTTTGACGCCCTTGATAATAGCTTCATTAGAACATTCCTGTT
ATTATCGTCATTTAAATTGATAAAATAACAAGTACAAAAGCATTTTATTA
ATGTCTTCTTTTCGTGGATTTGAGATCTCTGTGAAAAAAATAAGCAAAAA
TACTATAATAAAATATTTTTAACCACTATTCTACCATAGGGGAACTGTTT
GACAAATTAAACGCAGAAAATGGATTCCAGCGTTCGGTAAATACCTTATT
TACATATTATTTGAATGTTAGATAATTTCCCATGAATTTAGAATATAATT
CTTACAATAATTTATCTCATTATTTTTCACTGTCTCATTATGTTTTTCAG
AGTGTTACAGAAAAAGGAATGGAGAGTTTGAGACAGAAAACTCTCTCGTT
CTGCACACAACAATTATTTGACGCAGTTGATTTATTTGATAACATTATCA
CCGGTCAATCAGTGAATCTAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA
GAAGAAGAAGAAGAAGAAGAAGTAGAAGAACAAAAAGAAGAAGAAGAAGA
AGAAGAAGATATTATATCAGACACTGAGTCTGAAGACAATCCAGACGAAG
ATAAAGACTGAGTCGGCAGACAGACAGACTCTTATTTTGTATTTTGTACC
GGGTGACCCACGAAAAAGTTCGGACCTTTCTCGGCGTCTTGAGGCCGAAC
AAATGTCCCAAAGTGCTCGGAATTTTGGTATTTAAAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_031823	XLOC_031823	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_168	supercontig	scaffold_168:5766..11152 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.18595	1.7819	0.296102	0.0997974	2.10223	0.429214	0	1.95543	0.325623	1.27476	1.6623	0.687752	0.573653	2.27882	0.716072	0.70326	0	1.44847	0	2.02241	2.29067	1.5047	0	0.273854	1.57459	1.12357e-09	1.6338	2.08145	1.00608	1.31308

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00050232 vs. Swiss-Prot (Human)

BLAST of TCONS_00050232 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00050232 (transcript) - C. hemisphaerica