TCONS_00050185 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050185
Unique NameTCONS_00050185
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length639

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050185 ID=TCONS_00050185|Name=TCONS_00050185|organism=Clytia hemisphaerica|type=transcript|length=639bp
ttattttcaaaagatcaTACAAACATTTTCTTCCATATAAATATCAGTAC
ATTCGTTTTCACTGTAACAAAATGTGAATTTTGTCGAACGCCATTCGCAC
TCCATTGAATCATCAGATCGAACATGTATGAATAGCAAGCACCATTTCAT
GGAATCTTGGCAGCATGCGATATACTTCTCGAGATTACGCTCTTTACCGC
ATTTTTCCTCAGCTTCTCTCTGACATCTTGGTCCATTAGATATCTCAGTC
CCATGTACAAACTGACTTTTCATGAGAGTTAGAACTAAAACTAGAATTGC
TAAATTCTTCATTTCTTCAGTTCtttgcagtgttttttcaaatgACTTTA
AAGTTCCCAAAAGGGAAAGAAGGGTGGAAGCTCAAAAAATAATATGTTCT
CGTTATCCGGGCGTTACCCGTTTTGAAGTGCTAGTATTTATAATAGACTA
TAATAGACGTCATCCGCGTTTTTTTATACGCAATTAACAtttattccact
ttgcgactttttcgaatgagCCTGGGTTTTCGGGctgtaaacattcgatt
tttttgacgtcacttttaactttcgaagctcctgcagtagcaaaataatc
gaatttgcgtcaaagcacttgaaaagcttctatttttcg
Run BLAST on NCBI

protein sequence of TCONS_00050185-protein

>TCONS_00050185-protein ID=TCONS_00050185-protein|Name=TCONS_00050185-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
MKNLAILVLVLTLMKSQFVHGTEISNGPRCQREAEEKCGKERNLEKYIAC
CQDSMKWCLLFIHVRSDDSMECEWRSTKFTFCYSENECTDIYMEENVCMI
F
Run BLAST on NCBI

transcript from alignment at scaffold_167:1331611..1332249

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050185 ID=TCONS_00050185|Name=TCONS_00050185|organism=Clytia hemisphaerica|type=transcript|length=639bp|location=Sequence derived from alignment at scaffold_167:1331611..1332249 (Clytia hemisphaerica)
cgaaaaatagaagcttttcaagtgctttgacgcaaattcgattattttgc
tactgcaggagcttcgaaagttaaaagtgacgtcaaaaaaatcgaatgtt
tacagCCCGAAAACCCAGGctcattcgaaaaagtcgcaaagtggaataaa
TGTTAATTGCGTATAAAAAAACGCGGATGACGTCTATTATAGTCTATTAT
AAATACTAGCACTTCAAAACGGGTAACGCCCGGATAACGAGAACATATTA
TTTTTTGAGCTTCCACCCTTCTTTCCCTTTTGGGAACTTTAAAGTcattt
gaaaaaacactgcaaaGAACTGAAGAAATGAAGAATTTAGCAATTCTAGT
TTTAGTTCTAACTCTCATGAAAAGTCAGTTTGTACATGGGACTGAGATAT
CTAATGGACCAAGATGTCAGAGAGAAGCTGAGGAAAAATGCGGTAAAGAG
CGTAATCTCGAGAAGTATATCGCATGCTGCCAAGATTCCATGAAATGGTG
CTTGCTATTCATACATGTTCGATCTGATGATTCAATGGAGTGCGAATGGC
GTTCGACAAAATTCACATTTTGTTACAGTGAAAACGAATGTACTGATATT
TATATGGAAGAAAATGTTTGTAtgatcttttgaaaataa

Coding sequence (CDS) from alignment at scaffold_167:1331611..1332249

>TCONS_00050185 ID=TCONS_00050185|Name=TCONS_00050185|organism=Clytia hemisphaerica|type=CDS|length=306bp|location=Sequence derived from alignment at scaffold_167:1331611..1332249 (Clytia hemisphaerica)
ATGAAGAATTTAGCAATTCTAGTTTTAGTTCTAACTCTCATGAAAAGTCA
GTTTGTACATGGGACTGAGATATCTAATGGACCAAGATGTCAGAGAGAAG
CTGAGGAAAAATGCGGTAAAGAGCGTAATCTCGAGAAGTATATCGCATGC
TGCCAAGATTCCATGAAATGGTGCTTGCTATTCATACATGTTCGATCTGA
TGATTCAATGGAGTGCGAATGGCGTTCGACAAAATTCACATTTTGTTACA
GTGAAAACGAATGTACTGATATTTATATGGAAGAAAATGTTTGTAtgatc
ttttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031790XLOC_031790Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050185-proteinTCONS_00050185-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050185-exon-scaffold_167-1491911889:1331611..1332249TCONS_00050185-exon-scaffold_167-1491911889:1331611..1332249Clytia hemisphaericaexon
TCONS_00050185-exon-scaffold_167-1510915933:1331611..1332249TCONS_00050185-exon-scaffold_167-1510915933:1331611..1332249Clytia hemisphaericaexon
TCONS_00050185-exon-scaffold_167-1575043694:1331611..1332249TCONS_00050185-exon-scaffold_167-1575043694:1331611..1332249Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:1331611..1332249 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.581497	0	0.379742	0.199222	0.222529	0	0.509301	0.620103	6.23842	2.13778	3.09283	6.366	0.41635	0.0743012	0.242918	0.819872	0.0707157	0.131872	1.12637	0.611302	0.954872	1.40094	0.499466	0.769758	0	0.35303	2.76349	4.60881	0.828031	1.04175
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050185 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top