TCONS_00050201 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050201
Unique NameTCONS_00050201
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length523

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050201 ID=TCONS_00050201|Name=TCONS_00050201|organism=Clytia hemisphaerica|type=transcript|length=523bp
ATCAAAAACAACATCATACTATTATGAAGGGATAAAGGAATGAAGATAAA
AATCATAATTGTGGTCAGAAAGTTGATACAGTATAGAGAAGACGCAATAA
TTTTACTCCTTAGTTGAAAAACAAGGTGTGAATAAAATTGGGCTAAAATT
GATAAAGGTGAAGTATAGTTTTATATTGTAGCAAATACGGTACTGGTTTC
TAAATTTAGTACAAGGTATTTCTTAaaaacactgcaatggcttctttacg
ggtaccaattcaaaaaaaaactttgatcaaagagggtggatatagcttgg
tctagggatatataaaggtcagtggtgtAAAAGCATATCGTCATCAAGAT
TGAGGTAGATTATTGAAAAGACTGgtgaaaaataaatgtttttgtCATCA
ATGGTGAAAAAAGGGGATGGGGgtttaaagagagaaaaaaaacaacaaag
agaaGATATCGAAAAACATCATATTATTTTAAGTCTAATTGACGTCTTCG
TCTTCCGAGAGGATGTTTTTTAC
Run BLAST on NCBI

transcript from alignment at scaffold_167:1857274..1857796

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050201 ID=TCONS_00050201|Name=TCONS_00050201|organism=Clytia hemisphaerica|type=transcript|length=523bp|location=Sequence derived from alignment at scaffold_167:1857274..1857796 (Clytia hemisphaerica)
GTAAAAAACATCCTCTCGGAAGACGAAGACGTCAATTAGACTTAAAATAA
TATGATGTTTTTCGATATCttctctttgttgttttttttctctctttaaa
cCCCCATCCCCTTTTTTCACCATTGATGacaaaaacatttatttttcacC
AGTCTTTTCAATAATCTACCTCAATCTTGATGACGATATGCTTTTacacc
actgacctttatatatccctagaccaagctatatccaccctctttgatca
aagtttttttttgaattggtacccgtaaagaagccattgcagtgttttTA
AGAAATACCTTGTACTAAATTTAGAAACCAGTACCGTATTTGCTACAATA
TAAAACTATACTTCACCTTTATCAATTTTAGCCCAATTTTATTCACACCT
TGTTTTTCAACTAAGGAGTAAAATTATTGCGTCTTCTCTATACTGTATCA
ACTTTCTGACCACAATTATGATTTTTATCTTCATTCCTTTATCCCTTCAT
AATAGTATGATGTTGTTTTTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031806XLOC_031806Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050201-exon-scaffold_167-1491911889:1857274..1857796TCONS_00050201-exon-scaffold_167-1491911889:1857274..1857796Clytia hemisphaericaexon
TCONS_00050201-exon-scaffold_167-1510915933:1857274..1857796TCONS_00050201-exon-scaffold_167-1510915933:1857274..1857796Clytia hemisphaericaexon
TCONS_00050201-exon-scaffold_167-1575043694:1857274..1857796TCONS_00050201-exon-scaffold_167-1575043694:1857274..1857796Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:1857274..1857796 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.22883	0.11018	0.665526	0.534997	1.08465	0.731338	0.294914	0.278038	0.193987	0	0.344791	0.0776161	0.380276	0.560367	0.195228	0.13867	0.515248	0.087395	0.124393	0.25807	0.555375	0.645978	0	0	0.608463	0.108551	1.06294	0.514351	0.127799	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050201 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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