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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050127 ID=TCONS_00050127|Name=TCONS_00050127|organism=Clytia hemisphaerica|type=transcript|length=854bp
aggattatattttgcgaatttcgcgaatccacaggtttttaaaattttcg
cggggattatatttcgcgaatttcggaaaaactcgcgaaatataatcccc
gccagggggggtcatgcagttattatataaacactatgacaattactacc
gtggtggtatataaaccaaaatttgggaaaacagttactccaNGGTACCA
TACTTTTTGGGATGTCTGTGCTTGAAATAATTGAGAAGATCATCTTCAGA
ACAGTTCATTTTTGGAAGATTGGCAATGAAGAGTTTTTTGGTTCTTTCAT
GGGCTCCAGCATTATTGTTATTCTTTGGGACAGCTCTATTCACATCCAAT
TGTCTACCTTTGAAGTTCAATTCCTCCCTTTTCAATAAGACCTCATCAAC
AAGATCTGATGTTTCAAAGGTCAGAAATCCAAAATGACTCTTCTTATCAG
TGtcttttttaataataacaGTGTCTGTAACAGATCCAATTGTCTACCTT
TGAAGTTCAATTCCTCCCTTTTCAATAAGACCTCATCAACAAGATCTGAT
GTTTCAAAGGTCAGAAATCCAAAATGACTCTTCTTATCAGTGtctttttt
aataataacaGTGTCTGTAACAGATCCGCCACACTTTTCTTCAAAGTATT
GTTTTAGTTCATCTTCAGTACTTTCTGTTGAAATTCCaccaacaaaaact
tttttcatttccTCTTCATCAAGAATAGGGTCTCTAATAAATTCTGTGAT
TTCTTCTTCCTCAGTTTCTGGCTTTTCCTCTTCTGTTGATTCAACCTTTT
CAGTGGTTGGTTCTTCAGTTTGTGGGACTTGTTCTTCTGTATCAGCCATT
Ctat Run BLAST on NCBI transcript from alignment at scaffold_167:1744868..1746243- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050127 ID=TCONS_00050127|Name=TCONS_00050127|organism=Clytia hemisphaerica|type=transcript|length=1376bp|location=Sequence derived from alignment at scaffold_167:1744868..1746243- (Clytia hemisphaerica)
AGGATTATATTTTGCGAATTTCGCGAATCCACAGGTTTTTAAAATTTTCG
CGGGGATTATATTTCGCGAATTTCGGAAAAACTCGCGAAATATAATCCCC
GCCAGGGGGGGTCATGCAGTTATTATATAAACACTATGACAATTACTACC
GTGGTGGTATATAAACCAAAATTTGGGAAAACAGTTACTCCANGGTACCA
TACTTTTTGGGATGTCTGTGCTTGAAATAATTGAGAAGATCATCTTCAGA
ACAGTTCATTTTTGGAAGATTGGCAATGAAGAGTTTTTTGGTTCTTTCAT
GGGCTCCAGCATTATTGTTATTCTTTGGGACAGCTCTATTCACATCCAAT
TGTCTACCTTTGAAGTTCAATTCCTCCCTTTTCAATAAGACCTCATCAAC
AAGATCTGATGTTTCAAAGGTCAGAAATCCAAAATGACTCTTCTTATCAG
TGTCTTTTTTAATAATAACAGTGTCTGTAACAGATCCGCCACACTTTTCT
TCAAAGTATTGTTTTAGTTCATCTTCAGTACTTTCTGTTGAAATTCCACC
AACAAAAACTTTTTTCATTTCCTCTTCATCAAGAATAGGGTCTCTAATAA
ATTCTGTGATTTCTTCTTCCTCAGNAGGTTTTTGAAAATTCCGGAAGCAA
AAAAATTCAAATCATTTTTTTCAAAAGTAAAAAAAAAATCAAATTTTTTT
CTTCAATCAAGGCATGAAAGATATTTTAACAAACTTGGAAAATGATTGAG
ATATTTAACTCTTGAACGGCCGTTAATAAGACGTACCCAGCAAAATGGTA
TCAAAAATGAGGAATTCAGTGAAAAAATTGCCAAATTTGGCATTTTTGGG
GGTGGTATACACCAATTTTGAGGGTAAAATCAGTTAGTACANTTGAGAAG
ATCATCTTCAGAACAGTTCATTTTTGGAAGATTGGCAATGAAGAGTTTTT
TGGTTCTTTCATGGGCTCCAGCATTATTGTTATTCTTTGGGACAGCTCTA
TTCACATCCAATTGTCTACCTTTGAAGTTCAATTCCTCCCTTTTCAATAA
GACCTCATCAACAAGATCTGATGTTTCAAAGGTCAGAAATCCAAAATGAC
TCTTCTTATCAGTGTCTTTTTTAATAATAACAGTGTCTGTAACAGATCCG
CCACACTTTTCTTCAAAGTATTGTTTTAGTTCATCTTCAGTACTTTCTGT
TGAAATTCCACCAACAAAAACTTTTTTCATTTCCTCTTCATCAAGAATAG
GGTCTCTAATAAATTCTGTGATTTCTTCTTCCTCAGTTTCTGGCTTTTCC
TCTTCTGTTGATTCAACCTTTTCAGTGGTTGGTTCTTCAGTTTGTGGGAC
TTGTTCTTCTGTATCAGCCATTCTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050127-exon-scaffold_167-1575043694:1745761..1746243 | TCONS_00050127-exon-scaffold_167-1575043694:1745761..1746243 | Clytia hemisphaerica | exon |
| TCONS_00050127-exon-scaffold_167-1575043694:1744868..1745238 | TCONS_00050127-exon-scaffold_167-1575043694:1744868..1745238 | Clytia hemisphaerica | exon |
| TCONS_00050127-exon-scaffold_167-1510915933:1745761..1746243 | TCONS_00050127-exon-scaffold_167-1510915933:1745761..1746243 | Clytia hemisphaerica | exon |
| TCONS_00050127-exon-scaffold_167-1510915933:1744868..1745238 | TCONS_00050127-exon-scaffold_167-1510915933:1744868..1745238 | Clytia hemisphaerica | exon |
| TCONS_00050127-exon-scaffold_167-1491911889:1745761..1746243 | TCONS_00050127-exon-scaffold_167-1491911889:1745761..1746243 | Clytia hemisphaerica | exon |
| TCONS_00050127-exon-scaffold_167-1491911889:1744868..1745238 | TCONS_00050127-exon-scaffold_167-1491911889:1744868..1745238 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:1744868..1746243 - |
Blast
The following BLAST results are available for this feature:
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