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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050141 ID=TCONS_00050141|Name=TCONS_00050141|organism=Clytia hemisphaerica|type=transcript|length=1707bp
tggttttgagtctaaacaagactttgttcggcctcagtggctcgccaaac
gtccaaagttttttctgccgCACCCGGTACTACCCCATCTGTTACCGACG
ATTCCAATTTTCCATCCTCCAGTACCGCAAGCAATGCCGCTGTCCACGTT
CTCCGAAAAACTTTCCCAAAAGCTGTCTCAAGAAAAGACTAAAGTGATCT
ACAAGCCATTGAAAAACAAGAGTGCTGAAAAGTTGAGAAAAGGTTATCTG
AATAAACACAAACGATTAATTAGAACACGCTCTCAAACTGAACGCCGCGG
TGTTCGCAAACTTTATCCAAAGAAACGCGCTGTTGGATTCAAGTTGATTG
ATGAAGAAGTTTTAATGAAAGCCTTTAATAATTTTACTGTTTGCAAAAAC
TGCAAGGCTTCTTCCTCTATTGAGATTCAAGAAAGTGAAAATCTTCGCAG
AGGCATGTGCGAAACATTGACATTGTTCTGTAAAAGCTGTTCGCACATAT
CCGAATTCAAAACCAGTCCACGCTCGTCAAATAAAATTCTTGCGTATGAT
GTGAACATCAGATCAGTGTATGCAGCTCAACAAATTGGAAGAGCAGGCCT
TTCAAAGTTTAACAACTTAATGGAACTTCCAGCCCCCGTAACATCAAAAC
CTTTCACACATATCCAAAACAATCTACTTGAAACCATTTCACAGCGCact
tccaaagttttgaaggaTGCCGCGGATAATTTACTAACCAAAACATTAAC
CGAAAATCCGAAAAACATAACTGTATTAGACAATGGGGAGATCATAGCTG
ATGTGTCTGTCATCGTAGATGGAACGTGGCAGCGTAGGGGTCATTCATCA
AAAATCGGGGTTGTTTTTGTCATCAGCGTCGAGACCGGAGAAGTTCTGGA
CTATGAGGTCAAAAGTTTATTTTGTCATTCCTGTTCAAAACGACAGAGTT
CTATGACAGAAAGTGatttccaaaaatggtatgAAACACATGCAAAGGAA
TGTGAAATTAATCACAAGGGAAGCTCTGATTTCATGGAGACCTCTGGCGC
GAAGGAAATTTTTCTGCGGTCAATCGATAAGTATAATCTAAAATACACTG
TGTTTGTTGGTGATGGTGATAGCTCATGCTTTGGCTCTGTAAAGGAAGCA
TGTGAGGAAGTGTATGGTGATGGTTACAATTTAAACAAGGAAGAATGTGT
TGGACATGTCCAAAAAAGAATGGGCACTAGGTTGAGGACCTATAAAAAGA
ATATGCGGGGTCAAAAGCTTGCTGACTGAAAGGGATCGGCGGGGGTGGGC
GACTGGCCGACAAATCCATCgacaaaatccaaaatttttatgGGCAATGT
ACTCGTAACAATGCAGGGGATAAAGATATCATGGTTAATGATATTTGGGC
AATCTACAAGCATATGATTATTGATGAGACCAAAACGCTTGACGAACAAC
ATGCTAATTACCCAAAAGATGAAGCGTCGTGGTGTAAGTATTTGTCGGAC
CGAGAAAACTATCACGAGAACAACAGATTGCCCTCTGTTTTTTTGGAAGA
GCTGAAGCCAATCTTTAATGCACTAACTGAGGATAAATTGCTTGATAGAT
GCCTAAAAGggcgctttgctagaagaatgacattcttctatggaattatt
aacaatttagccccttcgtatttacgtaactacctgccagtaagacttac
agcacca Run BLAST on NCBI protein sequence of TCONS_00050141-protein >TCONS_00050141-protein ID=TCONS_00050141-protein|Name=TCONS_00050141-protein|organism=Clytia hemisphaerica|type=polypeptide|length=425bp
GFESKQDFVRPQWLAKRPKFFLPHPVLPHLLPTIPIFHPPVPQAMPLSTF
SEKLSQKLSQEKTKVIYKPLKNKSAEKLRKGYLNKHKRLIRTRSQTERRG
VRKLYPKKRAVGFKLIDEEVLMKAFNNFTVCKNCKASSSIEIQESENLRR
GMCETLTLFCKSCSHISEFKTSPRSSNKILAYDVNIRSVYAAQQIGRAGL
SKFNNLMELPAPVTSKPFTHIQNNLLETISQRTSKVLKDAADNLLTKTLT
ENPKNITVLDNGEIIADVSVIVDGTWQRRGHSSKIGVVFVISVETGEVLD
YEVKSLFCHSCSKRQSSMTESDFQKWYETHAKECEINHKGSSDFMETSGA
KEIFLRSIDKYNLKYTVFVGDGDSSCFGSVKEACEEVYGDGYNLNKEECV
GHVQKRMGTRLRTYKKNMRGQKLAD Run BLAST on NCBI transcript from alignment at scaffold_167:47827..49533 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050141 ID=TCONS_00050141|Name=TCONS_00050141|organism=Clytia hemisphaerica|type=transcript|length=1707bp|location=Sequence derived from alignment at scaffold_167:47827..49533 (Clytia hemisphaerica)
tggtgctgtaagtcttactggcaggtagttacgtaaatacgaaggggcta
aattgttaataattccatagaagaatgtcattcttctagcaaagcgccCT
TTTAGGCATCTATCAAGCAATTTATCCTCAGTTAGTGCATTAAAGATTGG
CTTCAGCTCTTCCAAAAAAACAGAGGGCAATCTGTTGTTCTCGTGATAGT
TTTCTCGGTCCGACAAATACTTACACCACGACGCTTCATCTTTTGGGTAA
TTAGCATGTTGTTCGTCAAGCGTTTTGGTCTCATCAATAATCATATGCTT
GTAGATTGCCCAAATATCATTAACCATGATATCTTTATCCCCTGCATTGT
TACGAGTACATTGCCcataaaaattttggattttgtcGATGGATTTGTCG
GCCAGTCGCCCACCCCCGCCGATCCCTTTCAGTCAGCAAGCTTTTGACCC
CGCATATTCTTTTTATAGGTCCTCAACCTAGTGCCCATTCTTTTTTGGAC
ATGTCCAACACATTCTTCCTTGTTTAAATTGTAACCATCACCATACACTT
CCTCACATGCTTCCTTTACAGAGCCAAAGCATGAGCTATCACCATCACCA
ACAAACACAGTGTATTTTAGATTATACTTATCGATTGACCGCAGAAAAAT
TTCCTTCGCGCCAGAGGTCTCCATGAAATCAGAGCTTCCCTTGTGATTAA
TTTCACATTCCTTTGCATGTGTTTcataccatttttggaaatCACTTTCT
GTCATAGAACTCTGTCGTTTTGAACAGGAATGACAAAATAAACTTTTGAC
CTCATAGTCCAGAACTTCTCCGGTCTCGACGCTGATGACAAAAACAACCC
CGATTTTTGATGAATGACCCCTACGCTGCCACGTTCCATCTACGATGACA
GACACATCAGCTATGATCTCCCCATTGTCTAATACAGTTATGTTTTTCGG
ATTTTCGGTTAATGTTTTGGTTAGTAAATTATCCGCGGCAtccttcaaaa
ctttggaagtGCGCTGTGAAATGGTTTCAAGTAGATTGTTTTGGATATGT
GTGAAAGGTTTTGATGTTACGGGGGCTGGAAGTTCCATTAAGTTGTTAAA
CTTTGAAAGGCCTGCTCTTCCAATTTGTTGAGCTGCATACACTGATCTGA
TGTTCACATCATACGCAAGAATTTTATTTGACGAGCGTGGACTGGTTTTG
AATTCGGATATGTGCGAACAGCTTTTACAGAACAATGTCAATGTTTCGCA
CATGCCTCTGCGAAGATTTTCACTTTCTTGAATCTCAATAGAGGAAGAAG
CCTTGCAGTTTTTGCAAACAGTAAAATTATTAAAGGCTTTCATTAAAACT
TCTTCATCAATCAACTTGAATCCAACAGCGCGTTTCTTTGGATAAAGTTT
GCGAACACCGCGGCGTTCAGTTTGAGAGCGTGTTCTAATTAATCGTTTGT
GTTTATTCAGATAACCTTTTCTCAACTTTTCAGCACTCTTGTTTTTCAAT
GGCTTGTAGATCACTTTAGTCTTTTCTTGAGACAGCTTTTGGGAAAGTTT
TTCGGAGAACGTGGACAGCGGCATTGCTTGCGGTACTGGAGGATGGAAAA
TTGGAATCGTCGGTAACAGATGGGGTAGTACCGGGTGcggcagaaaaaac
tttggacgtttggcgagccactgaggccgaacaaagtcttgtttagactc
aaaacca Coding sequence (CDS) from alignment at scaffold_167:47827..49533 >TCONS_00050141 ID=TCONS_00050141|Name=TCONS_00050141|organism=Clytia hemisphaerica|type=CDS|length=1278bp|location=Sequence derived from alignment at scaffold_167:47827..49533 (Clytia hemisphaerica)
TCAGTCAGCAAGCTTTTGACCCCGCATATTCTTTTTATAGGTCCTCAACC
TAGTGCCCATTCTTTTTTGGACATGTCCAACACATTCTTCCTTGTTTAAA
TTGTAACCATCACCATACACTTCCTCACATGCTTCCTTTACAGAGCCAAA
GCATGAGCTATCACCATCACCAACAAACACAGTGTATTTTAGATTATACT
TATCGATTGACCGCAGAAAAATTTCCTTCGCGCCAGAGGTCTCCATGAAA
TCAGAGCTTCCCTTGTGATTAATTTCACATTCCTTTGCATGTGTTTcata
ccatttttggaaatCACTTTCTGTCATAGAACTCTGTCGTTTTGAACAGG
AATGACAAAATAAACTTTTGACCTCATAGTCCAGAACTTCTCCGGTCTCG
ACGCTGATGACAAAAACAACCCCGATTTTTGATGAATGACCCCTACGCTG
CCACGTTCCATCTACGATGACAGACACATCAGCTATGATCTCCCCATTGT
CTAATACAGTTATGTTTTTCGGATTTTCGGTTAATGTTTTGGTTAGTAAA
TTATCCGCGGCAtccttcaaaactttggaagtGCGCTGTGAAATGGTTTC
AAGTAGATTGTTTTGGATATGTGTGAAAGGTTTTGATGTTACGGGGGCTG
GAAGTTCCATTAAGTTGTTAAACTTTGAAAGGCCTGCTCTTCCAATTTGT
TGAGCTGCATACACTGATCTGATGTTCACATCATACGCAAGAATTTTATT
TGACGAGCGTGGACTGGTTTTGAATTCGGATATGTGCGAACAGCTTTTAC
AGAACAATGTCAATGTTTCGCACATGCCTCTGCGAAGATTTTCACTTTCT
TGAATCTCAATAGAGGAAGAAGCCTTGCAGTTTTTGCAAACAGTAAAATT
ATTAAAGGCTTTCATTAAAACTTCTTCATCAATCAACTTGAATCCAACAG
CGCGTTTCTTTGGATAAAGTTTGCGAACACCGCGGCGTTCAGTTTGAGAG
CGTGTTCTAATTAATCGTTTGTGTTTATTCAGATAACCTTTTCTCAACTT
TTCAGCACTCTTGTTTTTCAATGGCTTGTAGATCACTTTAGTCTTTTCTT
GAGACAGCTTTTGGGAAAGTTTTTCGGAGAACGTGGACAGCGGCATTGCT
TGCGGTACTGGAGGATGGAAAATTGGAATCGTCGGTAACAGATGGGGTAG
TACCGGGTGcggcagaaaaaactttggacgtttggcgagccactgaggcc
gaacaaagtcttgtttagactcaaaacc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050141-exon-scaffold_167-1491911889:47827..49533 | TCONS_00050141-exon-scaffold_167-1491911889:47827..49533 | Clytia hemisphaerica | exon |
| TCONS_00050141-exon-scaffold_167-1510915933:47827..49533 | TCONS_00050141-exon-scaffold_167-1510915933:47827..49533 | Clytia hemisphaerica | exon |
| TCONS_00050141-exon-scaffold_167-1575043694:47827..49533 | TCONS_00050141-exon-scaffold_167-1575043694:47827..49533 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:47827..49533 . |
Blast
The following BLAST results are available for this feature:
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