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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050113 ID=TCONS_00050113|Name=TCONS_00050113|organism=Clytia hemisphaerica|type=transcript|length=1921bpRun BLAST on NCBI protein sequence of TCONS_00050113-protein >TCONS_00050113-protein ID=TCONS_00050113-protein|Name=TCONS_00050113-protein|organism=Clytia hemisphaerica|type=polypeptide|length=263bp MMTSNTPTNGGSGSSTKVDCTRANQNVWLVKVPKYMAEVWSKADGSGIVGRun BLAST on NCBI transcript from alignment at scaffold_167:1444824..1492135- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00050113 ID=TCONS_00050113|Name=TCONS_00050113|organism=Clytia hemisphaerica|type=transcript|length=47312bp|location=Sequence derived from alignment at scaffold_167:1444824..1492135- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_167:1444824..1492135- >TCONS_00050113 ID=TCONS_00050113|Name=TCONS_00050113|organism=Clytia hemisphaerica|type=CDS|length=6336bp|location=Sequence derived from alignment at scaffold_167:1444824..1492135- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00050113 vs. Swiss-Prot (Human)
Match: T2FB (General transcription factor IIF subunit 2 OS=Homo sapiens GN=GTF2F2 PE=1 SV=2) HSP 1 Score: 195.667 bits (496), Expect = 4.200e-57 Identity = 110/254 (43.31%), Postives = 154/254 (60.63%), Query Frame = 2
Query: 275 KVDCTRANQN--VWLVKVPKYMAEVWSKADGSGIVGSLRIPVNSGPNNVSFHLAQHLTKLGESG------DIPEKHKFVMSDFR-QTMGVFXXXXXXXXXXXXXXRDKIAFEGTISKRIDCRPIQSTAYMSMKMTDIKKALKPKRTTVFTDEKVSS-FRPVNDHSSMNEQAEKKRSTEKRVRSERDEVLETIFSAFEKHQYYTLKDLIGITRQPVTHLKSILRDVCNYNLKNPHKNTYELKPEYRHYN---KSD 997
++D T A QN VWLVKVPKY+++ W+KA G G VG LRI G VSF L + L + + G P +H FV+ QT+ VF+E+ DK++ EG + +R +CRP S YM +K I+++ KP R + D+ V++ ++PV +H E KK+ KR R+++ VL+ +FSAFEKHQYY LKDL+ IT+QPV +LK IL+++ N+K HKNT+ELKPEYRHY KSD
Sbjct: 6 ELDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKTQGRTEVSFTLNEDLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSS----------DKLSLEGIVVQRAECRPAASENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKKEDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGVQNVKGIHKNTWELKPEYRHYQGEEKSD 249 The following BLAST results are available for this feature:
BLAST of TCONS_00050113 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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