TCONS_00050117 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050117
Unique NameTCONS_00050117
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length454

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050117 ID=TCONS_00050117|Name=TCONS_00050117|organism=Clytia hemisphaerica|type=transcript|length=454bp
AACACATCAGACAAGCATCTACCTGCTAACAGTGTTGGTGCCAAGGCTGC
ATTTTTTGATGGGAAGAACAAGACAAACGGCCAatataaacaacaaaaaa
tatcaacaaaaaatgGACGACCTCAAAACTATCCAAAAATCGATGCGGCT
TCTTCAACtaagcaacaaagaaaaagaggCAATCAGGCTTCAACGAGTGA
TTtgccaaaaaaggtaaaattgAGTGATGGAAAGTTTGCTATAAAATCAA
AGGAGACAGAAAATTTTCAACGTTCAAGGACTAATGGAAAAGTCACATGT
GTGAAAATAGATAGTGACAACCAGCTCCCGAGTGAACAAGAACTCTTTTC
TTCATGTTCAACTCGTGAAGTTATTGTCAAACGAGAAGTATTTGAATCCA
CACAACAAGTTGACCAACAACCTAAAAATATCGTACAAACAAACAAGGTT
ACTG
Run BLAST on NCBI

transcript from alignment at scaffold_167:1512149..1514882-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050117 ID=TCONS_00050117|Name=TCONS_00050117|organism=Clytia hemisphaerica|type=transcript|length=2734bp|location=Sequence derived from alignment at scaffold_167:1512149..1514882- (Clytia hemisphaerica)
AACACATCAGACAAGCATCTACCTGCTAACAGTGTTGGTGCCAAGGCTGC ATTTTTTGATGGGAAGAACAAGACAAACGGCCAATATAAACAACAAAAAA TATCAACAAAAAATGGACGACCTCAAAACTATCCAAAAATCGATGCGGCT TCTTCAACTAAGCAACAAAGAAAAAGAGGCAATCAGGCTTCAACGAGTGA TTTGCCAAAAAAGGTAAAATTGAGTGATGGAAAGTTTGCTATAAAATCAA AGGAGACAGAAAATTTTCAACGTTCAAGGACTAATGGAAAAGTCACATGT GTGAAAATAGATAGTGACAACCAGCTCCCGAGTGAACAAGAACTCTTTTC TTCATGTTCAACTCGTGAAGTTATTGTCAAACGAGAAGTATTTGAATCCA CACAACAAGTTGACCAACAACCTAAAAATATCGTACAAACAAACAAGGTT ACTGAATACCAAGATGCTTCACCTGAGGCCCCAAACAAGGTTACTGACCA CCAAGAAGCTTCACCCGAAGCACCAAACAAGGTTATTGACCACCAAGATG CTTCACCTGAGGCACCGAACAAGGTTACTGACCACCAAGATGCTTCACCT GAGGCACCGAACAAGGTTACTGACCGCCAAGATGCTTCACCTGAGGCACC GAACAAGGTTCCTGACCACCAAGATGCTACAACTGAGGCACCGAACAAGG TGACTGACCACCGTGTAGCTACAACCGCGAAAGCTAACAAGGTTACTGAC TACCAAGATGCTACAACTGAGGCTACAACTGAGGCGCACAACAAGGTTGC ACAGTCCCAAGATGCTACAACCGAGGTACTGAACAAGGGTACTGACCACC AAGATGCTTCACCTGAGGCACCGAACAAGGTTCCTGACCACCAAGATGCT ACAACTGAGGCACCGAACAAGGTGACTGACCACCGTGTAGCTACAACCGC GAAAGCTAACAAGGTTACTGACTACCAAGATGCTACAACTGAGGCTACAA CTGAGGCGCACAACAAGGTTGCACAGTCCCAAGATGCTACAACCGAGGTA CTGAACAAGGGTACTGACCACCAAGATGCTTCACCTGAGGCACCGAACAA GGTTCCTGACCACCAAGATGCTACAACTGAGGCACCGAACAAGGTGACTG ACCACCGTGTAGCTACAACCGCGAAAGCTAACAAGGTTACTGACTACCAA GATGCTACAACTGAGGCTACAACTGAGGCGCACAACAAGGTTGCACAGTC CCAAGATGCTACAACCGAGGTACTGAACAAGGGTACTGACCACCAAGATG CTTCACCTGAGGCACCGAACAAGGTTCCTGACCACCAAGATGCTACAACT GAGGCACCGAACAAGGTGACTGACCACCGTGTAGCTACAACCGCGAAAGC TAACAAGGTTACTGACTACCAAGATGCTACAACTGAGGCTACAACTGAGG CGCACAACAAGGTTGCACAGTCCCAAGATGCTACAACCGAGGTACTGAAC AAGGGTACTGACCACCAAGATGCTTCACCTGAGGCACCGAACAAGGTTCC TGACCACCAAGATGCTACAACTGAGGCACCGAACAAGGTGACTGACCACC GTGTAGCTACAACCGCGAAAGCTAACAAGGTTACTGACTACCAAGATGCT ACAACTGAGGCTACAACTGAGGCGCACAACAAGGTTGCACAGTCCCAAGA TGCTACAACCGAGGTACTGAACAAGGGTACTGACCACCAAGATGCTTCAC CTGAGGCACCGAACAAGGTTACTGACCCCCAAGATGCTACAACCGAGGCA CCTAACAAGGTTACTGACTACCAAGATGCTACAACTGAGGCTACAACTGA GGCACCGAACAAGGTTACTGACCACCAAGATGCTACAACCGAGGTACTGA ACAAGGCTACTGACCACCAAAATGCTACAACCGAGGCACCGAACAAAGTT ATTGACCACAAAGAAGTTTCAACCGAAGCACCGAACAAGGTTACTGACCA CCAAGAAGCTTCACCCGAGGAACCAAGCAAGATTACTGACCACCAAGATG CTACAACTGAGGCTACAACTGAGGCTACAACTGAGGCACCGAACAAGGTG ACTGACTACCAAGATGCTACAACTGAGGCACCGAACAAGGTTACTGACCA CAAAGAAGCTTCATCAGAGGCACCAAATAAGGCTACTGACAACCAAGATG CTACAACCGAGGCACCGAACAAGGTTACTGACCACCAAGATGCTTCAACC GAGGCACCGAACAAGGTGACTGACTACCAAGATGCTACAACTGAGGCACC GAACAAGGTTACTGACCACCACGAACCTTCAACCGAGGCACCGAACAAGG TTACTGACCACCAAGAAGCTGCAACCGAGGCACTGAGCAAGGTTACTGAC TACCTAGATGTTACAACCGAGGCACCGAACAAGGTTACTGACCACCAAGA AGCTACAACCGAGGCACCGAATAAGGTTATGGACCACCAAGAAGCTTCAC CCGAAGCACCAAGCAAGGTGACTGACCACCAAGATGCTTCAACTGAGGCA CCGAACAAGGTTACTGACCACCAAGATGCTTCAACCGAGGCACCGAACAA GGTGACTGACTACCAAGATGCTACAACTGAGGCACCGAACAAGGTCACTG ACCACAAAGAAGCTTCAACCGAAGCACCGAACAAGGTTACTGACCACCAA GAAGCTACAACCGAGGAACCAAACAAGGTTACTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031729XLOC_031729Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050117-exon-scaffold_167-1575043694:1514436..1514882TCONS_00050117-exon-scaffold_167-1575043694:1514436..1514882Clytia hemisphaericaexon
TCONS_00050117-exon-scaffold_167-1575043694:1512149..1512155TCONS_00050117-exon-scaffold_167-1575043694:1512149..1512155Clytia hemisphaericaexon
TCONS_00050117-exon-scaffold_167-1510915933:1514436..1514882TCONS_00050117-exon-scaffold_167-1510915933:1514436..1514882Clytia hemisphaericaexon
TCONS_00050117-exon-scaffold_167-1510915933:1512149..1512155TCONS_00050117-exon-scaffold_167-1510915933:1512149..1512155Clytia hemisphaericaexon
TCONS_00050117-exon-scaffold_167-1491911889:1514436..1514882TCONS_00050117-exon-scaffold_167-1491911889:1514436..1514882Clytia hemisphaericaexon
TCONS_00050117-exon-scaffold_167-1491911889:1512149..1512155TCONS_00050117-exon-scaffold_167-1491911889:1512149..1512155Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:1512149..1514882 -
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050117 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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