TCONS_00050164 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050164
Unique NameTCONS_00050164
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length521

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050164 ID=TCONS_00050164|Name=TCONS_00050164|organism=Clytia hemisphaerica|type=transcript|length=521bp
GAACGAAAGTGACACAAAACAAGTTGATCCATGTGATTCCTCGAATCTCA
ACCGAATGGTCTTTATCGCTAACGATACGAATCGAAAACGCTCGATTAGG
ATATTGGAAAAGTATTATTCATTTCTCAACTGGTGAAAAATCAAGTCGGT
TGCCGGCAATTTTTCTTTTCCCAGATACTGACACTTTACACATTTGCTAT
GACATTAACGGTGATGCAAACCATTGTCAAAGTCCACCAATCAAAATCGG
ACAAAGACACCACGTGGTAATTCAGCAGCAGTATATATCAAACGGTGAAT
ACAGATACtttaTCATAATCGATGGATTGGAAGTACATTCTGTAATCAAC
AAACAAGCGAAACAATTTTATAATGTTCAAGTTTTTACTGGTGATCCGTG
GCATGCTGCAGATGATTATATTTCGAATGTTGAATTCACTAATTATTTGT
AATCGTTTGTAATATTCTGATAATGAATCGATACTTTTATGGTAATTGTA
AATAAAAAGATACGTGTAAGA
Run BLAST on NCBI

protein sequence of TCONS_00050164-protein

>TCONS_00050164-protein ID=TCONS_00050164-protein|Name=TCONS_00050164-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
TKVTQNKLIHVIPRISTEWSLSLTIRIENARLGYWKSIIHFSTGEKSSRL
PAIFLFPDTDTLHICYDINGDANHCQSPPIKIGQRHHVVIQQQYISNGEY
RYFIIIDGLEVHSVINKQAKQFYNVQVFTGDPWHAADDYISNVEFTNYL
Run BLAST on NCBI

transcript from alignment at scaffold_167:527179..527699

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050164 ID=TCONS_00050164|Name=TCONS_00050164|organism=Clytia hemisphaerica|type=transcript|length=521bp|location=Sequence derived from alignment at scaffold_167:527179..527699 (Clytia hemisphaerica)
TCTTACACGTATCTTTTTATTTACAATTACCATAAAAGTATCGATTCATT
ATCAGAATATTACAAACGATTACAAATAATTAGTGAATTCAACATTCGAA
ATATAATCATCTGCAGCATGCCACGGATCACCAGTAAAAACTTGAACATT
ATAAAATTGTTTCGCTTGTTTGTTGATTACAGAATGTACTTCCAATCCAT
CGATTATGAtaaaGTATCTGTATTCACCGTTTGATATATACTGCTGCTGA
ATTACCACGTGGTGTCTTTGTCCGATTTTGATTGGTGGACTTTGACAATG
GTTTGCATCACCGTTAATGTCATAGCAAATGTGTAAAGTGTCAGTATCTG
GGAAAAGAAAAATTGCCGGCAACCGACTTGATTTTTCACCAGTTGAGAAA
TGAATAATACTTTTCCAATATCCTAATCGAGCGTTTTCGATTCGTATCGT
TAGCGATAAAGACCATTCGGTTGAGATTCGAGGAATCACATGGATCAACT
TGTTTTGTGTCACTTTCGTTC

Coding sequence (CDS) from alignment at scaffold_167:527179..527699

>TCONS_00050164 ID=TCONS_00050164|Name=TCONS_00050164|organism=Clytia hemisphaerica|type=CDS|length=450bp|location=Sequence derived from alignment at scaffold_167:527179..527699 (Clytia hemisphaerica)
TTACAAATAATTAGTGAATTCAACATTCGAAATATAATCATCTGCAGCAT
GCCACGGATCACCAGTAAAAACTTGAACATTATAAAATTGTTTCGCTTGT
TTGTTGATTACAGAATGTACTTCCAATCCATCGATTATGAtaaaGTATCT
GTATTCACCGTTTGATATATACTGCTGCTGAATTACCACGTGGTGTCTTT
GTCCGATTTTGATTGGTGGACTTTGACAATGGTTTGCATCACCGTTAATG
TCATAGCAAATGTGTAAAGTGTCAGTATCTGGGAAAAGAAAAATTGCCGG
CAACCGACTTGATTTTTCACCAGTTGAGAAATGAATAATACTTTTCCAAT
ATCCTAATCGAGCGTTTTCGATTCGTATCGTTAGCGATAAAGACCATTCG
GTTGAGATTCGAGGAATCACATGGATCAACTTGTTTTGTGTCACTTTCGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031769XLOC_031769Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050164-proteinTCONS_00050164-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050164-exon-scaffold_167-1491911889:527179..527699TCONS_00050164-exon-scaffold_167-1491911889:527179..527699Clytia hemisphaericaexon
TCONS_00050164-exon-scaffold_167-1510915933:527179..527699TCONS_00050164-exon-scaffold_167-1510915933:527179..527699Clytia hemisphaericaexon
TCONS_00050164-exon-scaffold_167-1575043694:527179..527699TCONS_00050164-exon-scaffold_167-1575043694:527179..527699Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:527179..527699 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.110886	0	0	0	0.121175	0.292386	0.136864	0.862396	0.593454	0.691225	0.530115	0.605003	0.332195	0.0645687	0	0	0.349974	0.850541	2.2768	1.09942	1.76965	0.651892	0.237066	0.610431	0.340642	0.7796	0.166402	0	0.128588
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013320ConA-like_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050164 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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