TCONS_00050175 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050175
Unique NameTCONS_00050175
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length223

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050175 ID=TCONS_00050175|Name=TCONS_00050175|organism=Clytia hemisphaerica|type=transcript|length=223bp
atttactggttcttataaaaaaaagagtgtaataaGAGGGAAGTTTTATT
TACTTCTAACCCCTTTCATGTTGCCGCCATATGCTTCAATATTTTTGGCT
CCCCAATGTGACCCTCCCCCCCGAAAACAAACAACTGGTTCGTtctatta
tcaaaagaaactttATCTGTTGAAATTTACTCATTTCTATGAGTGGCCTC
AATGGGCTGTCAGATCAATTCAT
Run BLAST on NCBI

transcript from alignment at scaffold_167:1049166..1049388

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050175 ID=TCONS_00050175|Name=TCONS_00050175|organism=Clytia hemisphaerica|type=transcript|length=223bp|location=Sequence derived from alignment at scaffold_167:1049166..1049388 (Clytia hemisphaerica)
ATGAATTGATCTGACAGCCCATTGAGGCCACTCATAGAAATGAGTAAATT
TCAACAGATaaagtttcttttgataatagaACGAACCAGTTGTTTGTTTT
CGGGGGGGAGGGTCACATTGGGGAGCCAAAAATATTGAAGCATATGGCGG
CAACATGAAAGGGGTTAGAAGTAAATAAAACTTCCCTCttattacactct
tttttttataagaaccagtaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031780XLOC_031780Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050175-exon-scaffold_167-1491911889:1049166..1049388TCONS_00050175-exon-scaffold_167-1491911889:1049166..1049388Clytia hemisphaericaexon
TCONS_00050175-exon-scaffold_167-1510915933:1049166..1049388TCONS_00050175-exon-scaffold_167-1510915933:1049166..1049388Clytia hemisphaericaexon
TCONS_00050175-exon-scaffold_167-1575043694:1049166..1049388TCONS_00050175-exon-scaffold_167-1575043694:1049166..1049388Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:1049166..1049388 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.37391	1.53208	0	0	1.59182	3.77362	17.2855	15.1171	1.98938	3.20902	5.62812	6.05419	3.95042	0	0.670262	0	0	1.36742	1.25478	0	0	0	2.94991	0	22.5958	35.8702	1.65411	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050175 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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