TCONS_00050019 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050019
Unique NameTCONS_00050019
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2073

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050019 ID=TCONS_00050019|Name=TCONS_00050019|organism=Clytia hemisphaerica|type=transcript|length=2073bp
AAAACGTCGAGTTGTAGAGGGTCAACTGTACTGTAAGCTAGCAAAAGCAT
GTCAAGTTTATAATGACATCTTGCCAAGTCTcatagaatttatttattat
tgtcGAACTTTcagataaacaaaaacaaaataacacAAACAAAAGGTACA
AGATACAAATAAAGCATTTCTTCTACGACGACCAAGCAAGTGAATAAAGC
AAGGAAGTGTATAATTTGAATGGTCACTGCAACAAAAGAGATACTGTAGG
AAGAAAACCTATACGAATTGATGAATAATGGTTTGGTTGAAGATTGTGTT
GTTCTTGATTCTCGTTCAAACTGTTAGTAGTCATTGGTGGTTGAGCTCTC
AAGTTTTCACCGTCGGATCAAATGGAGGTTGCAATAACATAGCTGGTTTA
GTGAAAGAACAAAAATCACTATGtcgaaaatatccaaaaatgatgGAGGT
TGTTGGACAAGGAGCTAAGCTAGGTTTGCAAGAATGTCAGCACCAGTTTG
CAACTTCAAAATGGAACTGTTCACATTTGGATCAACGAAAGAAAGGATTA
CTTGGCCTGCTCACCAGTAAAGGTAACCGTGAAGCAGCATTCTTTCAAGC
GATAACGTCAGCCGGTGTAGTCTACAAAGTGACTCGAGCGTGCAACAATA
ATAAATATTCTGCCATATGCACTTGTGAGAAAAGACATGGACCCATACCC
CTACAGAACAATCAGCCactcaaaaaaggtgaaaagAGACCATCTTTCAA
ATGGTTCTATTGCAATGATAATATCAATTTTGGAATGAAGTTTGCGGAGA
ACTTTTTGGACGCGCGGGAAGTTGGGAATGATGCGCGTGTCCTGATGAAT
AAGCAGAACAACTTAGCTGGTAGAGCGGTTGTTAAATCCTTAATGACGTT
TGAATGTACGTGCCACGGTGTATCTGGAGCGTGCAACGTCAAGACATGCC
GGAACTCGTTACCAAATTTTTACCGAGTTGGGGATTACCTTCAACAACAG
TATCACGGTGCGATATTCGTGACGTTGGATCAAGTCCGGAACATAATTAC
ACCACGGAATCCGGGCGTCAAAGAACACAGTCCTAAGGATTTAGTTTATT
TAGAAGAATCGCCAGACTATTGTGAGGTCAATATCAAGGAAGGTACTTTA
GGCGTGGCAGGTCGCAGGTGTAACAAGACATCACCGGGTCCTGATGGTTG
TTCTGTGATGTGTTGTGGTATGGGACATCATACCAAAAAGGTTTGGGTGG
AATCGAATTGCGACTGTACGTTTATCTGGTGTTGCAAAGTTCAATGTCAA
AAATGTCGGTCTCTTCAACAACAACATTTCTGCCGTGCTAagaagaagag
aagaaaaaacaaaaacaaaagacgCCGGAAGAACCGTAACGGAAACCACC
AAATACAACGGGACGAACCGTCAAACCATATCATGGATAGGAAAAAACGA
TCAGTAATGTTACGCGAATACCTAACCTAAAGAGGTGGCTACAAGTAGAG
AAATAAGGAGACGAAAAGGAAAAAGTGGGTGTGCTCAGAGCCTTAGTGTT
GGCCGGCAACGTGTAAACAATGACTTTCATTCTTTCCGGGAATTTGGCCC
CCTGATGAATTTCCCACGTAGAAAGCGGTTACACAAAACATCCGATTGAA
TAAACGAGACTAAGAGAAGGAAATTTGTGGTTAACAAAGACAAAGATAAT
GACTTAACCAAAAAGGCATAAAAATGACATTATAATAATGACAAAATAAT
CTTAAAATATTCGATGTTAATAGTTTTGATTTGAATATTCGATGGAGACG
TGAACAAATTGTAAATAATATATAGTTGTTCTGGATGATGAACTTTAGAT
TTACTAGATACTTGGTGaataaaaaaacgtaaaagattttaaccctgata
ttttgtaaataatCTAAGATGACTCATGATAAATATTTGTTGGTATAAAA
TACACAAATAACCACAAGAAAATATCTTTGTTATCAGATATCTTTGTTTC
ATGACCCCTTCCAAATAACAGTTTAACAGGAAAAACTGGTAATATTCTCT
TGAGAGACATCACTCCGAGAAAG
Run BLAST on NCBI

protein sequence of unclassified Wnt ligand X1A

>TCONS_00050019-protein ID=TCONS_00050019-protein|Name=unclassified Wnt ligand X1A|organism=Clytia hemisphaerica|type=polypeptide|length=400bp
MVWLKIVLFLILVQTVSSHWWLSSQVFTVGSNGGCNNIAGLVKEQKSLCR
KYPKMMEVVGQGAKLGLQECQHQFATSKWNCSHLDQRKKGLLGLLTSKGN
REAAFFQAITSAGVVYKVTRACNNNKYSAICTCEKRHGPIPLQNNQPLKK
GEKRPSFKWFYCNDNINFGMKFAENFLDAREVGNDARVLMNKQNNLAGRA
VVKSLMTFECTCHGVSGACNVKTCRNSLPNFYRVGDYLQQQYHGAIFVTL
DQVRNIITPRNPGVKEHSPKDLVYLEESPDYCEVNIKEGTLGVAGRRCNK
TSPGPDGCSVMCCGMGHHTKKVWVESNCDCTFIWCCKVQCQKCRSLQQQH
FCRAKKKRRKNKNKRRRKNRNGNHQIQRDEPSNHIMDRKKRSVMLREYLT
Run BLAST on NCBI

transcript from alignment at scaffold_167:174503..183445-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050019 ID=TCONS_00050019|Name=TCONS_00050019|organism=Clytia hemisphaerica|type=transcript|length=8943bp|location=Sequence derived from alignment at scaffold_167:174503..183445- (Clytia hemisphaerica)
AAAACGTCGAGTTGTAGAGGGTCAACTGTACTGTAAGCTAGCAAAAGCAT
GTCAAGTTTATAATGACATCTTGCCAAGTCTCATAGAATTTATTTATTAT
TGTCGAACTTTCAGATAAACAAAAACAAAATAACACAAACAAAAGGTACA
AGATACAAATAAAGCATTTCTTCTACGACGACCAAGCAAGTGAATAAAGC
AAGGAAGTGTATAATTTGAATGGTCACTGCAACAAAAGAGATACTGTAGG
AAGAAAACCTATACGAATTGATGAATAATGGTTTGGTTGAAGATTGTGTT
GTTCTTGATTCTCGTTCAAACTGTTAGTAGTCATTGGTGGTAAGTTGATA
TTTACTTCCGAGATGAGAGAAAGTGAAAAAGAGCACAGATTTAAGACATT
TGATACACTATTTTGTCAATCATCCATAGCGACCTGGACACTCTTGAATA
AGCAATTATCTGCCTCGAATTATCCGGTTCAAAATTTTAGGCTGTAATAC
AGTTGTATTGACAAAAATGAATGGATTGATAGAGTCAGAAATATTTACGA
ATGATATAGTTCAAAGTGAATTCGATATAATCTTTTGCCCTTGATATTAT
GGAGAAAGAAGTTTTGAAATAGTAACAAGAGGTTACGCACACTCAAGCAA
AGTTTAATCTTATTTCGAACAATTTTCTTATCAATATCTGTGTAAAGAGG
GACACCACAGAGACACAGTGGTGTGGTATAGAAGGATCGTACAAAAGAAA
CAGTTGCTTTTTGATTTCTTCTCCTCCTACCTAGTATCAAGGAAATGAAC
AAATTCTCATATCAAAAATCGAAAAGATATACACTTTCTCTTTCTAGGTC
TATAATACAATTAACCTAGACCACCCTAGGCCACTGGCGTATTTTTCTAT
TGATTTGACTTTTATAATGGGCGGGGTTTTCAATGATTCGCGACATGCAC
TTTTGAAAGTCTAGCCTGCTTGATAACGGGAATTTAAAGTTTTTGGCACG
AAAAAACGGAAATCGAAAAAAGCTTTTACAAAACAGGTTTCGGCTTGCTG
TACTTGAGATTTCGACATTATTCCAATTTTTGTTTTCCGTTATAATGCTC
CCAGTACACTTTGTTATTGTTTTGATATCTTTCACGATGAGGTCGGAAAT
AGTTTTCATTTTAACTCCTACCCTAACTTTTAAGGACTTTGTTTACCATT
GGCCATGGATTTTGTAGTAGTGACATCAACAGTATGACAGATTGAGCTTA
CACGGTCAGATTTAATATCAATTTTCATATTTTTCATTATACTTAAAGTT
AAAGTTCTTAAAGTAAAATAAGAGATTAAGGCACGCCTTTAGATAAACCA
AGAATATGTCTGATAAGGATAGTTACTGTACGACCGACCAATCTATTTCA
AAAACAGTTTGTCCTCTCAGTACCTATATTCCTATTGTTTAAAATATATC
AAAGCCTGACGGAAACCAAGATTTGTCGAGTACGATTTCAATCGAGTTAA
AATCTTTCTCAAAAAAACTCATGATTGTGATTTGCGGTCAAAGGACTTGC
GATTGTTTCGGAATGTGGAAAAATACCATAAGGTACAACCCTCTTTATTG
GCACTCGTTTCAAACAACCAATTATATCAATATCTAGATTTGTGATTATT
TGGTAATTTAAGGTCCGTTTTCTATAACTTGAAGACTTAAGGGGTAAACC
AAATTAGTTTGTTAAAGATGTCTCTCTCTGATTCTCCAATCTACTGTATA
GAATATGAGAATCTTTGTGAAGATTTAATCAAGTTCATTCTTGAATAATG
TCCGTTATATCTCCTTTCATTCTAATTTTCGGGCACTTTCTCATGCAGTT
GTTTTAACGTTTTTTAAACAAACAAACAAACAAACAAGCATCGATGATAA
TGTAGGTTTGTAAACACATTCTGGTTTTTTTGAGAGATAGCAAAACTAAT
CTTCGATACAACATCACTTATAAGCACATAGGACTGACAAAAACTAATGA
TTTTGAAGTCACACATGACTTTGGGTGAACGAATAGAAGTTTCCTATAAG
AGTATATCTCTACAGAACAGAGTCAGAAATACCAAAGAATCAACACATCA
ATGGCCTTCAAGCTGTCGAATCCGATTTAACAGAAGTTTAACGGCTATAG
TAGGATTCTTTTAAACGAGGAAATATTCAACCTAAGCCTGCTGATTAAGC
CGGGAAGCTAGTGATCAAGTGATCCATTGAGCTTAAGTCAGATTAAGAGG
CATGCTTCATTAATAACAATTTAATAGAAGGAGAACAAAACCATTTTATG
TGACACTATGGACGAATTAAGTATTTGATATCTATTAGTTAATTGTGTAC
ACTGCATGAGGTCTAAGGGAATATATTGATATGGTTATGATAGTAAATAA
ATGAGACCTATTTAACAAATCTGAATCAATTTATCTGAGAGAGTGTATCA
TGCATTTGTATTGAATAGATACTCGCCAATTTACGCAATGTCCTAGTCTT
TGGCTATTTCGGCTATCGAATATTGACAGTGGATATAAATGATTTTTACT
AACTATAAGAAATCGATATACCTTAAAGGCACTAAAAGAGAAACAAACCC
AAATAGAGGTTTTACCGTTAAAAATAAGCAAGAAGTTGATAATATTTTAG
AGAAAAAACAAATGATTTTTAAATATTAAGTCTAAGCTTAAAATCTTAGA
TCGAGTTCTATTCTTAAAATGTTCTTAAATTTCAGTAACGAAAAAACAAA
CCTTTTAATGAAATTCCAATGAACTGAGTGAATAGAGCTAAGGAGGTCGC
TAGGTGAGAGGATGACAAAACCTCATGAAAAGAGAGGAAATTGAAAAACT
AACAAAATGATATCATCATTTTTTTGTAATTAATACGAGACTCTGCCACA
CATGTGTATAATACAGCACGCGACCACTGACCTTCAAAAAAACTTAAACT
AGATCAAGTTACTCGAATCTTAGTCAAAAATAATTTCTGACAACAATTAC
AAGACGAAGGGAGTTAGCTTTCAGACTGATTGTAGACTGGGAATCCAGTC
GTTTATAACGTTTTTGTTGAAAGCGGGAAATTTTTATGTCGGGATATGAT
TAAAATAAACGACTGGGCTAAGGTGGTTTCCGTAGCTTACGGGAGTTCCA
GCAGGGCCCGCAGATTTCTGCGGGGTGAGAAAACAATCATATACAACAAA
ATATATAAACAAATAAAAATTTCAGCCAATGAGAATTTCTAAGTGAAAGA
AAAAAACAACAAACCAAAACAAACAAACAAGACCCCTGAAAATGTTACCC
AAGAACATGAAAAAAGAGAATTTTTATGAAAAGTTTGTTGTGCACAAAAT
ATTCTAGACGACTATATTGATGCTCCTGTCAAATTTCTACTTCCTATTTT
TTACTGAGTTAAGTCGTCTAGCATGCTAGACTAGACTGATTGCCACTTAA
TGTGGGACAATTTTTCGAAACAAAAACAATGTCTCCAAATAAAGTTTTCT
AGAGAAGGAAATACATGCACGCCAGTCGTGGAGCGATATCATGCGGGAAA
AGTGAGCATAGGAAGAAAATTTGTCGGTGGAAGGGGCGGAAAACTGTTAA
TCAGCACCCTCCCATCAACGTTTGCACGTTCTCCTACGCAGCTCCTATTT
TAACAAACGCCAGGCGCCCTTATGTTCTCGCTCTCCGACGCGATTTTTTC
TAGTTATAAGGGAGAGAGAGAAATCTTTAGGGTGTGGACACTTGTAACTG
TAACGAAGGATAAAAAAAATCACCCACAAAAACATACTTATATTAATGAA
TGATTTCTGTAAAATACCTGTGGATAATTTGTGACCTTAAAAATAGAACA
TCGAAATTACCAACCTCCCACATGAAGGCTCGCCGCAAATCTAAACTTTT
TTGAAATTAGTAGTAACAAAAATTTTGTCGTACATAGAATAACGAGATAT
GCTTCAGTCAAAAACTGCATCAGTAAATAGACGATATTAAAGGAATCTTG
CGAGAAACTTTTTATGCTTAAAATGCTATTCTACCGCCATGACTGCCACC
TCCCCCCCCCTTAGCCTCCACTTACTTTGAACTAAACTATACAAAAAAAA
ACAACTTTATATTAAACTTTGAGGCTTAAAGAAGGTCCTAACGCTTTCAA
AAGTTTTAATTCTTTCTTAGTCTTGGTTAAACGTAAGCATCATGTTCTTA
AAGAAATGGTTCGCTAACAATCTACAAAATAGTATTCTCAATTCTTTCCA
GGTTGAGCTCTCAAGTTTTCACCGTCGGATCAAATGGAGGTTGCAATAAC
ATAGCTGGTTTAGTGAAAGAACAAAAATCACTATGTCGAAAATATCCAAA
AATGATGGAGGTTGTTGGACAAGGAGCTAAGCTAGGTTTGCAAGAATGTC
AGCACCAGTTTGCAACTTCAAAATGGAACTGTTCACATTTGGATCAACGA
AAGAAAGGATTACTTGGCCTGCTCACCAGTAAAGGTACAACACATTCAGT
TGTCTAGTTCGTAAACCTATGCTTCCTATAAGAACAGAACAAGTGTACAG
CTACTAACAGCTACAAGTATATACTGTTAGCGGATAATGAAAAAATATTT
CTTGTATTTTTTGAAAAAATATTCGTTCATTCAAAAGTTTTGAAATGATT
TTGAGCCCAGCTGGCATTAGAATCTCACCTCGTCCCTGTGTATCCCAGGC
TTTATTTACGTTACTGGTAGACGCCAGAGGCGTTATTAGTAACCATCAAA
AAAAACTATAATACAGAGGGAACGAAGTTGTCAGAATCTTCGATTTTTAA
CCTCTTTCTAAAATCTACTTTTCCAGGTAACCGTGAAGCAGCATTCTTTC
AAGCGATAACGTCAGCCGGTGTAGTCTACAAAGTGACTCGAGCGTGCAAC
AATAATAAATATTCTGCCATATGCACTTGTGAGAAAAGACATGGACCCAT
ACCCCTACAGAACAATCAGCCACTCAAAAAAGGTGAAAAGAGACCATCTT
TCAAATGGTTCTATTGCAATGATAATATCAATTTTGGAATGAAGTTTGCG
GAGAACTTTTTGGACGCGCGGGAAGTTGGGAATGATGCGCGTGTCCTGAT
GAATAAGCAGAACAACTTAGCTGGTAGAGCGGTAAGTAAAACTTTATCAG
GATTTATTCATGATATTCATGAAATAATATTTTCAATGGAAACACCCCAG
TTTTCACCAGTAGTGGAAATTTAAGCTGTAGTAAAATTGTTCAAAGTTTT
TCGCCACTGATGGCAAAAACCGGGGTGTTTTCCGAAGAAAACATTCGTAA
TAAATATCATGAGTTGAGCAACTCTCTTTCGCAGTCTCGAAAACTTAAAA
ACTTTCTTTATTTTTCACGTTCAAATAACGTATAACTTGTAACAATAAGA
AAATAATCTTGATGACCGCTAACTGTTAAAGTTTGGTACCGCTAGAAAGA
TCTATTCTTTTATCATACCAACTTTTGAATCAGGGCACAAAGACTTAGAC
TTAAGACTGAGTAACTATATTAAAATGTGCACAGCAACAAAAAAAGTCGT
CATAATTTTGAAGTAGCGAAGAGAGAAAAACTCTTAATTCAATCAAGAAC
ATTTTCTTCAGGGTAATCATGCCAAACCAAAACTTAATCAAACTTATGAA
ACAGTTTTTTTTACAAATTCAATGTAGTTGCCAATATGTAATAGCCTGAA
TACGCATGGCATAATTTTGCCGTAGTAATCGAAAGTCTCCTGACTATAAA
GAAAAGAAACAAAGTCAAAAAAAAAATTGCTAGAATTCCAATGCAAAATA
GTTTGTTTGATTATAATGAGTCATGGGTAGTTTGAGGATGACCAAAAAGG
CTGGACTTCCAATCACTAGCACTTCATCATATTTAGAAAGTTTGTCCGGA
GAAAAACACAGGCTGAATTATTTTACTCATCAGTTCATCATCAAATGTAA
ATAGATATTTTTCTTTATAAAAAGGTCAGTGCAACAGGGAAAATAAGGCA
AATCTGGAATCGCCAGGTCAATCACTAAACAGTGGGTTCGTTTGTCCCAA
AAGTGAACCTGAACACAAACTTTGAAATCTACCAAGTACCCTAATTTGAG
CAAACGCGACTAGTAAATGACGTCAAAACAATATCCATCTCAAGCCCATA
ACGACCATAAGACGTCAGATAGACGTCAAATTAACTCTTTTTGACCGCCT
AGGTACAATAGTAAAAAAAAAGGTACTGGCAAAGAAATAATACTTCAAAT
AAGAGCGGCGGTACTAAGTTTTCTTTCATAATAAACATATCGGAAATAAA
TTATCAGGAAAATTTGGGGTGACAACCAGCTGGCGTTAGATCGAAGCAGG
AAACCCTCCCAGAAATTAAAAACAGATATAAAAAAAACAGCCAAATTGGA
AGTGTATTATTTATTCCTCTGTCAGCGGAAACAGTGTAGGGTTTGTATAT
TTCCCGCCATCACTCATGCAAAGGTAACGTTTGCAAAGGAAAACATTAAT
ATGATAGACGACCACCTAATGACATCCTCTATCCGAATCTAATTTCCATA
AATGGAAAGATAGAGAGAGGTTACTTTTATGAATACATGACTAATTAATT
TTGGTTGCAACGCAAGTTTCCATAATCGAACAGGACAAGAAAACGCCCTT
TTCTTATAAGCTATAGTAGAGCCTCTTTATCTCAGAGCTCTATAACTCGA
CTCGAACAAGCTTTTTCGTCCCTTTTGTTAGCAATGCATTATAAACCTTA
CTCCTTATGTCGAAATTTCCTTAACTCGAACAAATTCGTGTTCCCTGTGC
GTGATCGATTATGCAGACTCAGCTGTATCACATATTTTCTATCAAATATT
CCCTTCAGGTTAGCTTAACTTTTCCAAATTGACTATAGAAAGTGATTACA
AACAACTTGAATACAAAACTAGGTGGTGGTGAATAAATTGAACATTTCTG
TGCAGTTTTACTATTTTACCTTTTGCGATAACGTTTAAGCCTAACCGAGC
TCTAAAAACGGATATCTCATAGATTCATTGAATGAGACAAGGAATCTTTC
CCGCATTACCAGTTCAATAGATTTTAATAAAGAGGGCGATTATTACTGAC
TAATCGAAAACCAAGATGCTAAAAATGGTTTAACACATTATTAAGTATCA
CATTATCACATTGCAATAATGATCTTTAATTAACTATTATGCATCTTGAA
TCAAGCACTTAAAATAGAACAAACAGTACCCAGTACCGTGCTGAGTCAAT
CCCATATTCAAAATTCAAATTCAAACGAACCAATACCGTGCTGAGTCAAT
CCCATATTCAAAATTCAAATTCAAACGAACCAATTCCGAACCAATTCCGT
TATAAAAAAAAGTAATTTTCATCAATTAATTTTGTTTTCAGGTTGTTAAA
TCCTTAATGACGTTTGAATGTACGTGCCACGGTGTATCTGGAGCGTGCAA
CGTCAAGACATGCCGGAACTCGTTACCAAATTTTTACCGAGTTGGGGATT
ACCTTCAACAACAGTATCACGGTGCGATATTCGTGACGTTGGATCAAGTC
CGGAACATAATTACACCACGGAATCCGGGCGTCAAAGAACACAGTCCTAA
GGATTTAGTTTATTTAGAAGAATCGCCAGACTATTGTGAGGTCAATATCA
AGGAAGGTACTTTAGGCGTGGCAGGTCGCAGGTGTAACAAGACATCACCG
GGTCCTGATGGTTGTTCTGTGATGTGTTGTGGTATGGGACATCATACCAA
AAAGGTAATAGTTTGAATTCTTCCAGTTAAACGATATTAAACCGATTTCT
TTCAGTGTAATGATAAAAAGCTAAAATTCAATTCGTGTCCATAAATTGTT
TTTAAAGGTGTTTTTCTTGGTCTATGGTGTGATCCAGAGTCGACTCTCGC
TCATTTAAACTTTTTACTTTTTAAATGTTTCTTTAATTCGACCTAGCGCT
CAGTCACTGTCAACCAGAAATCCTCAGGAAATCTTTTTTAGATTTCAAGT
CGGGTTTCAAACTAGGGAGAGTTACTGTATGTTACGAAATTACAATGTTA
TCAGAGGGTAGATGAAAAAGTTTTGTAATGTAAATATATTATACTTTTTC
AATTTATCAGGTTTGGGTGGAATCGAATTGCGACTGTACGTTTATCTGGT
GTTGCAAAGTTCAATGTCAAAAATGTCGGTCTCTTCAACAACAACATTTC
TGCCGTGCTAAGAAGAAGAGAAGAAAAAACAAAAACAAAAGACGCCGGAA
GAACCGTAACGGAAACCACCAAATACAACGGGACGAACCGTCAAACCATA
TCATGGATAGGAAAAAACGATCAGTAATGTTACGCGAATACCTAACCTAA
AGAGGTGGCTACAAGTAGAGAAATAAGGAGACGAAAAGGAAAAAGTGGGT
GTGCTCAGAGCCTTAGTGTTGGCCGGCAACGTGTAAACAATGACTTTCAT
TCTTTCCGGGAATTTGGCCCCCTGATGAATTTCCCACGTAGAAAGCGGTT
ACACAAAACATCCGATTGAATAAACGAGACTAAGAGAAGGAAATTTGTGG
TTAACAAAGACAAAGATAATGACTTAACCAAAAAGGCATAAAAATGACAT
TATAATAATGACAAAATAATCTTAAAATATTCGATGTTAATAGTTTTGAT
TTGAATATTCGATGGAGACGTGAACAAATTGTAAATAATATATAGTTGTT
CTGGATGATGAACTTTAGATTTACTAGATACTTGGTGAATAAAAAAACGT
AAAAGATTTTAACCCTGATATTTTGTAAATAATCTAAGATGACTCATGAT
AAATATTTGTTGGTATAAAATACACAAATAACCACAAGAAAATATCTTTG
TTATCAGATATCTTTGTTTCATGACCCCTTCCAAATAACAGTTTAACAGG
AAAAACTGGTAATATTCTCTTGAGAGACATCACTCCGAGAAAG

Coding sequence (CDS) from alignment at scaffold_167:174503..183445-

>TCONS_00050019 ID=TCONS_00050019|Name=TCONS_00050019|organism=Clytia hemisphaerica|type=CDS|length=6015bp|location=Sequence derived from alignment at scaffold_167:174503..183445- (Clytia hemisphaerica)
GTTTGGGTGGAATCGAATTGCGACTGTACGTTTATCTGGTGTTGCAAAGT
TCAATGTCAAAAATGTCGGTCTCTTCAACAACAACATTTCTGCCGTGCTA
AGAAGAAGAGAAGAAAAAACAAAAACAAAAGACGCCGGAAGAACCGTAAC
GGAAACCACCAAATACAACGGGACGAACCGTCAAACCATATCATGGATAG
GAAAAAACGATCAGTAATGTTACGCGAATACCTAACCTAAGTTGTTAAAT
CCTTAATGACGTTTGAATGTACGTGCCACGGTGTATCTGGAGCGTGCAAC
GTCAAGACATGCCGGAACTCGTTACCAAATTTTTACCGAGTTGGGGATTA
CCTTCAACAACAGTATCACGGTGCGATATTCGTGACGTTGGATCAAGTCC
GGAACATAATTACACCACGGAATCCGGGCGTCAAAGAACACAGTCCTAAG
GATTTAGTTTATTTAGAAGAATCGCCAGACTATTGTGAGGTCAATATCAA
GGAAGGTACTTTAGGCGTGGCAGGTCGCAGGTGTAACAAGACATCACCGG
GTCCTGATGGTTGTTCTGTGATGTGTTGTGGTATGGGACATCATACCAAA
AAGGTAACCGTGAAGCAGCATTCTTTCAAGCGATAACGTCAGCCGGTGTA
GTCTACAAAGTGACTCGAGCGTGCAACAATAATAAATATTCTGCCATATG
CACTTGTGAGAAAAGACATGGACCCATACCCCTACAGAACAATCAGCCAC
TCAAAAAAGGTGAAAAGAGACCATCTTTCAAATGGTTCTATTGCAATGAT
AATATCAATTTTGGAATGAAGTTTGCGGAGAACTTTTTGGACGCGCGGGA
AGTTGGGAATGATGCGCGTGTCCTGATGAATAAGCAGAACAACTTAGCTG
GTAGAGCGGTTGAGCTCTCAAGTTTTCACCGTCGGATCAAATGGAGGTTG
CAATAACATAGCTGGTTTAGTGAAAGAACAAAAATCACTATGTCGAAAAT
ATCCAAAAATGATGGAGGTTGTTGGACAAGGAGCTAAGCTAGGTTTGCAA
GAATGTCAGCACCAGTTTGCAACTTCAAAATGGAACTGTTCACATTTGGA
TCAACGAAAGAAAGGATTACTTGGCCTGCTCACCAGTAAAGATGGTTTGG
TTGAAGATTGTGTTGTTCTTGATTCTCGTTCAAACTGTTAGTAGTCATTG
GTGGTTTGGGTGGAATCGAATTGCGACTGTACGTTTATCTGGTGTTGCAA
AGTTCAATGTCAAAAATGTCGGTCTCTTCAACAACAACATTTCTGCCGTG
CTAAGAAGAAGAGAAGAAAAAACAAAAACAAAAGACGCCGGAAGAACCGT
AACGGAAACCACCAAATACAACGGGACGAACCGTCAAACCATATCATGGA
TAGGAAAAAACGATCAGTAATGTTACGCGAATACCTAACCTAAGTTGTTA
AATCCTTAATGACGTTTGAATGTACGTGCCACGGTGTATCTGGAGCGTGC
AACGTCAAGACATGCCGGAACTCGTTACCAAATTTTTACCGAGTTGGGGA
TTACCTTCAACAACAGTATCACGGTGCGATATTCGTGACGTTGGATCAAG
TCCGGAACATAATTACACCACGGAATCCGGGCGTCAAAGAACACAGTCCT
AAGGATTTAGTTTATTTAGAAGAATCGCCAGACTATTGTGAGGTCAATAT
CAAGGAAGGTACTTTAGGCGTGGCAGGTCGCAGGTGTAACAAGACATCAC
CGGGTCCTGATGGTTGTTCTGTGATGTGTTGTGGTATGGGACATCATACC
AAAAAGGTAACCGTGAAGCAGCATTCTTTCAAGCGATAACGTCAGCCGGT
GTAGTCTACAAAGTGACTCGAGCGTGCAACAATAATAAATATTCTGCCAT
ATGCACTTGTGAGAAAAGACATGGACCCATACCCCTACAGAACAATCAGC
CACTCAAAAAAGGTGAAAAGAGACCATCTTTCAAATGGTTCTATTGCAAT
GATAATATCAATTTTGGAATGAAGTTTGCGGAGAACTTTTTGGACGCGCG
GGAAGTTGGGAATGATGCGCGTGTCCTGATGAATAAGCAGAACAACTTAG
CTGGTAGAGCGGTTGAGCTCTCAAGTTTTCACCGTCGGATCAAATGGAGG
TTGCAATAACATAGCTGGTTTAGTGAAAGAACAAAAATCACTATGTCGAA
AATATCCAAAAATGATGGAGGTTGTTGGACAAGGAGCTAAGCTAGGTTTG
CAAGAATGTCAGCACCAGTTTGCAACTTCAAAATGGAACTGTTCACATTT
GGATCAACGAAAGAAAGGATTACTTGGCCTGCTCACCAGTAAAGATGGTT
TGGTTGAAGATTGTGTTGTTCTTGATTCTCGTTCAAACTGTTAGTAGTCA
TTGGTGGTTTGGGTGGAATCGAATTGCGACTGTACGTTTATCTGGTGTTG
CAAAGTTCAATGTCAAAAATGTCGGTCTCTTCAACAACAACATTTCTGCC
GTGCTAAGAAGAAGAGAAGAAAAAACAAAAACAAAAGACGCCGGAAGAAC
CGTAACGGAAACCACCAAATACAACGGGACGAACCGTCAAACCATATCAT
GGATAGGAAAAAACGATCAGTAATGTTACGCGAATACCTAACCTAAGTTG
TTAAATCCTTAATGACGTTTGAATGTACGTGCCACGGTGTATCTGGAGCG
TGCAACGTCAAGACATGCCGGAACTCGTTACCAAATTTTTACCGAGTTGG
GGATTACCTTCAACAACAGTATCACGGTGCGATATTCGTGACGTTGGATC
AAGTCCGGAACATAATTACACCACGGAATCCGGGCGTCAAAGAACACAGT
CCTAAGGATTTAGTTTATTTAGAAGAATCGCCAGACTATTGTGAGGTCAA
TATCAAGGAAGGTACTTTAGGCGTGGCAGGTCGCAGGTGTAACAAGACAT
CACCGGGTCCTGATGGTTGTTCTGTGATGTGTTGTGGTATGGGACATCAT
ACCAAAAAGGTAACCGTGAAGCAGCATTCTTTCAAGCGATAACGTCAGCC
GGTGTAGTCTACAAAGTGACTCGAGCGTGCAACAATAATAAATATTCTGC
CATATGCACTTGTGAGAAAAGACATGGACCCATACCCCTACAGAACAATC
AGCCACTCAAAAAAGGTGAAAAGAGACCATCTTTCAAATGGTTCTATTGC
AATGATAATATCAATTTTGGAATGAAGTTTGCGGAGAACTTTTTGGACGC
GCGGGAAGTTGGGAATGATGCGCGTGTCCTGATGAATAAGCAGAACAACT
TAGCTGGTAGAGCGGTTGAGCTCTCAAGTTTTCACCGTCGGATCAAATGG
AGGTTGCAATAACATAGCTGGTTTAGTGAAAGAACAAAAATCACTATGTC
GAAAATATCCAAAAATGATGGAGGTTGTTGGACAAGGAGCTAAGCTAGGT
TTGCAAGAATGTCAGCACCAGTTTGCAACTTCAAAATGGAACTGTTCACA
TTTGGATCAACGAAAGAAAGGATTACTTGGCCTGCTCACCAGTAAAGATG
GTTTGGTTGAAGATTGTGTTGTTCTTGATTCTCGTTCAAACTGTTAGTAG
TCATTGGTGGTTTGGGTGGAATCGAATTGCGACTGTACGTTTATCTGGTG
TTGCAAAGTTCAATGTCAAAAATGTCGGTCTCTTCAACAACAACATTTCT
GCCGTGCTAAGAAGAAGAGAAGAAAAAACAAAAACAAAAGACGCCGGAAG
AACCGTAACGGAAACCACCAAATACAACGGGACGAACCGTCAAACCATAT
CATGGATAGGAAAAAACGATCAGTAATGTTACGCGAATACCTAACCTAAG
TTGTTAAATCCTTAATGACGTTTGAATGTACGTGCCACGGTGTATCTGGA
GCGTGCAACGTCAAGACATGCCGGAACTCGTTACCAAATTTTTACCGAGT
TGGGGATTACCTTCAACAACAGTATCACGGTGCGATATTCGTGACGTTGG
ATCAAGTCCGGAACATAATTACACCACGGAATCCGGGCGTCAAAGAACAC
AGTCCTAAGGATTTAGTTTATTTAGAAGAATCGCCAGACTATTGTGAGGT
CAATATCAAGGAAGGTACTTTAGGCGTGGCAGGTCGCAGGTGTAACAAGA
CATCACCGGGTCCTGATGGTTGTTCTGTGATGTGTTGTGGTATGGGACAT
CATACCAAAAAGGTAACCGTGAAGCAGCATTCTTTCAAGCGATAACGTCA
GCCGGTGTAGTCTACAAAGTGACTCGAGCGTGCAACAATAATAAATATTC
TGCCATATGCACTTGTGAGAAAAGACATGGACCCATACCCCTACAGAACA
ATCAGCCACTCAAAAAAGGTGAAAAGAGACCATCTTTCAAATGGTTCTAT
TGCAATGATAATATCAATTTTGGAATGAAGTTTGCGGAGAACTTTTTGGA
CGCGCGGGAAGTTGGGAATGATGCGCGTGTCCTGATGAATAAGCAGAACA
ACTTAGCTGGTAGAGCGGTTGAGCTCTCAAGTTTTCACCGTCGGATCAAA
TGGAGGTTGCAATAACATAGCTGGTTTAGTGAAAGAACAAAAATCACTAT
GTCGAAAATATCCAAAAATGATGGAGGTTGTTGGACAAGGAGCTAAGCTA
GGTTTGCAAGAATGTCAGCACCAGTTTGCAACTTCAAAATGGAACTGTTC
ACATTTGGATCAACGAAAGAAAGGATTACTTGGCCTGCTCACCAGTAAAG
ATGGTTTGGTTGAAGATTGTGTTGTTCTTGATTCTCGTTCAAACTGTTAG
TAGTCATTGGTGGTTTGGGTGGAATCGAATTGCGACTGTACGTTTATCTG
GTGTTGCAAAGTTCAATGTCAAAAATGTCGGTCTCTTCAACAACAACATT
TCTGCCGTGCTAAGAAGAAGAGAAGAAAAAACAAAAACAAAAGACGCCGG
AAGAACCGTAACGGAAACCACCAAATACAACGGGACGAACCGTCAAACCA
TATCATGGATAGGAAAAAACGATCAGTAATGTTACGCGAATACCTAACCT
AAGTTGTTAAATCCTTAATGACGTTTGAATGTACGTGCCACGGTGTATCT
GGAGCGTGCAACGTCAAGACATGCCGGAACTCGTTACCAAATTTTTACCG
AGTTGGGGATTACCTTCAACAACAGTATCACGGTGCGATATTCGTGACGT
TGGATCAAGTCCGGAACATAATTACACCACGGAATCCGGGCGTCAAAGAA
CACAGTCCTAAGGATTTAGTTTATTTAGAAGAATCGCCAGACTATTGTGA
GGTCAATATCAAGGAAGGTACTTTAGGCGTGGCAGGTCGCAGGTGTAACA
AGACATCACCGGGTCCTGATGGTTGTTCTGTGATGTGTTGTGGTATGGGA
CATCATACCAAAAAGGTAACCGTGAAGCAGCATTCTTTCAAGCGATAACG
TCAGCCGGTGTAGTCTACAAAGTGACTCGAGCGTGCAACAATAATAAATA
TTCTGCCATATGCACTTGTGAGAAAAGACATGGACCCATACCCCTACAGA
ACAATCAGCCACTCAAAAAAGGTGAAAAGAGACCATCTTTCAAATGGTTC
TATTGCAATGATAATATCAATTTTGGAATGAAGTTTGCGGAGAACTTTTT
GGACGCGCGGGAAGTTGGGAATGATGCGCGTGTCCTGATGAATAAGCAGA
ACAACTTAGCTGGTAGAGCGGTTGAGCTCTCAAGTTTTCACCGTCGGATC
AAATGGAGGTTGCAATAACATAGCTGGTTTAGTGAAAGAACAAAAATCAC
TATGTCGAAAATATCCAAAAATGATGGAGGTTGTTGGACAAGGAGCTAAG
CTAGGTTTGCAAGAATGTCAGCACCAGTTTGCAACTTCAAAATGGAACTG
TTCACATTTGGATCAACGAAAGAAAGGATTACTTGGCCTGCTCACCAGTA
AAGATGGTTTGGTTGAAGATTGTGTTGTTCTTGATTCTCGTTCAAACTGT
TAGTAGTCATTGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031686XLOC_031686Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050019-exon-scaffold_167-1575043694:183107..183445TCONS_00050019-exon-scaffold_167-1575043694:183107..183445Clytia hemisphaericaexon
TCONS_00050019-exon-scaffold_167-1575043694:178962..179194TCONS_00050019-exon-scaffold_167-1575043694:178962..179194Clytia hemisphaericaexon
TCONS_00050019-exon-scaffold_167-1575043694:178315..178619TCONS_00050019-exon-scaffold_167-1575043694:178315..178619Clytia hemisphaericaexon
TCONS_00050019-exon-scaffold_167-1575043694:175692..176054TCONS_00050019-exon-scaffold_167-1575043694:175692..176054Clytia hemisphaericaexon
TCONS_00050019-exon-scaffold_167-1575043694:174503..175335TCONS_00050019-exon-scaffold_167-1575043694:174503..175335Clytia hemisphaericaexon
TCONS_00050019-exon-scaffold_167-1510915933:183107..183445TCONS_00050019-exon-scaffold_167-1510915933:183107..183445Clytia hemisphaericaexon
TCONS_00050019-exon-scaffold_167-1510915933:178962..179194TCONS_00050019-exon-scaffold_167-1510915933:178962..179194Clytia hemisphaericaexon
TCONS_00050019-exon-scaffold_167-1510915933:178315..178619TCONS_00050019-exon-scaffold_167-1510915933:178315..178619Clytia hemisphaericaexon
TCONS_00050019-exon-scaffold_167-1510915933:175692..176054TCONS_00050019-exon-scaffold_167-1510915933:175692..176054Clytia hemisphaericaexon
TCONS_00050019-exon-scaffold_167-1510915933:174503..175335TCONS_00050019-exon-scaffold_167-1510915933:174503..175335Clytia hemisphaericaexon
TCONS_00050019-exon-scaffold_167-1491911889:183107..183445TCONS_00050019-exon-scaffold_167-1491911889:183107..183445Clytia hemisphaericaexon
TCONS_00050019-exon-scaffold_167-1491911889:178962..179194TCONS_00050019-exon-scaffold_167-1491911889:178962..179194Clytia hemisphaericaexon
TCONS_00050019-exon-scaffold_167-1491911889:178315..178619TCONS_00050019-exon-scaffold_167-1491911889:178315..178619Clytia hemisphaericaexon
TCONS_00050019-exon-scaffold_167-1491911889:175692..176054TCONS_00050019-exon-scaffold_167-1491911889:175692..176054Clytia hemisphaericaexon
TCONS_00050019-exon-scaffold_167-1491911889:174503..175335TCONS_00050019-exon-scaffold_167-1491911889:174503..175335Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
unclassified Wnt ligand X1ATCONS_00050019-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:174503..183445 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.152265	0.111362	0.107751	0.0843343	22.5615	18.518	64.3808	72.2079	36.4403	39.7533	17.5476	20.2308	22.8483	20.5206	23.4093	24.7971	7.85845	6.9563	24.4208	20.5368	11.483	11.7675	2.37871	5.21799	4.76136	8.07933	1.67028	0.30638	0.126752	0.279803
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005817Wnt
Vocabulary: Molecular Function
TermDefinition
GO:0005102receptor binding
Vocabulary: Biological Process
TermDefinition
GO:0007275multicellular organism development
GO:0016055Wnt signaling pathway
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007275 multicellular organism development
biological_process GO:0016055 Wnt signaling pathway
cellular_component GO:0005576 extracellular region
molecular_function GO:0005102 receptor binding
Blast
[Close]
BLAST of TCONS_00050019 vs. Swiss-Prot (Human)
Match: WNT2B (Protein Wnt-2b OS=Homo sapiens GN=WNT2B PE=1 SV=2)

HSP 1 Score: 293.123 bits (749), Expect = 2.284e-91
Identity = 147/343 (42.86%), Postives = 213/343 (62.10%), Query Frame = 2 
Query:  323 VSSHWWLSSQVFTVGSNGGCNNIAGLVKEQKSLCRKYPKMMEVVGQGAKLGLQECQHQFATSKWNCSHLDQRXXXXXXXXTSKGNREAAFFQAITSAGVVYKVTRACNNNKYSAICTCEKRHGPIPLQNNQPLKKG---EKRPSFKWFYCNDNINFGMKFAENFLDAREVG-NDARVLMNKQNNLAGRAVVKSLMTFECTCHGVSGACNVKTCRNSLPNFYRVGDYLQQQYHGAIFVTLDQVRNIITPRNPGVKEHSPKDLVYLEESPDYCEVNIKEGTLGVAGRRCNKTSPGPDGCSVMCCGMGHHTKKVWVESNCDCTFIWCCKVQCQKCRSLQQQHFCRA 1339
            V + WW    +  +G+   C+NI GLV  Q+ LC++YP +M  VG+GA+  ++ECQHQF   +WNC+ LD R   + G +  + +REAAF  AI+SAGVV+ +TRAC+  + S +C+C+            P  +G   ++R  F W  C+DNI++G++FA+ F+DA+E    DAR LMN  NN  GR  V+  +  EC CHGVSG+C ++TC  +L +F R GDYL+++Y GA+ V   Q     T    G +  +  DLVY + SPDYC ++   G+LG AGR C+KTS G DGC +MCCG G+ T +V   + C+C F WCC V+C++CR+    H C+A
Sbjct:   56 VDTSWWY---IGALGARVICDNIPGLVSRQRQLCQRYPDIMRSVGEGAREWIRECQHQFRHHRWNCTTLD-RDHTVFGRVMLRSSREAAFVYAISSAGVVHAITRACSQGELS-VCSCD------------PYTRGRHHDQRGDFDWGGCSDNIHYGVRFAKAFVDAKEKRLKDARALMNLHNNRCGRTAVRRFLKLECKCHGVSGSCTLRTCWRALSDFRRTGDYLRRRYDGAVQVMATQDGANFTAARQGYRRATRTDLVYFDNSPDYCVLDKAAGSLGTAGRVCSKTSKGTDGCEIMCCGRGYDTTRVTRVTQCECKFHWCCAVRCKECRNTVDVHTCKA 381
The following BLAST results are available for this feature:
BLAST of TCONS_00050019 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WNT2B2.284e-9142.86Protein Wnt-2b OS=Homo sapiens GN=WNT2B PE=1 SV=2[more]
back to top