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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050229 ID=TCONS_00050229|Name=TCONS_00050229|organism=Clytia hemisphaerica|type=transcript|length=949bp
TTTCGCTTCACTAGATTTCAATGAGTTGAAAGTTTGTGATATAAGTGCTT
ATGGGAAAAAGACTCAAATACCAGCAAGtgataacaaaacaaaaagcgTG
CCATGGTACGACCTATACCAGTCCAGCTTCGTCAAGAACAACTCCAGCGA
CCATTGACGCTATATTTCAACGATACTTATACGCATGCGATTCGCTCGGA
AGCATCTAATGTCGATCTCGGATTTAAACAAACCGATAAAAAGAAACCAA
GTAATTCACTAGATTCGAAAAGTGGTTCCCACAATTCACTGGATACGAAA
AAGGATGGTGCAACACCAAAGAAGTCAAAAATAAGATTATTTaatttcat
gacgtcatcattgaGTAAGAGTCGAAATAAACTACAGACTTTTCAAGAGG
AAGGTGTATAAAATCTGTTTAGTATATCGAGTAAAGTGTTTTCTTGTAAC
ATTCCGTGATTCTTGTAGCACGTTCCGTTTTCATTTAAATCCACGATGAG
AGGCAACCTGGTACCCAGTCACTTTTTGGTTCTATTAATGGACTTGACAC
ATAGGTGTAAAAAAGCGACTGAAGGCACAGGGTTCGAGTTTGAATGGAGA
GAGCTTTTTCCTCTAATCATTCTAGTCCTATTGAAAATGTTTACGTATCT
TGTATTGATGAAGGCAGTGTTGCTTAAATCATTGCTCTCACAACGAAAAA
TGTGACAAAATCCAGGGATATGGGCTCTTGCAAACAGTATAACATGGCTG
TCTCGATTCTACCTCTTTCTAAAAGTTTATGTAACAGTTTCATAATATAA
TAGAAATGTCAACTatttttgccaccgcaggaagcctagaGCTTCCGAga
atggcattcatagcttcacgcataaggaagttgggcaaacatctcataat
tttgcgcgcgtttttcagtattttagttccagTTAAATGGTGTACCGGT Run BLAST on NCBI protein sequence of TCONS_00050229-protein >TCONS_00050229-protein ID=TCONS_00050229-protein|Name=TCONS_00050229-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
MVRPIPVQLRQEQLQRPLTLYFNDTYTHAIRSEASNVDLGFKQTDKKKPS
NSLDSKSGSHNSLDTKKDGATPKKSKIRLFNFMTSSLSKSRNKLQTFQEE
GV Run BLAST on NCBI transcript from alignment at scaffold_168:380930..382190+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050229 ID=TCONS_00050229|Name=TCONS_00050229|organism=Clytia hemisphaerica|type=transcript|length=1261bp|location=Sequence derived from alignment at scaffold_168:380930..382190+ (Clytia hemisphaerica)
TTTCGCTTCACTAGATTTCAATGAGTTGAAAGTTTGTGATATAAGGTAGA
GAAAATGTTACAAGGTTTATATTTGTCGGTGATTATTTTTAAGCGTGTTT
GTATGTTGTATAATTTATTTAATCGTGCTGAACGGATTTATTGATAACTC
CGTAATTAGTTATTACCAGGGATCGGGAattgaaacaaattttattAATC
ATTAATGCAAGCATAAATACTATCACTAAAGTCTTGAGATAtgatttctt
cttatttttactGATAGCAAAATAAATAGCATTGTTTGGGCTTGGAGTCG
AAATTTCCCATCTCTAAATAAGTCCATGCATTCACCAAAGTGACTACTTC
TCTTTAGTGCTTATGGGAAAAAGACTCAAATACCAGCAAGtgataacaaa
acaaaaagcgTGCCATGGTACGACCTATACCAGTCCAGCTTCGTCAAGAA
CAACTCCAGCGACCATTGACGCTATATTTCAACGATACTTATACGCATGC
GATTCGCTCGGAAGCATCTAATGTCGATCTCGGATTTAAACAAACCGATA
AAAAGAAACCAAGTAATTCACTAGATTCGAAAAGTGGTTCCCACAATTCA
CTGGATACGAAAAAGGATGGTGCAACACCAAAGAAGTCAAAAATAAGATT
ATTTaatttcatgacgtcatcattgaGTAAGAGTCGAAATAAACTACAGA
CTTTTCAAGAGGAAGGTGTATAAAATCTGTTTAGTATATCGAGTAAAGTG
TTTTCTTGTAACATTCCGTGATTCTTGTAGCACGTTCCGTTTTCATTTAA
ATCCACGATGAGAGGCAACCTGGTACCCAGTCACTTTTTGGTTCTATTAA
TGGACTTGACACATAGGTGTAAAAAAGCGACTGAAGGCACAGGGTTCGAG
TTTGAATGGAGAGAGCTTTTTCCTCTAATCATTCTAGTCCTATTGAAAAT
GTTTACGTATCTTGTATTGATGAAGGCAGTGTTGCTTAAATCATTGCTCT
CACAACGAAAAATGTGACAAAATCCAGGGATATGGGCTCTTGCAAACAGT
ATAACATGGCTGTCTCGATTCTACCTCTTTCTAAAAGTTTATGTAACAGT
TTCATAATATAATAGAAATGTCAACTatttttgccaccgcaggaagccta
gaGCTTCCGAgaatggcattcatagcttcacgcataaggaagttgggcaa
acatctcataattttgcgcgcgtttttcagtattttagttccagTTAAAT
GGTGTACCGGT Coding sequence (CDS) from alignment at scaffold_168:380930..382190+ >TCONS_00050229 ID=TCONS_00050229|Name=TCONS_00050229|organism=Clytia hemisphaerica|type=CDS|length=309bp|location=Sequence derived from alignment at scaffold_168:380930..382190+ (Clytia hemisphaerica)
ATGGTACGACCTATACCAGTCCAGCTTCGTCAAGAACAACTCCAGCGACC
ATTGACGCTATATTTCAACGATACTTATACGCATGCGATTCGCTCGGAAG
CATCTAATGTCGATCTCGGATTTAAACAAACCGATAAAAAGAAACCAAGT
AATTCACTAGATTCGAAAAGTGGTTCCCACAATTCACTGGATACGAAAAA
GGATGGTGCAACACCAAAGAAGTCAAAAATAAGATTATTTaatttcatga
cgtcatcattgaGTAAGAGTCGAAATAAACTACAGACTTTTCAAGAGGAA
GGTGTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050229-exon-scaffold_168-1491911889:380930..380974 | TCONS_00050229-exon-scaffold_168-1491911889:380930..380974 | Clytia hemisphaerica | exon |
| TCONS_00050229-exon-scaffold_168-1510915933:380930..380974 | TCONS_00050229-exon-scaffold_168-1510915933:380930..380974 | Clytia hemisphaerica | exon |
| TCONS_00050229-exon-scaffold_168-1575043694:380930..380974 | TCONS_00050229-exon-scaffold_168-1575043694:380930..380974 | Clytia hemisphaerica | exon |
| TCONS_00050229-exon-scaffold_168-1491911889:381287..382190 | TCONS_00050229-exon-scaffold_168-1491911889:381287..382190 | Clytia hemisphaerica | exon |
| TCONS_00050229-exon-scaffold_168-1510915933:381287..382190 | TCONS_00050229-exon-scaffold_168-1510915933:381287..382190 | Clytia hemisphaerica | exon |
| TCONS_00050229-exon-scaffold_168-1575043694:381287..382190 | TCONS_00050229-exon-scaffold_168-1575043694:381287..382190 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_168 | supercontig | scaffold_168:380930..382190 + |
Blast
The following BLAST results are available for this feature:
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