TCONS_00050020 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050020
Unique NameTCONS_00050020
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1328

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050020 ID=TCONS_00050020|Name=TCONS_00050020|organism=Clytia hemisphaerica|type=transcript|length=1328bp
AAAGAATTAAGATttaacaacaataacaacaacaacgaaAAATTTTCCAG
TAAAGACAACGCATCCATGacaactaatgataaaatcaaaaGGGATCATT
TGGATGTTTTGCTTCGAGAATTTCAAGACGTAATGAACGAATATAATCGA
GTGCAGTTGGTTCATAGAGACCAATGTAAATCAAGGATCAAAAGACAATT
TATGCTGATTGATCGATCAGTTGATAATGAAAAGATCGAAGAAATGCTGG
AACAAGGAAACCTTTCTGTTTTCCACCAAGATATAGCATTCGAAGATATC
GAGAAAGCAAACAAATCGCTTCAAATCGTAGAAGAGAGGCATGCGGATAT
TTTAAAGCTTGAACAGTCCATAAAGgATTTGTTcgaaattttccaagaaa
ttgCAACACTTGTAGACTCACAGAGTGAAATGATCGACAATATTCAACGG
AACGTTCAAGAAACAATGCTCAAAGTTGAAGAAACCAAAAAAACACTCAA
AATTGCCAGACGATATCGTTCACGaactattttcagtttttgttgtCCAG
TATTTTTACGTAAATCCATGTGTTGTAATATACTTTGATCACGTGGTTTT
TAGTTGAAAAAGATTGGCACTGGACCGTGTTTCAGAGGGTACTAGGtatc
acagatttctgtaaagctcgaagggctagatgtcgtgctttaagctttcc
caagcaaaaaaaatgaatatcacAAGAAATAtagttgctattgttttcga
aaatccgcaaagcttctgattggtcaagcgctgaaattctatagtaatgt
cacgtgacctaggtaggatttgcTAGCTAACCATGTCACACTTTTCAGTC
AAAGCaccaaatctagcccttcgtgctttataaatctgtgcaAGGTAAAC
CAGGTTTGTGAAGTATAAGGTATGGACTGAATTATTTAGAAACTGCCTTA
ACTTTGAGTGGAGAAGGACAGTATCCCAGATAATTTTTGTAGATTATCAT
AATATTTTATATTGTTATAGACCCACTAACTGAATACAGCATTTCTCAGG
CTTGAACAAGTGAAACCATGAacactttttctttgttttgtatccatttt
caaaatctggcgTTCGTAAGAAAACAAAACACATGTCAGTGGACGGGGAA
GCATATTTGATAGGATTTATCACAACAGTTACGATTATCATTTGAATTGT
atataagaattttttaaagaatttgttACTTTGATTGACTGTATTTTTTA
TCGTCTTcaacttcattttcaaaattttccaataatttatcaaaattcga
aatttttacCTGCTTACAATGCTACAAC
Run BLAST on NCBI

protein sequence of TCONS_00050020-protein

>TCONS_00050020-protein ID=TCONS_00050020-protein|Name=TCONS_00050020-protein|organism=Clytia hemisphaerica|type=polypeptide|length=195bp
KELRFNNNNNNNEKFSSKDNASMTTNDKIKRDHLDVLLREFQDVMNEYNR
VQLVHRDQCKSRIKRQFMLIDRSVDNEKIEEMLEQGNLSVFHQDIAFEDI
EKANKSLQIVEERHADILKLEQSIKDLFEIFQEIATLVDSQSEMIDNIQR
NVQETMLKVEETKKTLKIARRYRSRTIFSFCCPVFLRKSMCCNIL
Run BLAST on NCBI

transcript from alignment at scaffold_167:198820..203105-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050020 ID=TCONS_00050020|Name=TCONS_00050020|organism=Clytia hemisphaerica|type=transcript|length=4286bp|location=Sequence derived from alignment at scaffold_167:198820..203105- (Clytia hemisphaerica)
AAAGAATTAAGATTTAACAACAATAACAACAACAACGAAAAATTTTCCAG
TAAAGACAACGCATCCATGACAACTAATGATAAAATCAAAAGGGATCATG
TAAGAATAGTTCTTCTCTCAAAGGTGTTTTGCTTGCTGATTATATTGGGT
GTCTTAACATAAGTACACCCCCTTCCTCACAGACTCACTGGGAACCCTTC
CCACTGGAAAAATTGGCCAAAATATCGTCCCCGGTGGGAAATTATTCTGT
GCCCACTGAAAATAATCAAATAAACCAATCTTCACTGCAAAATATTATGC
TATTTTTCCCATCCCACTGAATTTTCTGACTTGAAAACAAAAGAATTGAA
ATCCCCAGCCATAAAAAGTATGGGAGTATCAATCATCATCGAGGTTGAGT
CCGTTATTTTCATCCCAACTGGTTGAAAAAATCGTACCGGGTCTGTGAGA
AGGGGTATAAAACTGAAGCGCATTTGTCAAAATTTACCACAAGAATGAAC
CACGGAGGAAAATTTCTATACGTTTTTTGATAAGAACATCAACAATTTTT
TAAGCCTTTGGATGTTCTCCTTTGAGTGTTTTTAAAATGTTTTATTTTTT
CGATTATTGAGAGAATTAAGTTGGGTTTTTTAGACTCGGTGAAGTCTTGA
AATGTTCTTAACTTGTTCTTAATATTTAGGCCATTAAAGCCTTATGTTCT
CATAGTTTATTCTCATGAAAAGCAAAACACTTGAATTTTCTCATGTTCTT
CTCGCTCACTCGCAGTTGGATGTTTTGCTTCGAGAATTTCAAGACGTAAT
GAACGAATATAATCGAGTGCAGTTGGTTCATAGAGACCAATGTAAATCAA
GGATCAAAAGACAATTTATGCTGAGTAAGTCTTGGTAGGGAAGGAATATT
GTACGGTTAGGTCACAAGTGAAAACCTACTGTTACAGTTGACTCTCGCTA
AGTCTAAAGTCTATTACCTTATCGGGGAAAACTTCGTCGGGGAGAAGTGA
CGAAATTTTGGACAAGTGACGAATATTTTCCCCGGCCTTAATGCGTTTGC
CAACTACCAGCAAGTGACGAACTTTTCCCCGACGAAAATTTTCCACTTTG
ATTCGAATCTTTCCGTAAATCGAACAAATTAGAATTCCCGTTCGATTCCA
AATCAGTGAGAGTCAACTTTCCCTACTAGTCATACAACAATAAATCTATT
GTTCTCAAAGCCCCCGCTCATGTTATGTTTAAGTAGCAAACAAATTCAGC
TTTCAATTCTCGTCTCTTTTTTCAGTTGATCGATCAGTTGATAATGAAAA
GATCGAAGAAATGCTGGAACAAGGAAACCTTTCTGTTTTCCACCAAGATA
TAGTAAGCTAACACTTCTTTTCATTTACTTATTTAAGGTGTCATCAACTC
TCGACAAAAGCTTTTAAATTAAATTCTTGGAGCATGTCAAGCAGACAATA
TCTCAAAAGATTTCTAATCTTCGACCAGATCTTGATTAAAGGTTTTGTTT
TTAAATAAGAGTTATATCGTTTGCTTACTCATCACTTTTAATTCACAAGT
TTTTTCACATTGGATTGACACGGATGTGGAGCAAGATTGGTCAGAAAAAG
GAAAAGAAAAACAATTTTTTGCTTATATCAGCATAATATAACAATAGGTA
GACATTGTCCTGATATGAAATATGTGTCTGATATGAAACGGGAACACTTA
TGAAAAATAAAATCTTTAATCTGCGCTGGTAAATGTGCACTCTAAAGGCC
ATGCTTCCGTAAGAGAAACTGTACAGTTTTTTTCATCCAGACTTGAGGTG
AATATTATAAATGAGCTTTTTGAGCGGTGATTGGTGAAAACAAACACTAC
AATCAAGTGCCAAGCATAAACATTAGAACGCTTTTGCTTCGTAAAAATTT
ATACAGTTTTGAATGTTTTGCCTAAAAACCAGGTCAGATCATCGTCATAT
TCGCCATATCCCTTTAGAGCAGAACGTGGCATGCGCAGATCGGATGATCT
GTTACGAGATTAGATATTTTTAGCCCATCTTTGTCCTAACTTTTGATGAG
CTGACATCTTAATAGGCCTTTGGAACCGCACATACAGTACCAGCATGATT
TAAATTTTGATTTTCAACAGGCATTCGAAGATATCGAGAAAGCAAACAAA
TCGCTTCAAATCGTAGAAGAGAGGCATGCGGATATTTTAAAGCTTGAACA
GTCCATAAAGGTAAGTTTTGTTACCTTCAGGGAACTAATTTTGGCGAAAG
ATTGGTTCCTTTTCCCCTTAAAATGAGTGTTGTAGTAAAAAATTAAGAGG
TCATTTCAGAAAATGATAGCAAACTTAATTTTGGCAAAGGAACTTATTTT
ATTTTATTCTACTTCTTGTGATGTTTTTTTGTTCACCAGTCAATACTAGT
ACTACCCTTGCGAATATTACACATTTAAAACTAAGGGTAGACCTTAGTAT
CGAAATCCCTTCCTATGTTTAGGATGATAGGTTCACCCCATTTAGTCTTG
GTCCTTGATAGGAGGGCATAAAATAGAGCATAAAAAGGGGAAGCCTAGGG
GAAGCAAAGAGTTACTTTAGACAAGTATCTTGAAATTAAACAAACACTTT
TAAAACTTTTTAGGATTTGTTCGAAATTTTCCAAGAAATTGCAACACTTG
TAGACTCACAGGTAACAACTTGAATTATTTTTAATAAGTTTGTGTCCAAC
TTTTCAAATATTTTGAATTTGAATTAATAGTATTGATTTTGAAAATACAC
ACTAGAGGGCTCCTCTTTCAATATCTATCTACCCAAAGGTAGGGGAGAGC
GCCCCACTCTTTCTCTCTGCTCCAATCCTTTCCAGAAGAAGAGATGTAAA
GTCAAGCCTGTTTCAGAACATAAGTTTAACCATAACCCTTTCGCTAGTTT
TCGCCGTCTTTCAAGTTCAATCAAAAAAATCGTTAAGGAATCCTAATTTG
AGGTCAATAGCACCTATTCTAAGGTATTCACTTATGAATTTTAGTTGACC
TATACCTTAAGGTTTCAGGACTCAGTTGTGACGTAATTAAATGTCGACCG
AAAAAATTTATAATTAAGGAAAATGTGAATTAAGACGTCATCAAATTATA
ACGTCATAAATTGTAAAAGGGCTGTAACTTCAAAAGTATATGTTGAATCT
TTGTCAATGGCTAACTTTCTAAGCTAAAGTTTTTTGAAAATTTTGATGAC
ATCAGCAAAAACTACAAAAAAATCGAAAAATGCCATTTTTTGCTGACTTC
AAGGTATAGAGGAACTTTTGAGCCCTAAGTGGATCTCTGAATATGGCTGC
TATTAATCTCAAAAACTTAGGGTAAATTGTTAGGAAGGCTTTCCTAAGTC
ACACGAGTTTATTTATCGAGTTTATTTCTAGAGTGAAATGATCGACAATA
TTCAACGGAACGTTCAAGAAACAATGCTCAAAGTTGAAGAAACCAAAAAA
ACACTCAAAATTGCCAGACGATATCGTTCACGAACTATTTTCAGTTTTTG
TTGTCCAGTATTTTTACGTAAATCCATGTGTTGTAATATACTTTGATCAC
GTGGTTTTTAGTTGAAAAAGATTGGCACTGGACCGTGTTTCAGAGGGTAC
TAGGTATCACAGATTTCTGTAAAGCTCGAAGGGCTAGATGTCGTGCTTTA
AGCTTTCCCAAGCAAAAAAAATGAATATCACAAGAAATATAGTTGCTATT
GTTTTCGAAAATCCGCAAAGCTTCTGATTGGTCAAGCGCTGAAATTCTAT
AGTAATGTCACGTGACCTAGGTAGGATTTGCTAGCTAACCATGTCACACT
TTTCAGTCAAAGCACCAAATCTAGCCCTTCGTGCTTTATAAATCTGTGCA
AGGTAAACCAGGTTTGTGAAGTATAAGGTATGGACTGAATTATTTAGAAA
CTGCCTTAACTTTGAGTGGAGAAGGACAGTATCCCAGATAATTTTTGTAG
ATTATCATAATATTTTATATTGTTATAGACCCACTAACTGAATACAGCAT
TTCTCAGGCTTGAACAAGTGAAACCATGAACACTTTTTCTTTGTTTTGTA
TCCATTTTCAAAATCTGGCGTTCGTAAGAAAACAAAACACATGTCAGTGG
ACGGGGAAGCATATTTGATAGGATTTATCACAACAGTTACGATTATCATT
TGAATTGTATATAAGAATTTTTTAAAGAATTTGTTACTTTGATTGACTGT
ATTTTTTATCGTCTTCAACTTCATTTTCAAAATTTTCCAATAATTTATCA
AAATTCGAAATTTTTACCTGCTTACAATGCTACAAC

Coding sequence (CDS) from alignment at scaffold_167:198820..203105-

>TCONS_00050020 ID=TCONS_00050020|Name=TCONS_00050020|organism=Clytia hemisphaerica|type=CDS|length=3528bp|location=Sequence derived from alignment at scaffold_167:198820..203105- (Clytia hemisphaerica)
AGTGAAATGATCGACAATATTCAACGGAACGTTCAAGAAACAATGCTCAA
AGTTGAAGAAACCAAAAAAACACTCAAAATTGCCAGACGATATCGTTCAC
GAACTATTTTCAGTTTTTGTTGTCCAGTATTTTTACGTAAATCCATGTGT
TGTAATATACTTTGAGATTTGTTCGAAATTTTCCAAGAAATTGCAACACT
TGTAGACTCACAGGCATTCGAAGATATCGAGAAAGCAAACAAATCGCTTC
AAATCGTAGAAGAGAGGCATGCGGATATTTTAAAGCTTGAACAGTCCATA
AAGTTGATCGATCAGTTGATAATGAAAAGATCGAAGAAATGCTGGAACAA
GGAAACCTTTCTGTTTTCCACCAAGATATATTGGATGTTTTGCTTCGAGA
ATTTCAAGACGTAATGAACGAATATAATCGAGTGCAGTTGGTTCATAGAG
ACCAATGTAAATCAAGGATCAAAAGACAATTTATGCTGAAAAGAATTAAG
ATTTAACAACAATAACAACAACAACGAAAAATTTTCCAGTAAAGACAACG
CATCCATGACAACTAATGATAAAATCAAAAGGGATCATAGTGAAATGATC
GACAATATTCAACGGAACGTTCAAGAAACAATGCTCAAAGTTGAAGAAAC
CAAAAAAACACTCAAAATTGCCAGACGATATCGTTCACGAACTATTTTCA
GTTTTTGTTGTCCAGTATTTTTACGTAAATCCATGTGTTGTAATATACTT
TGAGATTTGTTCGAAATTTTCCAAGAAATTGCAACACTTGTAGACTCACA
GGCATTCGAAGATATCGAGAAAGCAAACAAATCGCTTCAAATCGTAGAAG
AGAGGCATGCGGATATTTTAAAGCTTGAACAGTCCATAAAGTTGATCGAT
CAGTTGATAATGAAAAGATCGAAGAAATGCTGGAACAAGGAAACCTTTCT
GTTTTCCACCAAGATATATTGGATGTTTTGCTTCGAGAATTTCAAGACGT
AATGAACGAATATAATCGAGTGCAGTTGGTTCATAGAGACCAATGTAAAT
CAAGGATCAAAAGACAATTTATGCTGAAAAGAATTAAGATTTAACAACAA
TAACAACAACAACGAAAAATTTTCCAGTAAAGACAACGCATCCATGACAA
CTAATGATAAAATCAAAAGGGATCATAGTGAAATGATCGACAATATTCAA
CGGAACGTTCAAGAAACAATGCTCAAAGTTGAAGAAACCAAAAAAACACT
CAAAATTGCCAGACGATATCGTTCACGAACTATTTTCAGTTTTTGTTGTC
CAGTATTTTTACGTAAATCCATGTGTTGTAATATACTTTGAGATTTGTTC
GAAATTTTCCAAGAAATTGCAACACTTGTAGACTCACAGGCATTCGAAGA
TATCGAGAAAGCAAACAAATCGCTTCAAATCGTAGAAGAGAGGCATGCGG
ATATTTTAAAGCTTGAACAGTCCATAAAGTTGATCGATCAGTTGATAATG
AAAAGATCGAAGAAATGCTGGAACAAGGAAACCTTTCTGTTTTCCACCAA
GATATATTGGATGTTTTGCTTCGAGAATTTCAAGACGTAATGAACGAATA
TAATCGAGTGCAGTTGGTTCATAGAGACCAATGTAAATCAAGGATCAAAA
GACAATTTATGCTGAAAAGAATTAAGATTTAACAACAATAACAACAACAA
CGAAAAATTTTCCAGTAAAGACAACGCATCCATGACAACTAATGATAAAA
TCAAAAGGGATCATAGTGAAATGATCGACAATATTCAACGGAACGTTCAA
GAAACAATGCTCAAAGTTGAAGAAACCAAAAAAACACTCAAAATTGCCAG
ACGATATCGTTCACGAACTATTTTCAGTTTTTGTTGTCCAGTATTTTTAC
GTAAATCCATGTGTTGTAATATACTTTGAGATTTGTTCGAAATTTTCCAA
GAAATTGCAACACTTGTAGACTCACAGGCATTCGAAGATATCGAGAAAGC
AAACAAATCGCTTCAAATCGTAGAAGAGAGGCATGCGGATATTTTAAAGC
TTGAACAGTCCATAAAGTTGATCGATCAGTTGATAATGAAAAGATCGAAG
AAATGCTGGAACAAGGAAACCTTTCTGTTTTCCACCAAGATATATTGGAT
GTTTTGCTTCGAGAATTTCAAGACGTAATGAACGAATATAATCGAGTGCA
GTTGGTTCATAGAGACCAATGTAAATCAAGGATCAAAAGACAATTTATGC
TGAAAAGAATTAAGATTTAACAACAATAACAACAACAACGAAAAATTTTC
CAGTAAAGACAACGCATCCATGACAACTAATGATAAAATCAAAAGGGATC
ATAGTGAAATGATCGACAATATTCAACGGAACGTTCAAGAAACAATGCTC
AAAGTTGAAGAAACCAAAAAAACACTCAAAATTGCCAGACGATATCGTTC
ACGAACTATTTTCAGTTTTTGTTGTCCAGTATTTTTACGTAAATCCATGT
GTTGTAATATACTTTGAGATTTGTTCGAAATTTTCCAAGAAATTGCAACA
CTTGTAGACTCACAGGCATTCGAAGATATCGAGAAAGCAAACAAATCGCT
TCAAATCGTAGAAGAGAGGCATGCGGATATTTTAAAGCTTGAACAGTCCA
TAAAGTTGATCGATCAGTTGATAATGAAAAGATCGAAGAAATGCTGGAAC
AAGGAAACCTTTCTGTTTTCCACCAAGATATATTGGATGTTTTGCTTCGA
GAATTTCAAGACGTAATGAACGAATATAATCGAGTGCAGTTGGTTCATAG
AGACCAATGTAAATCAAGGATCAAAAGACAATTTATGCTGAAAAGAATTA
AGATTTAACAACAATAACAACAACAACGAAAAATTTTCCAGTAAAGACAA
CGCATCCATGACAACTAATGATAAAATCAAAAGGGATCATAGTGAAATGA
TCGACAATATTCAACGGAACGTTCAAGAAACAATGCTCAAAGTTGAAGAA
ACCAAAAAAACACTCAAAATTGCCAGACGATATCGTTCACGAACTATTTT
CAGTTTTTGTTGTCCAGTATTTTTACGTAAATCCATGTGTTGTAATATAC
TTTGAGATTTGTTCGAAATTTTCCAAGAAATTGCAACACTTGTAGACTCA
CAGGCATTCGAAGATATCGAGAAAGCAAACAAATCGCTTCAAATCGTAGA
AGAGAGGCATGCGGATATTTTAAAGCTTGAACAGTCCATAAAGTTGATCG
ATCAGTTGATAATGAAAAGATCGAAGAAATGCTGGAACAAGGAAACCTTT
CTGTTTTCCACCAAGATATATTGGATGTTTTGCTTCGAGAATTTCAAGAC
GTAATGAACGAATATAATCGAGTGCAGTTGGTTCATAGAGACCAATGTAA
ATCAAGGATCAAAAGACAATTTATGCTGAAAAGAATTAAGATTTAACAAC
AATAACAACAACAACGAAAAATTTTCCAGTAAAGACAACGCATCCATGAC
AACTAATGATAAAATCAAAAGGGATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031687XLOC_031687Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050020-proteinTCONS_00050020-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050020-exon-scaffold_167-1575043694:203007..203105TCONS_00050020-exon-scaffold_167-1575043694:203007..203105Clytia hemisphaericaexon
TCONS_00050020-exon-scaffold_167-1575043694:202232..202340TCONS_00050020-exon-scaffold_167-1575043694:202232..202340Clytia hemisphaericaexon
TCONS_00050020-exon-scaffold_167-1575043694:201754..201830TCONS_00050020-exon-scaffold_167-1575043694:201754..201830Clytia hemisphaericaexon
TCONS_00050020-exon-scaffold_167-1575043694:200896..200985TCONS_00050020-exon-scaffold_167-1575043694:200896..200985Clytia hemisphaericaexon
TCONS_00050020-exon-scaffold_167-1575043694:200445..200492TCONS_00050020-exon-scaffold_167-1575043694:200445..200492Clytia hemisphaericaexon
TCONS_00050020-exon-scaffold_167-1575043694:198820..199724TCONS_00050020-exon-scaffold_167-1575043694:198820..199724Clytia hemisphaericaexon
TCONS_00050020-exon-scaffold_167-1510915933:203007..203105TCONS_00050020-exon-scaffold_167-1510915933:203007..203105Clytia hemisphaericaexon
TCONS_00050020-exon-scaffold_167-1510915933:202232..202340TCONS_00050020-exon-scaffold_167-1510915933:202232..202340Clytia hemisphaericaexon
TCONS_00050020-exon-scaffold_167-1510915933:201754..201830TCONS_00050020-exon-scaffold_167-1510915933:201754..201830Clytia hemisphaericaexon
TCONS_00050020-exon-scaffold_167-1510915933:200896..200985TCONS_00050020-exon-scaffold_167-1510915933:200896..200985Clytia hemisphaericaexon
TCONS_00050020-exon-scaffold_167-1510915933:200445..200492TCONS_00050020-exon-scaffold_167-1510915933:200445..200492Clytia hemisphaericaexon
TCONS_00050020-exon-scaffold_167-1510915933:198820..199724TCONS_00050020-exon-scaffold_167-1510915933:198820..199724Clytia hemisphaericaexon
TCONS_00050020-exon-scaffold_167-1491911889:203007..203105TCONS_00050020-exon-scaffold_167-1491911889:203007..203105Clytia hemisphaericaexon
TCONS_00050020-exon-scaffold_167-1491911889:202232..202340TCONS_00050020-exon-scaffold_167-1491911889:202232..202340Clytia hemisphaericaexon
TCONS_00050020-exon-scaffold_167-1491911889:201754..201830TCONS_00050020-exon-scaffold_167-1491911889:201754..201830Clytia hemisphaericaexon
TCONS_00050020-exon-scaffold_167-1491911889:200896..200985TCONS_00050020-exon-scaffold_167-1491911889:200896..200985Clytia hemisphaericaexon
TCONS_00050020-exon-scaffold_167-1491911889:200445..200492TCONS_00050020-exon-scaffold_167-1491911889:200445..200492Clytia hemisphaericaexon
TCONS_00050020-exon-scaffold_167-1491911889:198820..199724TCONS_00050020-exon-scaffold_167-1491911889:198820..199724Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:198820..203105 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.40957	1.97721	1.179	1.18942	0.684093	0.709861	3.54626	3.93053	6.49597	4.5007	0.738789	3.96967	6.59989	7.56975	6.91318	7.57346	0.452214	0.829429	1.31442	1.86919	0.766352	0.608525	0.617987	0.826235	1.25948	0.78988	0.0869473	0.0463963	0.44537	0.286824
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000727T_SNARE_dom
IPR006011Syntaxin_N
IPR010989SNARE
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0016192vesicle-mediated transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0016020 membrane
Blast
[Close]
BLAST of TCONS_00050020 vs. Swiss-Prot (Human)
Match: STX1B (Syntaxin-1B OS=Homo sapiens GN=STX1B PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.490e-30
Identity = 68/177 (38.42%), Postives = 107/177 (60.45%), Query Frame = 1 
Query:   82 KIKRDHLDVLLREFQDVMNEYNRVQLVHRDQCKSRIKRQFMLIDRSVDNEKIEEMLEQGNLSVFHQDIAFEDIEKANKSLQIVEERHADILKLEQSIKDLFEIFQEIATLVDSQSEMIDNIQRNVQETMLKVE----ETKKTLKIARRYRSRTIFSFCCPVFLRKSMCCNIL*SRGF 600
            +I++     L R+F +VM EYN  Q  +RD+CK RI+RQ  +  R+  NE++E+MLE G L++F  DI   D +   ++L  +E RH +I+KLE SI++L ++F ++A LV+SQ EMID I+ NV+ ++  VE    +TKK +K   + R + I    C V L   +  +I  + G 
Sbjct:  113 RIRKTQHSTLSRKFVEVMTEYNATQSKYRDRCKDRIQRQLEITGRTTTNEELEDMLESGKLAIFTDDIKM-DSQMTKQALNEIETRHNEIIKLETSIRELHDMFVDMAMLVESQGEMIDRIEYNVEHSVDYVERAVSDTKKAVKYQSKARRKKIMIIICCVVLGVVLASSIGGTLGL 288
The following BLAST results are available for this feature:
BLAST of TCONS_00050020 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
STX1B2.490e-3038.42Syntaxin-1B OS=Homo sapiens GN=STX1B PE=1 SV=1[more]
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