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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050077 ID=TCONS_00050077|Name=TCONS_00050077|organism=Clytia hemisphaerica|type=transcript|length=2961bpRun BLAST on NCBI protein sequence of TCONS_00050077-protein >TCONS_00050077-protein ID=TCONS_00050077-protein|Name=TCONS_00050077-protein|organism=Clytia hemisphaerica|type=polypeptide|length=950bp MADEDLKKSHRARQSGPKAEKKKSGKHEPDRKRNPKAFAIQSVNKVAKQVRun BLAST on NCBI transcript from alignment at scaffold_167:850639..864332- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00050077 ID=TCONS_00050077|Name=TCONS_00050077|organism=Clytia hemisphaerica|type=transcript|length=13694bp|location=Sequence derived from alignment at scaffold_167:850639..864332- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_167:850639..864332- >TCONS_00050077 ID=TCONS_00050077|Name=TCONS_00050077|organism=Clytia hemisphaerica|type=CDS|length=57000bp|location=Sequence derived from alignment at scaffold_167:850639..864332- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00050077 vs. Swiss-Prot (Human)
Match: BMS1 (Ribosome biogenesis protein BMS1 homolog OS=Homo sapiens GN=BMS1 PE=1 SV=1) HSP 1 Score: 469.159 bits (1206), Expect = 2.739e-145 Identity = 258/446 (57.85%), Postives = 332/446 (74.44%), Query Frame = 1
Query: 130 KKSHRARQSGPKAEKKKS--------GKHEPDRKRNPKAFAIQSVNKVAKQVHRSLDKETSKHHVPLVDRTXXXXXXXXXXXXXXXXXXXTTLINNMIKSYTREKISDLKGPVTIVSGKSRRLTLMECNNDINSMIDIAKVADLVLLLIDASFGFEMEIFEFLNIAQVHGFPKIMGVLTHXXXXXXXXXXXXXXXXXXQRFWTEVYQGAKLFYLTNITHGLYPKSEIHNLGRFISVMKFRPLMWRSSHPYVVVDRYEDLTDPEQVEKDDTCNRTVSLYGYMRGAHLKYNSKIHLIGCGDYNIQSVHGLPDPCPLPDKVKKRSLSEKERLIYAPMSGVGGIVYDKDAVYIDLGGSKAGQRXXXXXXXLSGKTPAAAISEEPENELISSLHSTQTFIDSKMEASELSIFKNSAPVTADTFKSDSHWTMPEEEEEIDQSDGRKRRRAVF 1443
+K HR + SGPKA KKK G E RKRNPKAFA+QS ++A+ HR+ D +T KHH+P+VDRT +EPPP+VV V+GPPKVGK+TLI +I+++TR+K+++++GPVTIVSGK RRLT++EC DIN MID+AKVADLVL+LIDASFGFEME FEFLNI QVHGFPKIMGVLTHLD K NK LKK KK LK RFWTEVY GAKLFYL+ + HG Y EIHNLGRFI+VMKFRPL W++SHPY++ DR EDLT+PE + + C+R VSLYGY+RGAHLK S+IH+ G GD+ + + LPDPC LP++ KKR L+EKE+L+YAP+SGVGG++YDKDAVY+DLGGS Q P +EL+ SL ST + ID+KM +S +++F +S P+ ++ + MP+EE+++D + GR RR+A+F
Sbjct: 6 QKKHRKKNSGPKAAKKKKRLLQDLQLGDEEDARKRNPKAFAVQSAVRMARSFHRTQDLKTKKHHIPVVDRTPLEPPPIVVVVMGPPKVGKSTLIQCLIRNFTRQKLTEIRGPVTIVSGKKRRLTIIECGCDINMMIDLAKVADLVLMLIDASFGFEMETFEFLNICQVHGFPKIMGVLTHLDSFKHNKQLKKTKKRLKHRFWTEVYPGAKLFYLSGMVHGEYQNQEIHNLGRFITVMKFRPLTWQTSHPYILADRMEDLTNPEDIRTNIKCDRKVSLYGYLRGAHLKNKSQIHMPGVGDFAVSDISFLPDPCALPEQQKKRCLNEKEKLVYAPLSGVGGVLYDKDAVYVDLGGSHVFQDEVG-----------------PTHELVQSLISTHSTIDAKMASSRVTLFSDSKPLGSEDI-DNQGLMMPKEEKQMDLNTGRMRRKAIF 433 HSP 2 Score: 343.969 bits (881), Expect = 5.925e-100 Identity = 220/415 (53.01%), Postives = 295/415 (71.08%), Query Frame = 1
Query: 1714 NLWKNIAEMINNKSDRQTDIRKVVYGQDLAVXXXXXXXXXXXLVAGIFQTQXXXXXXXXXALYHSRDCSKTDIGKDALDVAIDEIKELIKDCFVTGKWEESEDAEALLNEAEGDEDEDLYGDFEDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPEEFTGXXXXXXXXXXXXXXXXXXMFNADYDDEKGANTFYDDLKNTMTEQADLNRKEFENMDDNVRVQYEGFRAGMYVRIELSGMPCELVKNFDPTYPVIIGGLLPGEDNIGYIQTRFKKHRWFDKILKNRDPLIVSLGWRRFQTMPLYSVQDHNGRFRSLKYTPQHLHCIATMYGPVTPPSTGLLAIQSVADKTAKFRIAATGXXXXXXXXXXXXXXXXXXXXXXXIFKNTAFVKGMFNTALEVAKFEGASIRTVSG 2958
+L + AE + ++RK++YG + +NE+ + D + + G+F+ + + K A S DCS+ + + D ++E+ I+DCFVTGKWE+ +DA +L E DE+LYGDFEDLETG+ H+G+ G ++E + + + P+E +++ ++ +KK+KLKEMF+A+YD+ G +T++DDLK M +QA LNR EFE+ DD RVQYEGFR GMYVRIE+ +PCE V+NFDP YP+I+GGL E N+GY+Q R KKHRW+ KILK+RDP+I S+GWRRFQT+PLY ++DHNGR R LKYTPQH+HC A +GP+TP TG LAIQSV+ FRIAATGVV+DLDKSIK+VKKLKL G P KIFKNT+F+KGMFN+ALEVAKFEGA IRTVSG
Sbjct: 670 DLSRKAAEAFLRQQQAAPNLRKLIYGT-VTEDNEEEDDDTLEELGGLFRVNQPDRECKHKA--DSLDCSRFLV-EAPHDWDLEEVMNSIRDCFVTGKWEDDKDAAKVLAE-----DEELYGDFEDLETGDVHKGKSGPNTQNEDIEKEVKEEID---PDE----EESAKKKHLDKKRKLKEMFDAEYDE--GESTYFDDLKGEMQKQAQLNRAEFEDQDDEARVQYEGFRPGMYVRIEIENVPCEFVQNFDPHYPIILGGLGNSEGNVGYVQMRLKKHRWYKKILKSRDPIIFSVGWRRFQTIPLYYIEDHNGRQRLLKYTPQHMHCGAAFWGPITPQGTGFLAIQSVSGIMPDFRIAATGVVLDLDKSIKIVKKLKLTGFPYKIFKNTSFIKGMFNSALEVAKFEGAVIRTVSG 1066 The following BLAST results are available for this feature:
BLAST of TCONS_00050077 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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