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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050125 ID=TCONS_00050125|Name=TCONS_00050125|organism=Clytia hemisphaerica|type=transcript|length=4152bpRun BLAST on NCBI protein sequence of TCONS_00050125-protein >TCONS_00050125-protein ID=TCONS_00050125-protein|Name=TCONS_00050125-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1025bp MGKSKGRGRGRGRGRGETGAPSPQAPGNATNSDSPPKSASNGVGRGRGNKRun BLAST on NCBI transcript from alignment at scaffold_167:1718526..1732600- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00050125 ID=TCONS_00050125|Name=TCONS_00050125|organism=Clytia hemisphaerica|type=transcript|length=14075bp|location=Sequence derived from alignment at scaffold_167:1718526..1732600- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_167:1718526..1732600- >TCONS_00050125 ID=TCONS_00050125|Name=TCONS_00050125|organism=Clytia hemisphaerica|type=CDS|length=61560bp|location=Sequence derived from alignment at scaffold_167:1718526..1732600- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00050125 vs. Swiss-Prot (Human)
Match: AGO2 (Protein argonaute-2 OS=Homo sapiens GN=AGO2 PE=1 SV=3) HSP 1 Score: 711.064 bits (1834), Expect = 0.000e+0 Identity = 381/835 (45.63%), Postives = 528/835 (63.23%), Query Frame = 2
Query: 545 GINFNPREVMQLPLRPSHGKAGRKIQLNANFYELKIPTNAIIHHYDVVISDGKQEDKIPKPMARQLMQKFTRSNKKLF-RTQPVFDGRKNMYTKEPLDFQSSRKFEGITFQEEGDDRERTFSITLKWVNQLNLKYLQDAMEGKAQSVPQEIYQGLDMVLRYAATLCYVPVGSKFFT-SNGSVN-LGGGREMWPGYNLTVRPTGRWKLMLNIDTSASGFYRHISVLQYLNEILPRFDIRRGE--MMDRDRKAFERELKGLKIQITYMGKQKRKYRVNGLTKLGASKQTFTLDNNE----KVTVQSYFRKEKNVTLKYANLPCLHVGNPQKNVYIPMEVCEMVPGQRVMKKLTEDQTAIMIKNTAKKPEMRKAAIDRIVSDSNYAQDPYVKGFGIQVSQKMTTVDARVINPPDVQYSG--GKIMKPSGGAWNMKNIRVFQGANIQAWGMVVCNFFGRPFEEDSAWRFEEELIKKAQEMGINM-GRSVFYKVLNKFEDPTKVLSEGFATNKNLDLLVAVLPGKTPFYQCLKRMCETENGYVDAAADPRVQEILKNRGLSTQCIQIKNAIKCSPMTLAQLLLKVNAKMGGXXXXXXXXXKVTRPIRVFKEPVLFLGADVTHPGIGDKESPSIAAIVGSVDPVPSKYAVCVRVQKHRQEMIEDMKNVAKDLLKQFYINTKSKPCKIVMYRDGVSEGQFQQVLQHEMRAIQQACSELEKGYQPAITFIVVQKRHHARFFPMPGSRDVDRSGNCLPGTTIDSGVCHPTEYDYYQYSHAGIQGTSRPSHYHVLWDDNDFEPDELQSLSFMLCHLYVRCTRSVSIPAPAYYAHHVAFRAKDHLL 3013
G F P P RP G +GR I+L ANF+E+ IP I+HY++ I K ++ + + ++Q F ++F +PVFDGRKN+YT PL + +T EG DR F +++KWV+ ++L+ L DA+ G+ SVP E Q LD+V+R+ ++ Y PVG FFT S G N LGGGRE+W G++ +VRP+ WK+MLNID SA+ FY+ V++++ E+L I + + D R F +E+KGLK++IT+ G+ KRKYRV +T+ AS QTF L + TV YF+ + L+Y +LPCL VG QK+ Y+P+EVC +V GQR +KKLT++QT+ MI+ TA+ R+ I +++ +++ DPYV+ FGI V +MT V RV+ PP + Y G I P G W+M+N + G I+ W + C R E F E+L K +++ G+ + G+ F K + + T L L+V +LPGKTP Y +KR+ +T +L G++TQC+Q+KN + +P TL+ L LK+N K+GG+NN + RP VF++PV+FLGADVTHP GD + PSIAA+VGS+D P++Y VRVQ+HRQE+I+D+ + ++LL QFY +T+ KP +I+ YRDGVSEGQFQQVL HE+ AI++AC +LEK YQP ITFIVVQKRHH R F + V +SGN GTT+D+ + HPTE+D+Y SHAGIQGTSRPSHYHVLWDDN F DELQ L++ LCH YVRCTRSVSIPAPAYYAH VAFRA+ HL+
Sbjct: 20 GYAFKP------PPRPDFGTSGRTIKLQANFFEMDIP-KIDIYHYELDIKPEKCPRRVNREIVEHMVQHF---KTQIFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTLPGEGKDR--IFKVSIKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPS-LWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLVLRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILYGGRNKAIATPVQGVWDMRNKQFHTGIEIKVWA-IACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYAGLQLVVVILPGKTPVYAEVKRVGDT---------------VL---GMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQG---RP-PVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPNRYCATVRVQQHRQEIIQDLAAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNERVGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLV 818 The following BLAST results are available for this feature:
BLAST of TCONS_00050125 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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