TCONS_00050121 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050121
Unique NameTCONS_00050121
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3410

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050121 ID=TCONS_00050121|Name=TCONS_00050121|organism=Clytia hemisphaerica|type=transcript|length=3410bp
aatcacttcaatttacttttaccgaaattttcctccgatttttggttttt
gattGGATAAAGTCTATTTAAGGCCGGATACATCNCAAATCTATATCAAT
GGCAAGTTTTACACCACAAGAAATGGAATTTCTACAATCACATGGCAATG
AGgtttgtcgGAGTACATGGCTTGCATTATGGGAGTCAAGTGCCGCACCT
GAACCAGATTCTCGTGaagaacaaaaagtgaaagATTTCCTTGGGAAAAA
ATATGAAAGGAAAATGTGGTACAGCAGTAAACCAAAGGCAAAAGCACAAG
CAGCAGAACCTGAAGCAAAACCGTTGAAAACATTGTTGGGTGAAAATTCC
CCTCAAGTTATTGTAGGCTCTAAACAAGAACAAAAGTCTGCATCTATAAA
ATTACCACAATCTGCTGCACCTACCCCTCAACAACCTGTGTTACACCAAC
CTGAGAAGAAATCTAATTTCGACCTCCTTGGTGACCTGAGTGGTGACCCT
TTTGCTTCATCTGCTCCACAACCCACAGCAAGTAACTCAGCAGATGCTTT
TGGAGTGTTTGCACAGCCACCANTGTTGAATATTTTCAGACTCTGCAGAT
GCTTTTGGAGTGTTTGCACAGCCACCACCAGCTCAAAACCAACAAGCACA
ACAAGCGCCACTTTTTGATGCTTTCGGTACCTCttctacagctgcaccaa
caacAAGTCAACCGACAGCAAACgcttcttttgatttctttgctTCTTCC
GCTGGACCAGTATCGACAGCTTCCTCTTCTGCTACTGATTTCTTTGCCAT
GTCTTCGAATACAAGTCAACAACCAGCAGCATCCTCGTCTGCATTTGGAG
TGACTTCTGATGCAGgTCTTTCAGTTGGAAACAACAGCGGTGGAGATAAA
TATGCTGCATTCGCTGATCTAGGTACATCCTCCACATCAATATTCGAGAG
TCAATCCTCCTCAATATTTGGTAGCAGTAGTTTTGGATCCGCTCCAGTAT
CTTCCAGTACACAGTCAATTTTTAGCAACAATAACCCTATGAACAataca
caacaacaacaatcaaGTAACAATATATTTGGAGCACAACCGACACAACA
ACCTTTTCAACAACAAGgacaaatgtcaaatttttcgCAACCGCAGGTGC
CTCAACAGGCACAACAGAATCCGTTTATGACTTCGAATAATGCTCCTCAA
CAGCCAGCCCAACCACAAAAACCATTGAATCCGTTCCAAAATTTCTCGGC
ATCTGGCGGAAGCACAATGTCACAAGCAGCACAGCTCGATAATTTTGGTT
CCAGCATGGTGAACAATCAGAACAACTCTTGGGGCACAACCGCCTCTAGT
GCAAATAGCCAATCTTTCTCTAGTAACAATATGTTTTCAACTCAATTTAA
TGCTCAGACATCTAATACTGGGTTCAGTATGCAAGCAAACCAAAATGCAT
CAACACAGCCTGTTTATTCCAATAACACAAATTACACTCAACCGCAACAA
CAACCCCAAACACAACAACAACAGAACTTTGGTGGTAATATTTTccaaca
acaacagcagcagCAACCGATCAGTCAAAATAACATGTTTGGAAATTCAC
AACAAAATGCACAACAAGCTTTTAATGCAGGACAACAGTCAAATGGCTTT
TCTTCACAACAAagttttggcaattttggaGCACAACAACAGCAGTCTGC
AGCACCTCAGAAACCATTTGGTGGGGTGCAAATGCCAGGTTTTGGACAAC
AACCTTTTCCTCAACagccacaacaacaacaaccacagcAACAAAATTTT
GGAACCTGGGGCCAACAACAGCAGGCCAttccacaacaacaacagccaGC
AGTAAAATTATCCAATAACCCATTTATGTGATATGCAAATGgttacaaaa
tataaagaagAAGTGGGCTATAGGTGATTCCAAAACAATACGATTTGGTG
TTTCGCTACGTTTCTGGCTGTATACCGTAACTTGTATTTGAATACCTGTA
AGGGTATCAAAAAGAAGTATTTGGTGGTCAGAAATATACATGATTCTAAT
GGATCATTAGAATTCGATTTTGGTGAACTCTGAACCCTTTTAGGATTGGG
CTAAAAGGAGAAGAATCAAAATTCATAACACTTCTTACTTTTTGAACTAG
CAATGTTCTGATTATGTcttgatcaatttttttttccgattAGTGATTTG
AGGAACTGAAGGGTCATTATGATAAACTTCATGGTTTTTTTGCTTACAAC
TCTTTGTAGAATTCAAATTAGGAATAAGGCAGAGTACAAtaattttctat
aaaatttCCATACTTTATATCGCGTTTTTATCGTTAAGACATTTTATTAC
TGGAGAGAGAAATGCTGATCTTTTTCTAGTCTAGTTCTGTTCTGTGATAG
TATAATATTTATCAACTCATATCTTAGACTTTATAAAAAGTGCTGAAATA
TGATTGTTTAGTTAGAAActattttttgcccaaatttctCTGTAAGTATA
ATATTGATgcattcaaaatatttcaactgtaaaaatttaattttttatac
ttctttttcctttttttttcaaatctaatAACATTTCTCTTTATGATTGT
TTTCTTTATGACCAGAGTAGAGTCAATTAGAATACACTTCCATTGGAAAG
GCTTTGGTTGCAAGTTTTGATCAATTTTAAAAACGTCGATTGCACTATAA
GGCcaaacaaaaatctcttttgaaacCAGAATTATGACAAAAAGAAGGTA
TgcaattcttcatttttttcacatgGCCTTCTTACAGCAACTTTACTTTG
AGGAATAATTTTCATAGTTTATCAGATTTTGGGAACGCTTTTGCGCGCTT
TTGTTACAATGGTTGTCAACGAGTCAATAATGTTCGATCAAATTTCTTGT
AATACAGTAGTTAAGTTTTTCAATTGGAAGATATTACTGCCTTGGTTCTC
TTATAAGACAGCAAATTATGACCTCTTTagcttttaaatgaaaaatatat
tagaaAGACAGAAAAAGATTATATTATCAGAATTTATATTACTACTCTTC
tgagaaaaatatttggaaaaataatcaatacatgtttttcttttataagc
ataacgtttataagcatatgcaggctcagtttttggtacctaaacaatgg
ctctattgtttgagaacaatagaatgctaagcataatgcgagcctgatat
agggacagacacttgcttataaaaaaaacatgtattacgAGAAGACAACA
ATATCTTTACAATTTGTAATTATTACTATTATAACCCTCttttgtttatt
attagtattacttAATGACATAATTATTATTTACGTGGttttatattttg
ttatcaTCTTAATTGTAAAGAATATGAGGAATAATAAAcgatttattttt
ttgagaaagg
Run BLAST on NCBI

transcript from alignment at scaffold_167:1664621..1669325-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050121 ID=TCONS_00050121|Name=TCONS_00050121|organism=Clytia hemisphaerica|type=transcript|length=4705bp|location=Sequence derived from alignment at scaffold_167:1664621..1669325- (Clytia hemisphaerica)
AATCACTTCAATTTACTTTTACCGAAATTTTCCTCCGATTTTTGGTTTTT
GATTGGATAAAGTCTATTTAAGGCCGGATACATCNCAAATCTATATCAAT
GGCAAGTTTTACACCACAAGAAATGGAATTTCTACAATCACATGGCAATG
AGGTTTTACTAATTTTGTCTTTATTTTTCTAAACTTTTTTAAATCGTTTT
TCTTTGAATTGATGTCCCTATTTGCAACAAACCAAAATGATAAGAACTAT
TGATTTTTTAATTGTGATTTGACAAATTTGATTTTTTATACAGCATTGCA
TCCTGATTAGTGTTTTCAATATTTTCTCTCTTCCATGTTCATTCAAGGTT
TGTCGGAGTACATGGCTTGCATTATGGGAGTCAAGTGCCGCACCTGAACC
AGATTCTCGTGAAGAACAAAAAGTGAAAGATTTCCTTGGGAAAAAATATG
AAAGGAAAATGTGGTACAGCAGTAAACCAAAGGCAAAAGCACAAGCAGCA
GAACCTGAAGCAAAACCGTTGAAAACATTGTTGGGTGAAAATTCCCCTCA
AGTTATTGTAGGCTCTAAACAAGAACAAAAGTCTGTAAGTAAAACAATTG
AGTTTTGAGCTGAGTTGTTGTTTTTAAAAATTCTGAGTATAAAATTCCAT
AAAGTTTAATTCAGCATGAAAAGTTATCCACAATAATAATAAAGTGATTA
TTTCATAATAATGAAATTAATTATCAAATATCATCTATACCAATACTGAA
ATATTCCAGCATTCAATCATTTCTACTTATAGGCATCTATAAAATTACCA
CAATCTGCTGCACCTACCCCTCAACAACCTGTGTTACACCAACCTGAGAA
GAAATCTAATTTCGACCTCCTTGGTGACCTGAGTGGTGACCCTTTTGCTT
CATCTGCTCCACAACCCACAGCAAGTAGTACGTAATGAAATTCCTTTTTA
GAAACCTGTAAACTTTGGTTCTTTAAATGCATTAATTTTGATTCTTTCAT
ATTTTGTGGAGTCTTATCCATTGATTTAAATTGTTTGAAGAAAATCAAAA
GTCTAAATTTTCAATTTATCAATAAAAACCAACAAATAAAATGTTGAATA
TTTTCAGACTCAGCAGATGCTTTTGGAGTGTTTGCACAGCCACCANTGTT
GAATATTTTCAGACTCTGCAGATGCTTTTGGAGTGTTTGCACAGCCACCA
CCAGCTCAAAACCAACAAGCACAACAAGCGCCACTTTTTGATGCTTTCGG
TACCTCTTCTACAGCTGCACCAACAACAAGTCAACCGACAGCAAACGCTT
CTTTTGATTTCTTTGCTTCTTCCGCTGGACCAGTATCGACAGCTTCCTCT
TCTGCTACTGATTTCTTTGCCATGTCTTCGAATACAAGTCAACAACCAGC
AGCATCCTCGTCTGCATTTGGAGTGACTTCTGATGCAGGTAATCTCATCG
AATGCCAGTAGTCTTTGAAATGGTAACAATGAACAATTTTGAAAATAATT
GATTACAATCTCGTGCTCAATTAATTGTTTATAGCAGAAGTTCCCCTGCA
CAAGTGCACATATTGTTTTAGACCCCCTAAAAGATACATTATCTTTCTTG
ATAATAATAAGGATACTACTATTTTATTTTATTTTGTAAGGTCTTTCAGT
TGGAAACAACAGCGGTGGAGATAAATATNTTCTTGATAATAATAATATTG
ATACTACTATTTTTTCATTTTGTAAGGTCTTTCAGTTGGAAACAACAGCG
GTGGAGATAAATATGCTGCATTCGCTGATCTAGGTACATCCTCCACATCA
ATATTCGAGAGTCAATCCTCCTCAATATTTGGTAGCAGTAGTTTTGGATC
CGCTCCAGTATCTTCCAGTACACAGTCAATTTTTAGCAACAATAACCCTA
TGAACAATACACAACAACAACAATCAAGTAACAATATATTTGGAGCACAA
CCGACACAACAACCTTTTCAACAACAAGGACAAATGTCAAATTTTTCGCA
ACCGCAGGTGCCTCAACAGGCACAACAGAATCCGTTTATGACTTCGAATA
ATGCTCCTCAACAGCCAGCCCAACCACAAAAACCATTGAATCCGTTCCAA
AATTTCTCGGCATCTGGCGGAAGCACAATGTCACAAGCAGCACAGCTCGA
TAATTTTGGTTCCAGCATGGTGAACAATCAGAACAACTCTTGGGGCACAA
CCGCCTCTAGTGCAAATAGCCAATCTTTCTCTAGTAACAATATGTTTTCA
ACTCAATTTAATGCTCAGACATCTAATACTGGGTTCAGTATGCAAGCAAA
CCAAAATGCATCAACACAGCCTGTTTATTCCAATAACACAAATTACACTC
AACCGCAACAACAACCCCAAACACAACAACAACAGAACTTTGGTGGTAAT
ATTTTCCAACAACAACAGCAGCAGCAACCGATCAGTCAAAATAACATGTT
TGGAAATTCACAACAAAATGCACAACAAGCTTTTAATGCAGGACAACAGT
CAAATGGCTTTTCTTCACAACAAAGTTTTGGCAATTTTGGAGCACAACAA
CAGCAGTCTGCAGCACCTCAGAAACCATTTGGTGGGGTGCAAATGCCAGG
TTTTGGACAACAACCTTTTCCTCAACAGCCACAACAACAACAACCACAGC
AACAAAATTTTGGAACCTGGGGCCAACAACAGCAGGTACTCATTTTTTGA
ATAGTTTTATCCAAGAAGTTCGACTCAAAGCCAGAAAATCCTTTAATTCC
TTACGTATTTATTGACATGCTGACGTGACTTATTGTCCATTTAATTGAAA
TTGATTTTTACAATTTCGAGGTTCCATTTATACCACTGTTTGTGGCAGAA
AGTAAGCACAGGTATTATGTATTTTGAACTAATTAGAAGATTCAACCAGT
AGCATTTTCAAGGGGTGTCGGAAAATTTGTGTAGGAGAGCGCAATTTTGT
TACGAAGTTATTATCTTTTAATGTTATGAAAAGATAGTTACTTTGTCATA
AAAATCTGCTCTCCTACGCAAATTTTCCGACACCCCTGAGAACCCTACTG
TTCAACTAAAGCCAGACAATGACCACCCTAATGCCTTCATAATAAAGTTT
CGTCACCATTCTTTTCCAGGCCATTCCACAACAACAACAGCCAGCAGTAA
AATTATCCAATAACCCATTTATGTGATATGCAAATGGTTACAAAATATAA
AGAAGAAGTGGGCTATAGGTGATTCCAAAACAATACGATTTGGTGTTTCG
CTACGTTTCTGGCTGTATACCGTAACTTGTATTTGAATACCTGTAAGGGT
ATCAAAAAGAAGTATTTGGTGGTCAGAAATATACATGATTCTAATGGATC
ATTAGAATTCGATTTTGGTGAACTCTGAACCCTTTTAGGATTGGGCTAAA
AGGAGAAGAATCAAAATTCATAACACTTCTTACTTTTTGAACTAGCAATG
TTCTGATTATGTCTTGATCAATTTTTTTTTCCGATTAGTGATTTGAGGAA
CTGAAGGGTCATTATGATAAACTTCATGGTTTTTTTGCTTACAACTCTTT
GTAGAATTCAAATTAGGAATAAGGCAGAGTACAATAATTTTCTATAAAAT
TTCCATACTTTATATCGCGTTTTTATCGTTAAGACATTTTATTACTGGAG
AGAGAAATGCTGATCTTTTTCTAGTCTAGTTCTGTTCTGTGATAGTATAA
TATTTATCAACTCATATCTTAGACTTTATAAAAAGTGCTGAAATATGATT
GTTTAGTTAGAAACTATTTTTTGCCCAAATTTCTCTGTAAGTATAATATT
GATGCATTCAAAATATTTCAACTGTAAAAATTTAATTTTTTATACTTCTT
TTTCCTTTTTTTTTCAAATCTAATAACATTTCTCTTTATGATTGTTTTCT
TTATGACCAGAGTAGAGTCAATTAGAATACACTTCCATTGGAAAGGCTTT
GGTTGCAAGTTTTGATCAATTTTAAAAACGTCGATTGCACTATAAGGCCA
AACAAAAATCTCTTTTGAAACCAGAATTATGACAAAAAGAAGGTATGCAA
TTCTTCATTTTTTTCACATGGCCTTCTTACAGCAACTTTACTTTGAGGAA
TAATTTTCATAGTTTATCAGATTTTGGGAACGCTTTTGCGCGCTTTTGTT
ACAATGGTTGTCAACGAGTCAATAATGTTCGATCAAATTTCTTGTAATAC
AGTAGTTAAGTTTTTCAATTGGAAGATATTACTGCCTTGGTTCTCTTATA
AGACAGCAAATTATGACCTCTTTAGCTTTTAAATGAAAAATATATTAGAA
AGACAGAAAAAGATTATATTATCAGAATTTATATTACTACTCTTCTGAGA
AAAATATTTGGAAAAATAATCAATACATGTTTTTCTTTTATAAGCATAAC
GTTTATAAGCATATGCAGGCTCAGTTTTTGGTACCTAAACAATGGCTCTA
TTGTTTGAGAACAATAGAATGCTAAGCATAATGCGAGCCTGATATAGGGA
CAGACACTTGCTTATAAAAAAAACATGTATTACGAGAAGACAACAATATC
TTTACAATTTGTAATTATTACTATTATAACCCTCTTTTGTTTATTATTAG
TATTACTTAATGACATAATTATTATTTACGTGGTTTTATATTTTGTTATC
ATCTTAATTGTAAAGAATATGAGGAATAATAAACGATTTATTTTTTTGAG
AAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031731XLOC_031731Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050121-exon-scaffold_167-1575043694:1669174..1669325TCONS_00050121-exon-scaffold_167-1575043694:1669174..1669325Clytia hemisphaericaexon
TCONS_00050121-exon-scaffold_167-1575043694:1668742..1668978TCONS_00050121-exon-scaffold_167-1575043694:1668742..1668978Clytia hemisphaericaexon
TCONS_00050121-exon-scaffold_167-1575043694:1668399..1668543TCONS_00050121-exon-scaffold_167-1575043694:1668399..1668543Clytia hemisphaericaexon
TCONS_00050121-exon-scaffold_167-1575043694:1667888..1668218TCONS_00050121-exon-scaffold_167-1575043694:1667888..1668218Clytia hemisphaericaexon
TCONS_00050121-exon-scaffold_167-1575043694:1666641..1667599TCONS_00050121-exon-scaffold_167-1575043694:1666641..1667599Clytia hemisphaericaexon
TCONS_00050121-exon-scaffold_167-1575043694:1664621..1666206TCONS_00050121-exon-scaffold_167-1575043694:1664621..1666206Clytia hemisphaericaexon
TCONS_00050121-exon-scaffold_167-1510915933:1669174..1669325TCONS_00050121-exon-scaffold_167-1510915933:1669174..1669325Clytia hemisphaericaexon
TCONS_00050121-exon-scaffold_167-1510915933:1668742..1668978TCONS_00050121-exon-scaffold_167-1510915933:1668742..1668978Clytia hemisphaericaexon
TCONS_00050121-exon-scaffold_167-1510915933:1668399..1668543TCONS_00050121-exon-scaffold_167-1510915933:1668399..1668543Clytia hemisphaericaexon
TCONS_00050121-exon-scaffold_167-1510915933:1667888..1668218TCONS_00050121-exon-scaffold_167-1510915933:1667888..1668218Clytia hemisphaericaexon
TCONS_00050121-exon-scaffold_167-1510915933:1666641..1667599TCONS_00050121-exon-scaffold_167-1510915933:1666641..1667599Clytia hemisphaericaexon
TCONS_00050121-exon-scaffold_167-1510915933:1664621..1666206TCONS_00050121-exon-scaffold_167-1510915933:1664621..1666206Clytia hemisphaericaexon
TCONS_00050121-exon-scaffold_167-1491911889:1669174..1669325TCONS_00050121-exon-scaffold_167-1491911889:1669174..1669325Clytia hemisphaericaexon
TCONS_00050121-exon-scaffold_167-1491911889:1668742..1668978TCONS_00050121-exon-scaffold_167-1491911889:1668742..1668978Clytia hemisphaericaexon
TCONS_00050121-exon-scaffold_167-1491911889:1668399..1668543TCONS_00050121-exon-scaffold_167-1491911889:1668399..1668543Clytia hemisphaericaexon
TCONS_00050121-exon-scaffold_167-1491911889:1667888..1668218TCONS_00050121-exon-scaffold_167-1491911889:1667888..1668218Clytia hemisphaericaexon
TCONS_00050121-exon-scaffold_167-1491911889:1666641..1667599TCONS_00050121-exon-scaffold_167-1491911889:1666641..1667599Clytia hemisphaericaexon
TCONS_00050121-exon-scaffold_167-1491911889:1664621..1666206TCONS_00050121-exon-scaffold_167-1491911889:1664621..1666206Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:1664621..1669325 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.2773	10.4703	40.5563	38.3816	2.2221	3.70088	2.35869	4.01401	6.60438	9.24177	10.4978	3.27229	10.134	9.29997	7.23176	6.71415	11.9355	10.1187	5.58325	6.61736	9.46388	9.88818	11.0316	11.446	8.27036	6.44432	11.1392	8.60148	13.116	14.5695
Blast
[Close]
BLAST of TCONS_00050121 vs. Swiss-Prot (Human)
Match: AGFG2 (Arf-GAP domain and FG repeat-containing protein 2 OS=Homo sapiens GN=AGFG2 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 3.556e-22
Identity = 67/157 (42.68%), Postives = 90/157 (57.32%), Query Frame = 3 
Query:   87 KSISMASFTPQEMEFLQSHGNEVCRSTWLALWESSAAPEPDSREEQKVKDFLGKKYERKMWY------------SSXXXXXXXXXXXXXXXXXTLLGENSPQVIVGSKQEQKSASIKLPQSAAPTPQQPVLHQPEKKSNFDLLGDLSGDPFASSAPQ 521
            KSISM +FT  E+ FLQS GNEVCR  WL L+++  +  PDSR+ QKVK+FL +KYE+K WY                    Q + PE KPL+TLLG+ +P + V +    +  S    +++     QP  H   KK++ DLL D+ GDPFA  APQ
Sbjct:   84 KSISMTTFTEPEVVFLQSRGNEVCRKIWLGLFDARTSLVPDSRDPQKVKEFLQEKYEKKRWYVPPDQVKGPTYTKGSASTPVQGSIPEGKPLRTLLGDPAPSLSVAASTSSQPVSQSHARTSQARSTQPPPHSSVKKASTDLLADIGGDPFA--APQ 238
The following BLAST results are available for this feature:
BLAST of TCONS_00050121 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AGFG23.556e-2242.68Arf-GAP domain and FG repeat-containing protein 2 ... [more]
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