TCONS_00050144 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050144
Unique NameTCONS_00050144
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length504

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050144 ID=TCONS_00050144|Name=TCONS_00050144|organism=Clytia hemisphaerica|type=transcript|length=504bp
AATAAATCAACTTGTATTATTGTCTGTAGTTAAGGTCAcggaaaatgaca
aaaagtatCACTGTCTTATATTACTTGAAACACTTAGTAGCGGCTATCTA
ATTTCAGGATTAAATGCTTCAATCTTTCCTGATATTCAAGCATAACCCCT
CAATCTGTAgtcaataattaaaaaaaacttagcaTACACATGGAGAACTC
TCAGAATAACGAAAGTTCAGATCCGCATTATTTTCATGTTTAGGGACTTT
CGTCACTTGAGTCAATGATACAAAATCCAAAACCACAGACCAGTATCAGT
GTTTGTTTACGGAACTCaacgaattaaaaaatagtTCCGTTAAATCGAGA
ACATAAACTTACTGGACTGTAAAAGTATACTTAAATACAAAATTGtatca
aaaatgaaagaaaatctctacttaaagttttctttcacTTCGTTTGATGT
GTACACATTCAAATACTGAATGTGAcgaaaatagcaaaatttgaaagttt
aaac
Run BLAST on NCBI

transcript from alignment at scaffold_167:144243..144746

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050144 ID=TCONS_00050144|Name=TCONS_00050144|organism=Clytia hemisphaerica|type=transcript|length=504bp|location=Sequence derived from alignment at scaffold_167:144243..144746 (Clytia hemisphaerica)
gtttaaactttcaaattttgctattttcgTCACATTCAGTATTTGAATGT
GTACACATCAAACGAAgtgaaagaaaactttaagtagagattttctttca
tttttgataCAATTTTGTATTTAAGTATACTTTTACAGTCCAGTAAGTTT
ATGTTCTCGATTTAACGGAactattttttaattcgttGAGTTCCGTAAAC
AAACACTGATACTGGTCTGTGGTTTTGGATTTTGTATCATTGACTCAAGT
GACGAAAGTCCCTAAACATGAAAATAATGCGGATCTGAACTTTCGTTATT
CTGAGAGTTCTCCATGTGTAtgctaagttttttttaattattgacTACAG
ATTGAGGGGTTATGCTTGAATATCAGGAAAGATTGAAGCATTTAATCCTG
AAATTAGATAGCCGCTACTAAGTGTTTCAAGTAATATAAGACAGTGatac
tttttgtcattttccgTGACCTTAACTACAGACAATAATACAAGTTGATT
TATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031749XLOC_031749Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050144-exon-scaffold_167-1491911889:144243..144746TCONS_00050144-exon-scaffold_167-1491911889:144243..144746Clytia hemisphaericaexon
TCONS_00050144-exon-scaffold_167-1510915933:144243..144746TCONS_00050144-exon-scaffold_167-1510915933:144243..144746Clytia hemisphaericaexon
TCONS_00050144-exon-scaffold_167-1575043694:144243..144746TCONS_00050144-exon-scaffold_167-1575043694:144243..144746Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:144243..144746 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.95318	1.06576	0	0	0	0	0.101344	0	0	0	0	0	0.136579	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050144 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top