TCONS_00050122 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050122
Unique NameTCONS_00050122
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3499

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050122 ID=TCONS_00050122|Name=TCONS_00050122|organism=Clytia hemisphaerica|type=transcript|length=3499bp
cgaaaacgtcgAAAATCGACCTATTAAATTTTTAGattaaaattggcaat
cgcaatagcctttacatgattaaaagcatttttcagtaatttaaacacat
aaatttcgAAACTGAAAGGCCGAAAGGGtttaaatcttcatcaaaatcac
ttcaatttacttttaccgaaattttcctccgatttttggtttttgattGG
ATAAAGTCTATTTAAGGCCGGATACATCNCAAATCTATATCAATGGCAAG
TTTTACACCACAAGAAATGGAATTTCTACAATCACATGGCAATGAGgttt
gtcgGAGTACATGGCTTGCATTATGGGAGTCAAGTGCCGCACCTGAACCA
GATTCTCGTGaagaacaaaaagtgaaagATTTCCTTGGGAAAAAATATGA
AAGGAAAATGTGGTACAGCAGTAAACCAAAGGCAAAAGCACAAGCAGCAG
AACCTGAAGCAAAACCGTTGAAAACATTGTTGGGTGAAAATTCCCCTCAA
GTTATTGTAGGCTCTAAACAAGAACAAAAGTCTGCATCTATAAAATTACC
ACAATCTGCTGCACCTACCCCTCAACAACCTGTGTTACACCAACCTGAGA
AGAAATCTAATTTCGACCTCCTTGGTGACCTGAGTGGTGACCCTTTTGCT
TCATCTGCTCCACAACCCACAGCAAGTAACTCTGCAGATGCTTTTGGAGT
GTTTGCACAGCCACCACCAGCTCAAAACCAACAAGCACAACAAGCGCCAC
TTTTTGATGCTTTCGGTACCTCttctacagctgcaccaacaacAAGTCAA
CCGACAGCAAACgcttcttttgatttctttgctTCTTCCGCTGGACCAGT
ATCGACAGCTTCCTCTTCTGCTACTGATTTCTTTGCCATGTCTTCGAATA
CAAGTCAACAACCAGCAGCATCCTCGTCTGCATTTGGAGTGACTTCTGAT
GCAGgTCTTTCAGTTGGAAACAACAGCGGTGGAGATAAATATGCTGCATT
CGCTGATCTAGGTACATCCTCCACATCAATATTCGAGAGTCAATCCTCCT
CAATATTTGGTAGCAGTAGTTTTGGATCCGCTCCAGTATCTTCCAGTACA
CAGTCAATTTTTAGCAACAATAACCCTATGAACAatacacaacaacaaca
atcaaGTAACAATATATTTGGAGCACAACCGACACAACAACCTTTTCAAC
AACAAGgacaaatgtcaaatttttcgCAACCGCAGGTGCCTCAACAGGCA
CAACAGAATCCGTTTATGACTTCGAATAATGCTCCTCAACAGCCAGCCCA
ACCACAAAAACCATTGAATCCGTTCCAAAATTTCTCGGCATCTGGCGGAA
GCACAATGTCACAAGCAGCACAGCTCGATAATTTTGGTTCCAGCATGGTG
AACAATCAGAACAACTCTTGGGGCACAACCGCCTCTAGTGCAAATAGCCA
ATCTTTCTCTAGTAACAATATGTTTTCAACTCAATTTAATGCTCAGACAT
CTAATACTGGGTTCAGTATGCAAGCAAACCAAAATGCATCAACACAGCCT
GTTTATTCCAATAACACAAATTACACTCAACCGCAACAACAACCCCAAAC
ACAACAACAACAGAACTTTGGTGGTAATATTTTccaacaacaacagcagc
agCAACCGATCAGTCAAAATAACATGTTTGGAAATTCACAACAAAATGCA
CAACAAGCTTTTAATGCAGGACAACAGTCAAATGGCTTTTCTTCACAACA
AagttttggcaattttggaGCACAACAACAGCAGTCTGCAGCACCTCAGA
AACCATTTGGTGGGGTGCAAATGCCAGGTTTTGGACAACAACCTTTTCCT
CAACagccacaacaacaacaaccacagcAACAAAATTTTGGAACCTGGGG
CCAACAACAGCAGGCCAttccacaacaacaacagccaGCAGTAAAATTAT
CCAATAACCCATTTATGTGATATGCAAATGgttacaaaatataaagaagA
AGTGGGCTATAGGTGATTCCAAAACAATACGATTTGGTGTTTCGCTACGT
TTCTGGCTGTATACCGTAACTTGTATTTGAATACCTGTAAGGGTATCAAA
AAGAAGTATTTGGTGGTCAGAAATATACATGATTCTAATGGATCATTAGA
ATTCGATTTTGGTGAACTCTGAACCCTTTTAGGATTGGGCTAAAAGGAGA
AGAATCAAAATTCATAACACTTCTTACTTTTTGAACTAGCAATGTTCTGA
TTATGTcttgatcaatttttttttccgattAGTGATTTGAGGAACTGAAG
GGTCATTATGATAAACTTCATGGTTTTTTTGCTTACAACTCTTTGTAGAA
TTCAAATTAGGAATAAGGCAGAGTACAAtaattttctataaaatttCCAT
ACTTTATATCGCGTTTTTATCGTTAAGACATTTTATTACTGGAGAGAGAA
ATGCTGATCTTTTTCTAGTCTAGTTCTGTTCTGTGATAGTATAATATTTA
TCAACTCATATCTTAGACTTTATAAAAAGTGCTGAAATATGATTGTTTAG
TTAGAAActattttttgcccaaatttctCTGTAAGTATAATATTGATgca
ttcaaaatatttcaactgtaaaaatttaattttttatacttctttttcct
ttttttttcaaatctaatAACATTTCTCTTTATGATTGTTTTCTTTATGA
CCAGAGTAGAGTCAATTAGAATACACTTCCATTGGAAAGGCTTTGGTTGC
AAGTTTTGATCAATTTTAAAAACGTCGATTGCACTATAAGGCcaaacaaa
aatctcttttgaaacCAGAATTATGACAAAAAGAAGGTATgcaattcttc
atttttttcacatgGCCTTCTTACAGCAACTTTACTTTGAGGAATAATTT
TCATAGTTTATCAGATTTTGGGAACGCTTTTGCGCGCTTTTGTTACAATG
GTTGTCAACGAGTCAATAATGTTCGATCAAATTTCTTGTAATACAGTAGT
TAAGTTTTTCAATTGGAAGATATTACTGCCTTGGTTCTCTTATAAGACAG
CAAATTATGACCTCTTTagcttttaaatgaaaaatatattagaaAGACAG
AAAAAGATTATATTATCAGAATTTATATTACTACTCTTCtgagaaaaata
tttggaaaaataatcaatacatgtttttcttttataagcataacgtttat
aagcatatgcaggctcagtttttggtacctaaacaatggctctattgttt
gagaacaatagaatgctaagcataatgcgagcctgatatagggacagaca
cttgcttataaaaaaaacatgtattacgAGAAGACAACAATATCTTTACA
ATTTGTAATTATTACTATTATAACCCTCttttgtttattattagtattac
ttAATGACATAATTATTATTTACGTGGttttatattttgttatcaTCTTA
ATTGTAAAGAATATGAGGAATAATAAAcgatttatttttttgagaaagg
Run BLAST on NCBI

protein sequence of TCONS_00050122-protein

>TCONS_00050122-protein ID=TCONS_00050122-protein|Name=TCONS_00050122-protein|organism=Clytia hemisphaerica|type=polypeptide|length=575bp
MASFTPQEMEFLQSHGNEVCRSTWLALWESSAAPEPDSREEQKVKDFLGK
KYERKMWYSSKPKAKAQAAEPEAKPLKTLLGENSPQVIVGSKQEQKSASI
KLPQSAAPTPQQPVLHQPEKKSNFDLLGDLSGDPFASSAPQPTASNSADA
FGVFAQPPPAQNQQAQQAPLFDAFGTSSTAAPTTSQPTANASFDFFASSA
GPVSTASSSATDFFAMSSNTSQQPAASSSAFGVTSDAGLSVGNNSGGDKY
AAFADLGTSSTSIFESQSSSIFGSSSFGSAPVSSSTQSIFSNNNPMNNTQ
QQQSSNNIFGAQPTQQPFQQQGQMSNFSQPQVPQQAQQNPFMTSNNAPQQ
PAQPQKPLNPFQNFSASGGSTMSQAAQLDNFGSSMVNNQNNSWGTTASSA
NSQSFSSNNMFSTQFNAQTSNTGFSMQANQNASTQPVYSNNTNYTQPQQQ
PQTQQQQNFGGNIFQQQQQQQPISQNNMFGNSQQNAQQAFNAGQQSNGFS
SQQSFGNFGAQQQQSAAPQKPFGGVQMPGFGQQPFPQQPQQQQPQQQNFG
TWGQQQQAIPQQQQPAVKLSNNPFM
Run BLAST on NCBI

transcript from alignment at scaffold_167:1664621..1669469-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050122 ID=TCONS_00050122|Name=TCONS_00050122|organism=Clytia hemisphaerica|type=transcript|length=4849bp|location=Sequence derived from alignment at scaffold_167:1664621..1669469- (Clytia hemisphaerica)
CGAAAACGTCGAAAATCGACCTATTAAATTTTTAGATTAAAATTGGCAAT
CGCAATAGCCTTTACATGATTAAAAGCATTTTTCAGTAATTTAAACACAT
AAATTTCGAAACTGAAAGGCCGAAAGGGTTTAAATCTTCATCAAAATCAC
TTCAATTTACTTTTACCGAAATTTTCCTCCGATTTTTGGTTTTTGATTGG
ATAAAGTCTATTTAAGGCCGGATACATCNCAAATCTATATCAATGGCAAG
TTTTACACCACAAGAAATGGAATTTCTACAATCACATGGCAATGAGGTTT
TACTAATTTTGTCTTTATTTTTCTAAACTTTTTTAAATCGTTTTTCTTTG
AATTGATGTCCCTATTTGCAACAAACCAAAATGATAAGAACTATTGATTT
TTTAATTGTGATTTGACAAATTTGATTTTTTATACAGCATTGCATCCTGA
TTAGTGTTTTCAATATTTTCTCTCTTCCATGTTCATTCAAGGTTTGTCGG
AGTACATGGCTTGCATTATGGGAGTCAAGTGCCGCACCTGAACCAGATTC
TCGTGAAGAACAAAAAGTGAAAGATTTCCTTGGGAAAAAATATGAAAGGA
AAATGTGGTACAGCAGTAAACCAAAGGCAAAAGCACAAGCAGCAGAACCT
GAAGCAAAACCGTTGAAAACATTGTTGGGTGAAAATTCCCCTCAAGTTAT
TGTAGGCTCTAAACAAGAACAAAAGTCTGTAAGTAAAACAATTGAGTTTT
GAGCTGAGTTGTTGTTTTTAAAAATTCTGAGTATAAAATTCCATAAAGTT
TAATTCAGCATGAAAAGTTATCCACAATAATAATAAAGTGATTATTTCAT
AATAATGAAATTAATTATCAAATATCATCTATACCAATACTGAAATATTC
CAGCATTCAATCATTTCTACTTATAGGCATCTATAAAATTACCACAATCT
GCTGCACCTACCCCTCAACAACCTGTGTTACACCAACCTGAGAAGAAATC
TAATTTCGACCTCCTTGGTGACCTGAGTGGTGACCCTTTTGCTTCATCTG
CTCCACAACCCACAGCAAGTAGTACGTAATGAAATTCCTTTTTAGAAACC
TGTAAACTTTGGTTCTTTAAATGCATTAATTTTGATTCTTTCATATTTTG
TGGAGTCTTATCCATTGATTTAAATTGTTTGAAGAAAATCAAAAGTCTAA
ATTTTCAATTTATCAATAAAAACCAACAAATAAAATGTTGAATATTTTCA
GACTCAGCAGATGCTTTTGGAGTGTTTGCACAGCCACCANTGTTGAATAT
TTTCAGACTCTGCAGATGCTTTTGGAGTGTTTGCACAGCCACCACCAGCT
CAAAACCAACAAGCACAACAAGCGCCACTTTTTGATGCTTTCGGTACCTC
TTCTACAGCTGCACCAACAACAAGTCAACCGACAGCAAACGCTTCTTTTG
ATTTCTTTGCTTCTTCCGCTGGACCAGTATCGACAGCTTCCTCTTCTGCT
ACTGATTTCTTTGCCATGTCTTCGAATACAAGTCAACAACCAGCAGCATC
CTCGTCTGCATTTGGAGTGACTTCTGATGCAGGTAATCTCATCGAATGCC
AGTAGTCTTTGAAATGGTAACAATGAACAATTTTGAAAATAATTGATTAC
AATCTCGTGCTCAATTAATTGTTTATAGCAGAAGTTCCCCTGCACAAGTG
CACATATTGTTTTAGACCCCCTAAAAGATACATTATCTTTCTTGATAATA
ATAAGGATACTACTATTTTATTTTATTTTGTAAGGTCTTTCAGTTGGAAA
CAACAGCGGTGGAGATAAATATNTTCTTGATAATAATAATATTGATACTA
CTATTTTTTCATTTTGTAAGGTCTTTCAGTTGGAAACAACAGCGGTGGAG
ATAAATATGCTGCATTCGCTGATCTAGGTACATCCTCCACATCAATATTC
GAGAGTCAATCCTCCTCAATATTTGGTAGCAGTAGTTTTGGATCCGCTCC
AGTATCTTCCAGTACACAGTCAATTTTTAGCAACAATAACCCTATGAACA
ATACACAACAACAACAATCAAGTAACAATATATTTGGAGCACAACCGACA
CAACAACCTTTTCAACAACAAGGACAAATGTCAAATTTTTCGCAACCGCA
GGTGCCTCAACAGGCACAACAGAATCCGTTTATGACTTCGAATAATGCTC
CTCAACAGCCAGCCCAACCACAAAAACCATTGAATCCGTTCCAAAATTTC
TCGGCATCTGGCGGAAGCACAATGTCACAAGCAGCACAGCTCGATAATTT
TGGTTCCAGCATGGTGAACAATCAGAACAACTCTTGGGGCACAACCGCCT
CTAGTGCAAATAGCCAATCTTTCTCTAGTAACAATATGTTTTCAACTCAA
TTTAATGCTCAGACATCTAATACTGGGTTCAGTATGCAAGCAAACCAAAA
TGCATCAACACAGCCTGTTTATTCCAATAACACAAATTACACTCAACCGC
AACAACAACCCCAAACACAACAACAACAGAACTTTGGTGGTAATATTTTC
CAACAACAACAGCAGCAGCAACCGATCAGTCAAAATAACATGTTTGGAAA
TTCACAACAAAATGCACAACAAGCTTTTAATGCAGGACAACAGTCAAATG
GCTTTTCTTCACAACAAAGTTTTGGCAATTTTGGAGCACAACAACAGCAG
TCTGCAGCACCTCAGAAACCATTTGGTGGGGTGCAAATGCCAGGTTTTGG
ACAACAACCTTTTCCTCAACAGCCACAACAACAACAACCACAGCAACAAA
ATTTTGGAACCTGGGGCCAACAACAGCAGGTACTCATTTTTTGAATAGTT
TTATCCAAGAAGTTCGACTCAAAGCCAGAAAATCCTTTAATTCCTTACGT
ATTTATTGACATGCTGACGTGACTTATTGTCCATTTAATTGAAATTGATT
TTTACAATTTCGAGGTTCCATTTATACCACTGTTTGTGGCAGAAAGTAAG
CACAGGTATTATGTATTTTGAACTAATTAGAAGATTCAACCAGTAGCATT
TTCAAGGGGTGTCGGAAAATTTGTGTAGGAGAGCGCAATTTTGTTACGAA
GTTATTATCTTTTAATGTTATGAAAAGATAGTTACTTTGTCATAAAAATC
TGCTCTCCTACGCAAATTTTCCGACACCCCTGAGAACCCTACTGTTCAAC
TAAAGCCAGACAATGACCACCCTAATGCCTTCATAATAAAGTTTCGTCAC
CATTCTTTTCCAGGCCATTCCACAACAACAACAGCCAGCAGTAAAATTAT
CCAATAACCCATTTATGTGATATGCAAATGGTTACAAAATATAAAGAAGA
AGTGGGCTATAGGTGATTCCAAAACAATACGATTTGGTGTTTCGCTACGT
TTCTGGCTGTATACCGTAACTTGTATTTGAATACCTGTAAGGGTATCAAA
AAGAAGTATTTGGTGGTCAGAAATATACATGATTCTAATGGATCATTAGA
ATTCGATTTTGGTGAACTCTGAACCCTTTTAGGATTGGGCTAAAAGGAGA
AGAATCAAAATTCATAACACTTCTTACTTTTTGAACTAGCAATGTTCTGA
TTATGTCTTGATCAATTTTTTTTTCCGATTAGTGATTTGAGGAACTGAAG
GGTCATTATGATAAACTTCATGGTTTTTTTGCTTACAACTCTTTGTAGAA
TTCAAATTAGGAATAAGGCAGAGTACAATAATTTTCTATAAAATTTCCAT
ACTTTATATCGCGTTTTTATCGTTAAGACATTTTATTACTGGAGAGAGAA
ATGCTGATCTTTTTCTAGTCTAGTTCTGTTCTGTGATAGTATAATATTTA
TCAACTCATATCTTAGACTTTATAAAAAGTGCTGAAATATGATTGTTTAG
TTAGAAACTATTTTTTGCCCAAATTTCTCTGTAAGTATAATATTGATGCA
TTCAAAATATTTCAACTGTAAAAATTTAATTTTTTATACTTCTTTTTCCT
TTTTTTTTCAAATCTAATAACATTTCTCTTTATGATTGTTTTCTTTATGA
CCAGAGTAGAGTCAATTAGAATACACTTCCATTGGAAAGGCTTTGGTTGC
AAGTTTTGATCAATTTTAAAAACGTCGATTGCACTATAAGGCCAAACAAA
AATCTCTTTTGAAACCAGAATTATGACAAAAAGAAGGTATGCAATTCTTC
ATTTTTTTCACATGGCCTTCTTACAGCAACTTTACTTTGAGGAATAATTT
TCATAGTTTATCAGATTTTGGGAACGCTTTTGCGCGCTTTTGTTACAATG
GTTGTCAACGAGTCAATAATGTTCGATCAAATTTCTTGTAATACAGTAGT
TAAGTTTTTCAATTGGAAGATATTACTGCCTTGGTTCTCTTATAAGACAG
CAAATTATGACCTCTTTAGCTTTTAAATGAAAAATATATTAGAAAGACAG
AAAAAGATTATATTATCAGAATTTATATTACTACTCTTCTGAGAAAAATA
TTTGGAAAAATAATCAATACATGTTTTTCTTTTATAAGCATAACGTTTAT
AAGCATATGCAGGCTCAGTTTTTGGTACCTAAACAATGGCTCTATTGTTT
GAGAACAATAGAATGCTAAGCATAATGCGAGCCTGATATAGGGACAGACA
CTTGCTTATAAAAAAAACATGTATTACGAGAAGACAACAATATCTTTACA
ATTTGTAATTATTACTATTATAACCCTCTTTTGTTTATTATTAGTATTAC
TTAATGACATAATTATTATTTACGTGGTTTTATATTTTGTTATCATCTTA
ATTGTAAAGAATATGAGGAATAATAAACGATTTATTTTTTTGAGAAAGG

Coding sequence (CDS) from alignment at scaffold_167:1664621..1669469-

>TCONS_00050122 ID=TCONS_00050122|Name=TCONS_00050122|organism=Clytia hemisphaerica|type=CDS|length=10368bp|location=Sequence derived from alignment at scaffold_167:1664621..1669469- (Clytia hemisphaerica)
GCCATTCCACAACAACAACAGCCAGCAGTAAAATTATCCAATAACCCATT
TATGTGAGTCTTTCAGTTGGAAACAACAGCGGTGGAGATAAATATGCTGC
ATTCGCTGATCTAGGTACATCCTCCACATCAATATTCGAGAGTCAATCCT
CCTCAATATTTGGTAGCAGTAGTTTTGGATCCGCTCCAGTATCTTCCAGT
ACACAGTCAATTTTTAGCAACAATAACCCTATGAACAATACACAACAACA
ACAATCAAGTAACAATATATTTGGAGCACAACCGACACAACAACCTTTTC
AACAACAAGGACAAATGTCAAATTTTTCGCAACCGCAGGTGCCTCAACAG
GCACAACAGAATCCGTTTATGACTTCGAATAATGCTCCTCAACAGCCAGC
CCAACCACAAAAACCATTGAATCCGTTCCAAAATTTCTCGGCATCTGGCG
GAAGCACAATGTCACAAGCAGCACAGCTCGATAATTTTGGTTCCAGCATG
GTGAACAATCAGAACAACTCTTGGGGCACAACCGCCTCTAGTGCAAATAG
CCAATCTTTCTCTAGTAACAATATGTTTTCAACTCAATTTAATGCTCAGA
CATCTAATACTGGGTTCAGTATGCAAGCAAACCAAAATGCATCAACACAG
CCTGTTTATTCCAATAACACAAATTACACTCAACCGCAACAACAACCCCA
AACACAACAACAACAGAACTTTGGTGGTAATATTTTCCAACAACAACAGC
AGCAGCAACCGATCAGTCAAAATAACATGTTTGGAAATTCACAACAAAAT
GCACAACAAGCTTTTAATGCAGGACAACAGTCAAATGGCTTTTCTTCACA
ACAAAGTTTTGGCAATTTTGGAGCACAACAACAGCAGTCTGCAGCACCTC
AGAAACCATTTGGTGGGGTGCAAATGCCAGGTTTTGGACAACAACCTTTT
CCTCAACAGCCACAACAACAACAACCACAGCAACAAAATTTTGGAACCTG
GGGCCAACAACAGCAGACTCTGCAGATGCTTTTGGAGTGTTTGCACAGCC
ACCACCAGCTCAAAACCAACAAGCACAACAAGCGCCACTTTTTGATGCTT
TCGGTACCTCTTCTACAGCTGCACCAACAACAAGTCAACCGACAGCAAAC
GCTTCTTTTGATTTCTTTGCTTCTTCCGCTGGACCAGTATCGACAGCTTC
CTCTTCTGCTACTGATTTCTTTGCCATGTCTTCGAATACAAGTCAACAAC
CAGCAGCATCCTCGTCTGCATTTGGAGTGACTTCTGATGCAGGCATCTAT
AAAATTACCACAATCTGCTGCACCTACCCCTCAACAACCTGTGTTACACC
AACCTGAGAAGAAATCTAATTTCGACCTCCTTGGTGACCTGAGTGGTGAC
CCTTTTGCTTCATCTGCTCCACAACCCACAGCAAGTAGTTTGTCGGAGTA
CATGGCTTGCATTATGGGAGTCAAGTGCCGCACCTGAACCAGATTCTCGT
GAAGAACAAAAAGTGAAAGATTTCCTTGGGAAAAAATATGAAAGGAAAAT
GTGGTACAGCAGTAAACCAAAGGCAAAAGCACAAGCAGCAGAACCTGAAG
CAAAACCGTTGAAAACATTGTTGGGTGAAAATTCCCCTCAAGTTATTGTA
GGCTCTAAACAAGAACAAAAGTCTATGGCAAGTTTTACACCACAAGAAAT
GGAATTTCTACAATCACATGGCAATGAGGCCATTCCACAACAACAACAGC
CAGCAGTAAAATTATCCAATAACCCATTTATGTGAGTCTTTCAGTTGGAA
ACAACAGCGGTGGAGATAAATATGCTGCATTCGCTGATCTAGGTACATCC
TCCACATCAATATTCGAGAGTCAATCCTCCTCAATATTTGGTAGCAGTAG
TTTTGGATCCGCTCCAGTATCTTCCAGTACACAGTCAATTTTTAGCAACA
ATAACCCTATGAACAATACACAACAACAACAATCAAGTAACAATATATTT
GGAGCACAACCGACACAACAACCTTTTCAACAACAAGGACAAATGTCAAA
TTTTTCGCAACCGCAGGTGCCTCAACAGGCACAACAGAATCCGTTTATGA
CTTCGAATAATGCTCCTCAACAGCCAGCCCAACCACAAAAACCATTGAAT
CCGTTCCAAAATTTCTCGGCATCTGGCGGAAGCACAATGTCACAAGCAGC
ACAGCTCGATAATTTTGGTTCCAGCATGGTGAACAATCAGAACAACTCTT
GGGGCACAACCGCCTCTAGTGCAAATAGCCAATCTTTCTCTAGTAACAAT
ATGTTTTCAACTCAATTTAATGCTCAGACATCTAATACTGGGTTCAGTAT
GCAAGCAAACCAAAATGCATCAACACAGCCTGTTTATTCCAATAACACAA
ATTACACTCAACCGCAACAACAACCCCAAACACAACAACAACAGAACTTT
GGTGGTAATATTTTCCAACAACAACAGCAGCAGCAACCGATCAGTCAAAA
TAACATGTTTGGAAATTCACAACAAAATGCACAACAAGCTTTTAATGCAG
GACAACAGTCAAATGGCTTTTCTTCACAACAAAGTTTTGGCAATTTTGGA
GCACAACAACAGCAGTCTGCAGCACCTCAGAAACCATTTGGTGGGGTGCA
AATGCCAGGTTTTGGACAACAACCTTTTCCTCAACAGCCACAACAACAAC
AACCACAGCAACAAAATTTTGGAACCTGGGGCCAACAACAGCAGACTCTG
CAGATGCTTTTGGAGTGTTTGCACAGCCACCACCAGCTCAAAACCAACAA
GCACAACAAGCGCCACTTTTTGATGCTTTCGGTACCTCTTCTACAGCTGC
ACCAACAACAAGTCAACCGACAGCAAACGCTTCTTTTGATTTCTTTGCTT
CTTCCGCTGGACCAGTATCGACAGCTTCCTCTTCTGCTACTGATTTCTTT
GCCATGTCTTCGAATACAAGTCAACAACCAGCAGCATCCTCGTCTGCATT
TGGAGTGACTTCTGATGCAGGCATCTATAAAATTACCACAATCTGCTGCA
CCTACCCCTCAACAACCTGTGTTACACCAACCTGAGAAGAAATCTAATTT
CGACCTCCTTGGTGACCTGAGTGGTGACCCTTTTGCTTCATCTGCTCCAC
AACCCACAGCAAGTAGTTTGTCGGAGTACATGGCTTGCATTATGGGAGTC
AAGTGCCGCACCTGAACCAGATTCTCGTGAAGAACAAAAAGTGAAAGATT
TCCTTGGGAAAAAATATGAAAGGAAAATGTGGTACAGCAGTAAACCAAAG
GCAAAAGCACAAGCAGCAGAACCTGAAGCAAAACCGTTGAAAACATTGTT
GGGTGAAAATTCCCCTCAAGTTATTGTAGGCTCTAAACAAGAACAAAAGT
CTATGGCAAGTTTTACACCACAAGAAATGGAATTTCTACAATCACATGGC
AATGAGGCCATTCCACAACAACAACAGCCAGCAGTAAAATTATCCAATAA
CCCATTTATGTGAGTCTTTCAGTTGGAAACAACAGCGGTGGAGATAAATA
TGCTGCATTCGCTGATCTAGGTACATCCTCCACATCAATATTCGAGAGTC
AATCCTCCTCAATATTTGGTAGCAGTAGTTTTGGATCCGCTCCAGTATCT
TCCAGTACACAGTCAATTTTTAGCAACAATAACCCTATGAACAATACACA
ACAACAACAATCAAGTAACAATATATTTGGAGCACAACCGACACAACAAC
CTTTTCAACAACAAGGACAAATGTCAAATTTTTCGCAACCGCAGGTGCCT
CAACAGGCACAACAGAATCCGTTTATGACTTCGAATAATGCTCCTCAACA
GCCAGCCCAACCACAAAAACCATTGAATCCGTTCCAAAATTTCTCGGCAT
CTGGCGGAAGCACAATGTCACAAGCAGCACAGCTCGATAATTTTGGTTCC
AGCATGGTGAACAATCAGAACAACTCTTGGGGCACAACCGCCTCTAGTGC
AAATAGCCAATCTTTCTCTAGTAACAATATGTTTTCAACTCAATTTAATG
CTCAGACATCTAATACTGGGTTCAGTATGCAAGCAAACCAAAATGCATCA
ACACAGCCTGTTTATTCCAATAACACAAATTACACTCAACCGCAACAACA
ACCCCAAACACAACAACAACAGAACTTTGGTGGTAATATTTTCCAACAAC
AACAGCAGCAGCAACCGATCAGTCAAAATAACATGTTTGGAAATTCACAA
CAAAATGCACAACAAGCTTTTAATGCAGGACAACAGTCAAATGGCTTTTC
TTCACAACAAAGTTTTGGCAATTTTGGAGCACAACAACAGCAGTCTGCAG
CACCTCAGAAACCATTTGGTGGGGTGCAAATGCCAGGTTTTGGACAACAA
CCTTTTCCTCAACAGCCACAACAACAACAACCACAGCAACAAAATTTTGG
AACCTGGGGCCAACAACAGCAGACTCTGCAGATGCTTTTGGAGTGTTTGC
ACAGCCACCACCAGCTCAAAACCAACAAGCACAACAAGCGCCACTTTTTG
ATGCTTTCGGTACCTCTTCTACAGCTGCACCAACAACAAGTCAACCGACA
GCAAACGCTTCTTTTGATTTCTTTGCTTCTTCCGCTGGACCAGTATCGAC
AGCTTCCTCTTCTGCTACTGATTTCTTTGCCATGTCTTCGAATACAAGTC
AACAACCAGCAGCATCCTCGTCTGCATTTGGAGTGACTTCTGATGCAGGC
ATCTATAAAATTACCACAATCTGCTGCACCTACCCCTCAACAACCTGTGT
TACACCAACCTGAGAAGAAATCTAATTTCGACCTCCTTGGTGACCTGAGT
GGTGACCCTTTTGCTTCATCTGCTCCACAACCCACAGCAAGTAGTTTGTC
GGAGTACATGGCTTGCATTATGGGAGTCAAGTGCCGCACCTGAACCAGAT
TCTCGTGAAGAACAAAAAGTGAAAGATTTCCTTGGGAAAAAATATGAAAG
GAAAATGTGGTACAGCAGTAAACCAAAGGCAAAAGCACAAGCAGCAGAAC
CTGAAGCAAAACCGTTGAAAACATTGTTGGGTGAAAATTCCCCTCAAGTT
ATTGTAGGCTCTAAACAAGAACAAAAGTCTATGGCAAGTTTTACACCACA
AGAAATGGAATTTCTACAATCACATGGCAATGAGGCCATTCCACAACAAC
AACAGCCAGCAGTAAAATTATCCAATAACCCATTTATGTGAGTCTTTCAG
TTGGAAACAACAGCGGTGGAGATAAATATGCTGCATTCGCTGATCTAGGT
ACATCCTCCACATCAATATTCGAGAGTCAATCCTCCTCAATATTTGGTAG
CAGTAGTTTTGGATCCGCTCCAGTATCTTCCAGTACACAGTCAATTTTTA
GCAACAATAACCCTATGAACAATACACAACAACAACAATCAAGTAACAAT
ATATTTGGAGCACAACCGACACAACAACCTTTTCAACAACAAGGACAAAT
GTCAAATTTTTCGCAACCGCAGGTGCCTCAACAGGCACAACAGAATCCGT
TTATGACTTCGAATAATGCTCCTCAACAGCCAGCCCAACCACAAAAACCA
TTGAATCCGTTCCAAAATTTCTCGGCATCTGGCGGAAGCACAATGTCACA
AGCAGCACAGCTCGATAATTTTGGTTCCAGCATGGTGAACAATCAGAACA
ACTCTTGGGGCACAACCGCCTCTAGTGCAAATAGCCAATCTTTCTCTAGT
AACAATATGTTTTCAACTCAATTTAATGCTCAGACATCTAATACTGGGTT
CAGTATGCAAGCAAACCAAAATGCATCAACACAGCCTGTTTATTCCAATA
ACACAAATTACACTCAACCGCAACAACAACCCCAAACACAACAACAACAG
AACTTTGGTGGTAATATTTTCCAACAACAACAGCAGCAGCAACCGATCAG
TCAAAATAACATGTTTGGAAATTCACAACAAAATGCACAACAAGCTTTTA
ATGCAGGACAACAGTCAAATGGCTTTTCTTCACAACAAAGTTTTGGCAAT
TTTGGAGCACAACAACAGCAGTCTGCAGCACCTCAGAAACCATTTGGTGG
GGTGCAAATGCCAGGTTTTGGACAACAACCTTTTCCTCAACAGCCACAAC
AACAACAACCACAGCAACAAAATTTTGGAACCTGGGGCCAACAACAGCAG
ACTCTGCAGATGCTTTTGGAGTGTTTGCACAGCCACCACCAGCTCAAAAC
CAACAAGCACAACAAGCGCCACTTTTTGATGCTTTCGGTACCTCTTCTAC
AGCTGCACCAACAACAAGTCAACCGACAGCAAACGCTTCTTTTGATTTCT
TTGCTTCTTCCGCTGGACCAGTATCGACAGCTTCCTCTTCTGCTACTGAT
TTCTTTGCCATGTCTTCGAATACAAGTCAACAACCAGCAGCATCCTCGTC
TGCATTTGGAGTGACTTCTGATGCAGGCATCTATAAAATTACCACAATCT
GCTGCACCTACCCCTCAACAACCTGTGTTACACCAACCTGAGAAGAAATC
TAATTTCGACCTCCTTGGTGACCTGAGTGGTGACCCTTTTGCTTCATCTG
CTCCACAACCCACAGCAAGTAGTTTGTCGGAGTACATGGCTTGCATTATG
GGAGTCAAGTGCCGCACCTGAACCAGATTCTCGTGAAGAACAAAAAGTGA
AAGATTTCCTTGGGAAAAAATATGAAAGGAAAATGTGGTACAGCAGTAAA
CCAAAGGCAAAAGCACAAGCAGCAGAACCTGAAGCAAAACCGTTGAAAAC
ATTGTTGGGTGAAAATTCCCCTCAAGTTATTGTAGGCTCTAAACAAGAAC
AAAAGTCTATGGCAAGTTTTACACCACAAGAAATGGAATTTCTACAATCA
CATGGCAATGAGGCCATTCCACAACAACAACAGCCAGCAGTAAAATTATC
CAATAACCCATTTATGTGAGTCTTTCAGTTGGAAACAACAGCGGTGGAGA
TAAATATGCTGCATTCGCTGATCTAGGTACATCCTCCACATCAATATTCG
AGAGTCAATCCTCCTCAATATTTGGTAGCAGTAGTTTTGGATCCGCTCCA
GTATCTTCCAGTACACAGTCAATTTTTAGCAACAATAACCCTATGAACAA
TACACAACAACAACAATCAAGTAACAATATATTTGGAGCACAACCGACAC
AACAACCTTTTCAACAACAAGGACAAATGTCAAATTTTTCGCAACCGCAG
GTGCCTCAACAGGCACAACAGAATCCGTTTATGACTTCGAATAATGCTCC
TCAACAGCCAGCCCAACCACAAAAACCATTGAATCCGTTCCAAAATTTCT
CGGCATCTGGCGGAAGCACAATGTCACAAGCAGCACAGCTCGATAATTTT
GGTTCCAGCATGGTGAACAATCAGAACAACTCTTGGGGCACAACCGCCTC
TAGTGCAAATAGCCAATCTTTCTCTAGTAACAATATGTTTTCAACTCAAT
TTAATGCTCAGACATCTAATACTGGGTTCAGTATGCAAGCAAACCAAAAT
GCATCAACACAGCCTGTTTATTCCAATAACACAAATTACACTCAACCGCA
ACAACAACCCCAAACACAACAACAACAGAACTTTGGTGGTAATATTTTCC
AACAACAACAGCAGCAGCAACCGATCAGTCAAAATAACATGTTTGGAAAT
TCACAACAAAATGCACAACAAGCTTTTAATGCAGGACAACAGTCAAATGG
CTTTTCTTCACAACAAAGTTTTGGCAATTTTGGAGCACAACAACAGCAGT
CTGCAGCACCTCAGAAACCATTTGGTGGGGTGCAAATGCCAGGTTTTGGA
CAACAACCTTTTCCTCAACAGCCACAACAACAACAACCACAGCAACAAAA
TTTTGGAACCTGGGGCCAACAACAGCAGACTCTGCAGATGCTTTTGGAGT
GTTTGCACAGCCACCACCAGCTCAAAACCAACAAGCACAACAAGCGCCAC
TTTTTGATGCTTTCGGTACCTCTTCTACAGCTGCACCAACAACAAGTCAA
CCGACAGCAAACGCTTCTTTTGATTTCTTTGCTTCTTCCGCTGGACCAGT
ATCGACAGCTTCCTCTTCTGCTACTGATTTCTTTGCCATGTCTTCGAATA
CAAGTCAACAACCAGCAGCATCCTCGTCTGCATTTGGAGTGACTTCTGAT
GCAGGCATCTATAAAATTACCACAATCTGCTGCACCTACCCCTCAACAAC
CTGTGTTACACCAACCTGAGAAGAAATCTAATTTCGACCTCCTTGGTGAC
CTGAGTGGTGACCCTTTTGCTTCATCTGCTCCACAACCCACAGCAAGTAG
TTTGTCGGAGTACATGGCTTGCATTATGGGAGTCAAGTGCCGCACCTGAA
CCAGATTCTCGTGAAGAACAAAAAGTGAAAGATTTCCTTGGGAAAAAATA
TGAAAGGAAAATGTGGTACAGCAGTAAACCAAAGGCAAAAGCACAAGCAG
CAGAACCTGAAGCAAAACCGTTGAAAACATTGTTGGGTGAAAATTCCCCT
CAAGTTATTGTAGGCTCTAAACAAGAACAAAAGTCTATGGCAAGTTTTAC
ACCACAAGAAATGGAATTTCTACAATCACATGGCAATGAGGCCATTCCAC
AACAACAACAGCCAGCAGTAAAATTATCCAATAACCCATTTATGTGAGTC
TTTCAGTTGGAAACAACAGCGGTGGAGATAAATATGCTGCATTCGCTGAT
CTAGGTACATCCTCCACATCAATATTCGAGAGTCAATCCTCCTCAATATT
TGGTAGCAGTAGTTTTGGATCCGCTCCAGTATCTTCCAGTACACAGTCAA
TTTTTAGCAACAATAACCCTATGAACAATACACAACAACAACAATCAAGT
AACAATATATTTGGAGCACAACCGACACAACAACCTTTTCAACAACAAGG
ACAAATGTCAAATTTTTCGCAACCGCAGGTGCCTCAACAGGCACAACAGA
ATCCGTTTATGACTTCGAATAATGCTCCTCAACAGCCAGCCCAACCACAA
AAACCATTGAATCCGTTCCAAAATTTCTCGGCATCTGGCGGAAGCACAAT
GTCACAAGCAGCACAGCTCGATAATTTTGGTTCCAGCATGGTGAACAATC
AGAACAACTCTTGGGGCACAACCGCCTCTAGTGCAAATAGCCAATCTTTC
TCTAGTAACAATATGTTTTCAACTCAATTTAATGCTCAGACATCTAATAC
TGGGTTCAGTATGCAAGCAAACCAAAATGCATCAACACAGCCTGTTTATT
CCAATAACACAAATTACACTCAACCGCAACAACAACCCCAAACACAACAA
CAACAGAACTTTGGTGGTAATATTTTCCAACAACAACAGCAGCAGCAACC
GATCAGTCAAAATAACATGTTTGGAAATTCACAACAAAATGCACAACAAG
CTTTTAATGCAGGACAACAGTCAAATGGCTTTTCTTCACAACAAAGTTTT
GGCAATTTTGGAGCACAACAACAGCAGTCTGCAGCACCTCAGAAACCATT
TGGTGGGGTGCAAATGCCAGGTTTTGGACAACAACCTTTTCCTCAACAGC
CACAACAACAACAACCACAGCAACAAAATTTTGGAACCTGGGGCCAACAA
CAGCAGACTCTGCAGATGCTTTTGGAGTGTTTGCACAGCCACCACCAGCT
CAAAACCAACAAGCACAACAAGCGCCACTTTTTGATGCTTTCGGTACCTC
TTCTACAGCTGCACCAACAACAAGTCAACCGACAGCAAACGCTTCTTTTG
ATTTCTTTGCTTCTTCCGCTGGACCAGTATCGACAGCTTCCTCTTCTGCT
ACTGATTTCTTTGCCATGTCTTCGAATACAAGTCAACAACCAGCAGCATC
CTCGTCTGCATTTGGAGTGACTTCTGATGCAGGCATCTATAAAATTACCA
CAATCTGCTGCACCTACCCCTCAACAACCTGTGTTACACCAACCTGAGAA
GAAATCTAATTTCGACCTCCTTGGTGACCTGAGTGGTGACCCTTTTGCTT
CATCTGCTCCACAACCCACAGCAAGTAGTTTGTCGGAGTACATGGCTTGC
ATTATGGGAGTCAAGTGCCGCACCTGAACCAGATTCTCGTGAAGAACAAA
AAGTGAAAGATTTCCTTGGGAAAAAATATGAAAGGAAAATGTGGTACAGC
AGTAAACCAAAGGCAAAAGCACAAGCAGCAGAACCTGAAGCAAAACCGTT
GAAAACATTGTTGGGTGAAAATTCCCCTCAAGTTATTGTAGGCTCTAAAC
AAGAACAAAAGTCTATGGCAAGTTTTACACCACAAGAAATGGAATTTCTA
CAATCACATGGCAATGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031731XLOC_031731Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050122-proteinTCONS_00050122-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050122-exon-scaffold_167-1575043694:1669174..1669469TCONS_00050122-exon-scaffold_167-1575043694:1669174..1669469Clytia hemisphaericaexon
TCONS_00050122-exon-scaffold_167-1575043694:1668742..1668978TCONS_00050122-exon-scaffold_167-1575043694:1668742..1668978Clytia hemisphaericaexon
TCONS_00050122-exon-scaffold_167-1575043694:1668399..1668543TCONS_00050122-exon-scaffold_167-1575043694:1668399..1668543Clytia hemisphaericaexon
TCONS_00050122-exon-scaffold_167-1575043694:1667888..1668163TCONS_00050122-exon-scaffold_167-1575043694:1667888..1668163Clytia hemisphaericaexon
TCONS_00050122-exon-scaffold_167-1575043694:1666641..1667599TCONS_00050122-exon-scaffold_167-1575043694:1666641..1667599Clytia hemisphaericaexon
TCONS_00050122-exon-scaffold_167-1575043694:1664621..1666206TCONS_00050122-exon-scaffold_167-1575043694:1664621..1666206Clytia hemisphaericaexon
TCONS_00050122-exon-scaffold_167-1510915933:1669174..1669469TCONS_00050122-exon-scaffold_167-1510915933:1669174..1669469Clytia hemisphaericaexon
TCONS_00050122-exon-scaffold_167-1510915933:1668742..1668978TCONS_00050122-exon-scaffold_167-1510915933:1668742..1668978Clytia hemisphaericaexon
TCONS_00050122-exon-scaffold_167-1510915933:1668399..1668543TCONS_00050122-exon-scaffold_167-1510915933:1668399..1668543Clytia hemisphaericaexon
TCONS_00050122-exon-scaffold_167-1510915933:1667888..1668163TCONS_00050122-exon-scaffold_167-1510915933:1667888..1668163Clytia hemisphaericaexon
TCONS_00050122-exon-scaffold_167-1510915933:1666641..1667599TCONS_00050122-exon-scaffold_167-1510915933:1666641..1667599Clytia hemisphaericaexon
TCONS_00050122-exon-scaffold_167-1510915933:1664621..1666206TCONS_00050122-exon-scaffold_167-1510915933:1664621..1666206Clytia hemisphaericaexon
TCONS_00050122-exon-scaffold_167-1491911889:1669174..1669469TCONS_00050122-exon-scaffold_167-1491911889:1669174..1669469Clytia hemisphaericaexon
TCONS_00050122-exon-scaffold_167-1491911889:1668742..1668978TCONS_00050122-exon-scaffold_167-1491911889:1668742..1668978Clytia hemisphaericaexon
TCONS_00050122-exon-scaffold_167-1491911889:1668399..1668543TCONS_00050122-exon-scaffold_167-1491911889:1668399..1668543Clytia hemisphaericaexon
TCONS_00050122-exon-scaffold_167-1491911889:1667888..1668163TCONS_00050122-exon-scaffold_167-1491911889:1667888..1668163Clytia hemisphaericaexon
TCONS_00050122-exon-scaffold_167-1491911889:1666641..1667599TCONS_00050122-exon-scaffold_167-1491911889:1666641..1667599Clytia hemisphaericaexon
TCONS_00050122-exon-scaffold_167-1491911889:1664621..1666206TCONS_00050122-exon-scaffold_167-1491911889:1664621..1666206Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:1664621..1669469 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.00308	7.87626	27.1477	27.453	13.2652	8.38641	13.9899	13.6851	4.25365	7.54551	4.73372	5.06393	6.27416	6.40951	3.8859	4.23466	6.43114	7.23806	5.415	5.82409	7.70182	7.59796	5.86036	7.03023	10.4603	14.534	7.95398	6.81249	10.7426	10.217
Blast
[Close]
BLAST of TCONS_00050122 vs. Swiss-Prot (Human)
Match: AGFG2 (Arf-GAP domain and FG repeat-containing protein 2 OS=Homo sapiens GN=AGFG2 PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 7.686e-23
Identity = 72/163 (44.17%), Postives = 92/163 (56.44%), Query Frame = 3 
Query:  225 HXKSISMASFTPQEMEFLQSHGNEVCRSTWLALWESSAAPEPDSREEQKVKDFLGKKYERKMWY------------SSXXXXXXXXXXXXXXXXXTLLGENSPQVIVGSKQEQKSASIKLPQSAAPTPQ----QPVLHQPEKKSNFDLLGDLSGDPFASSAPQ 665
              KSISM +FT  E+ FLQS GNEVCR  WL L+++  +  PDSR+ QKVK+FL +KYE+K WY                    Q + PE KPL+TLLG+ +P + V +    +  S    QS A T Q    QP  H   KK++ DLL D+ GDPFA  APQ
Sbjct:   82 RVKSISMTTFTEPEVVFLQSRGNEVCRKIWLGLFDARTSLVPDSRDPQKVKEFLQEKYEKKRWYVPPDQVKGPTYTKGSASTPVQGSIPEGKPLRTLLGDPAPSLSVAASTSSQPVS----QSHARTSQARSTQPPPHSSVKKASTDLLADIGGDPFA--APQ 238
The following BLAST results are available for this feature:
BLAST of TCONS_00050122 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AGFG27.686e-2344.17Arf-GAP domain and FG repeat-containing protein 2 ... [more]
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