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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050008 ID=TCONS_00050008|Name=TCONS_00050008|organism=Clytia hemisphaerica|type=transcript|length=1043bp
TTGTGTCAAATacggaccggtctgtaaaatatcaacctcagGTGAGTTTC
CTGGTCATCATTTCACTTAATCATGGCTCGTACGAAACAAACACAACAAC
GGCGTCGAAAAGTAGCATCACCAAAATCAACTTCAACACCTGCTGACAGA
GTTTCTTCTCCCCAATCATCACACGCATCACCCTCAAGTATCGATTCTAA
CTCGGCCACACAAACACTGAATATGGGATCATCTATGGAAGGTACTAATG
GTACGGAGCAAGACAACACATCCTTGATTGAAGAAATTCTTGGAAATAAT
TCTGTGCAGAATGACACTGAGGAAGCATCAGAGAATTCGAATGTAAATGA
AGGAAACTCAAGCATTGCTGTTAAACTATTCGAAGAAAACCATAGTGACT
CTGACGTatcaaaaagtcagaaaattccgGTAGAAGCTCCgaagaaaaat
gaaagAAAATTATCACAAAggtcaaaaattctgaaagagaTACGTTTCTT
CCGACGTACAAACCACAAATTGGTTCCTAAGTTGGCGTTCTGTCGGCTGG
TCAAAGAAATCGTGTCCAGAATTCCAGGGATTGATGAGACCCTTCGTATA
CAAACATTGGCTTTGGAAGCACTCCATGAAGCAGCGGAGAGCTTTTTGGT
TCGATTTTTTGAGGAATCTAATTTATGTGCTTTTCATAGCCGACGAGTTA
CTGTTATGCGGAAAGATATGAAGTTTTTGAAAGTACTCAAATATAGGACT
GGTTATCCTAAGCTTATTTGAGGGATTGTGTCGGttgttttctttgtctt
ttgatAAAGTTGTTGGAAATATATTTGTAAGTGGATTTGTCGTGTTTTTA
TCTTTGCTTAGTTTTTTCCGTGGTTTGTTGAAAGAATTCGATATTTGGGA
ATCAATTAATTTCAAACCTTCTTTAAGGTCAAATTTATTTTGTACTTTTC
GTTTTTGTATTAAACTTTTACAAAATAGTTTTATATATTtcgcatttttt
tcaaaataatattaTCACGATTAAAAACGAAAATTGATCTTCG Run BLAST on NCBI transcript from alignment at scaffold_167:1849826..1853731+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050008 ID=TCONS_00050008|Name=TCONS_00050008|organism=Clytia hemisphaerica|type=transcript|length=3906bp|location=Sequence derived from alignment at scaffold_167:1849826..1853731+ (Clytia hemisphaerica)
TTGTGTCAAATacggaccggtctgtaaaatatcaacctcaggtgaatttg
aaaaattggcgGGAGAagtaatctcataacagatcatctcCATTCTGCGC
ACACCATACACACTTTGCTCTGCTCTAAAGTGATACGGCGAATGTGacga
tctgacctggttgttcagccaaaacaatcacaagcgcttttgtttgaaaa
cgaaagtgaaagcgaTTGGGTTCTTGGCTTGTTTTCgtgcgattgttttg
ctttagtcaATCACcgcgctcaaaagctcatttaatattcaccCTAAATC
TGGCCAACCTGAGCAGATTTTCTTACGGAGCCAtggcctttagagtgaat
acgtgcTAGCGCGGAGTAAACATAATTTGCTGCGGAAGAAGTAGTTTCAG
TGAATTGAATTCTGTTTATTCGAATAACACACCCCATTGAAACTTTGAAT
AACTTTGAAAATGCTTTACTTTACTTGTTACTTTTCAAGGTGAGTTTCCT
GGTCATCATTTCACTTAATCATGGCTCGTACGAAACAAACACAACAACGG
CGTCGAAAAGTAGCATCACCAAAATCAACTTCAACACCTGCTGACAGAGT
TTCTTCTCCCCAATCATCACACGCATCACCCTCAAGTATCGATTCTAACT
CGGCCACACAAACACTGAATATGGGATCATCTATGGAAGGTACTAATGGT
ACGGAGCAAGACAACACATCCTTGATTGAAGAAATTCTTGGAAATAATTC
TGTGCAGAATGACACTGAGGAAGGTTAATAATAAAGCTTATTTTGACCTG
TTTTGACACCTCGGTTTCTGTGACCCGGTGAgaattagtctgaatcgcag
acctctacaaaacctcaGGTAGTATAGGGAGAATAAATCCGTTAGTGGAT
NtgaatcgcagacctctacaaaacctcaGGTAGTATAGGGAGAATaaatc
cgttagtggatacTAGCAGGATATTTCAGCCGATAGACATTGTcgatagt
cagaaaattgattttagtccTGTTTTAGAAATAGGAATATCAAAACGTAG
GCAAAACTAATTATACCATCTCAANGCTAGCAGGATATTTCAGCCAATAG
ACATTGTcgatagtcagaaaattgattttagtccTGTTTTAGAAATAGGA
ATATCAAAACGTAGGCAAAACTAATTATACCATCTCAAACAGTCAATTTA
GATAAAATTTTAAAGCAGTTTTTTATTTATACTTATAGCATCAGAGAATT
CGAATGTAAATGAAGGAAACTCAAGCATTGCTGTTAAACTATTCGAAGAA
AACCATAGTGACTCTGACGTatcaaaaagtcagaaaattccgGTAGAAGC
TCCgaagaaaaatgaaaggtaatccaatgtcttattttttttcggTTTAT
CTGGCCATGGACAGGGTCAAGGCTATAATACCTTGGTAGCGACTGGTGGA
TTTAAGACAGTAGAGCAactacgtcggaaacatgcgaaggagtgcaacgc
tcgtcaaaagaaaatgaaattacatttacaaatctcttcctctgataagt
gcgacatggtctaaaaccgcctatgccTTGTAGGGGGAATATTGTATAAA
TATTTCAGGCTTGCCTACGTTCTTATTTTNggggggggggggtcggtagt
aaaatctcagacatatatgagtagtaaaaggatttttacgaatttttaca
taccacaaCCCAGattcttggaagaggtattttacttccctggtagtaaa
agcttttgggacaatttgtcatggagaccacctattttttggttgctttt
ctgactgattttgcaaaaaaagctaaaaaatgatgatttctgTGACACAG
TTTTcacgtagtgcaaaaattaatgtttttcccttagaattaaagtcttt
tatattgacaaaaaatttcgagaattttttgtttgcagcaaacaactttc
caacagaaaattttttcaaattataaaaattttcagattttttcagaaNN
NNNNNNNNNNNNNNtttgcagcaaacaactttccaacagaaaattttttc
aaattataaaaattttcagattttttcagaaaagtcatccagaaaattaa
aagaattacaaaaaatacctaaaatttgctaattttaccagttttaacta
cccgggtagtaaatttttttcaacactttaacacatagataccacccatt
ttagtatttaactaccctgggtagtaaattttttttttcgatttttcgtc
acaccaccaccgtagtaaacgtcattatgtctgagattttactaccgacc
ccccccccccttttttNGCTTATTTTGACCTGTTTTGACACCTCGGTTTC
TGTGACCCGGTGAgaattagtctgaatcgcagacctctacaaaacctcaG
GTAGTATAGGGAGAATaaatccgttagtggatacTAGCAGGATATTTCAG
CCAATAGACATTGTcgatagtcagaaaattgattttagtccTGTTTTAGA
AATAGGAATATCAAAACGTAGGCAAAACTAATTATACCATCTCAAACAGT
CAATTTAGATAAAATTTTAAAGCAGTTTTTTATTTATACTTATAGCATCA
GAGAATTCGAATGTAAATGAAGGAAACTCAAGCATTGCTGTTAAACTATT
CGAAGAAAACCATAGTGACTCTGACGTatcaaaaagtcagaaaattccgG
TAGAAGCTCCgaagaaaaatgaaaggtaatccaatgtcttattttttttc
ggTTTATCTGGCCATGGACAGGGTCAAGGCTATAATACCTTGGTAGCGAC
TGGTGGATTTAAGACAGTAGAGCAactacgtcggaaacatgcgaaggagt
gcaacgctcgtcaaaagaaaatgaaattacatttacaaatctcttCCTCT
GATAAGTgcgacatggtctaaaaccgcctatgccTTGTAGGGGGAATATT
GTATAAATATTTCAGGCTTGCCTACGTTCTTATTTTAGTTTGGCATGTTG
AGGGTTAAATTATTATAATCTAGTTATTCTTTCAAGGATAAAGAAGTATT
GAAGAGGACCTTGAAAAACTTTGTACCGTTTATTAAGCCTTTCCAAGCTC
AACATTGTTCtagaatgttttttattttctggcatTTCTGAATCtgagcc
tcaatgttcttataaaattgttattataaaaaaaacgatTGTGTGAAGAA
ATTACTTAACCGAGACCAGTAGTTTCATCTCTGATTTCTGGCAgctaatt
ttaaatttgatgccGACTGGCTACTCGTTCGAACTATTTTCTACCGCTCG
TATGTCCTCGTGTTTCAGAAAATTATCACAAAggtcaaaaattctgaaag
agaTACGTTTCTTCCGACGTACAAACCACAAATTGGTTCCTAAGTTGGCG
TTCTGTCGGCTGGTCAAAGAAATCGTGTCCAGAATTCCAGGGATTGATGA
GACCCTTCGTATACAAACATTGGCTTTGGAAGCACTCCATGAAGCAGCGG
AGAGCTTTTTGGTTCGATTTTTTGAGGAATCTAATTTATGTGCTTTTCAT
AGCCGACGAGTTACTGTTATGCGGAAAGATATGAAGTTTTTGAAAGTACT
CAAATATAGGACTGGTTATCCTAAGCTTATTTGAGGGATTGTGTCGGttg
ttttctttgtcttttgatAAAGTTGTTGGAAATATATTTGTAAGTGGATT
TGTCGTGTTTTTATCTTTGCTTAGTTTTTTCCGTGGTTTGTTGAAAGAAT
TCGATATTTGGGAATCAATTAATTTCAAACCTTCTTTAAGGTCAAATTTA
TTTTGTACTTTTCGTTTTTGTATTAAACTTTTACAAAATAGTTTTATATA
TTtcgcatttttttcaaaataatattaTCACGATTAAAAACGAAAATTGA
TCTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050008-exon-scaffold_167-1491911889:1849826..1849866 | TCONS_00050008-exon-scaffold_167-1491911889:1849826..1849866 | Clytia hemisphaerica | exon |
| TCONS_00050008-exon-scaffold_167-1510915933:1849826..1849866 | TCONS_00050008-exon-scaffold_167-1510915933:1849826..1849866 | Clytia hemisphaerica | exon |
| TCONS_00050008-exon-scaffold_167-1575043694:1849826..1849866 | TCONS_00050008-exon-scaffold_167-1575043694:1849826..1849866 | Clytia hemisphaerica | exon |
| TCONS_00050008-exon-scaffold_167-1491911889:1850315..1850598 | TCONS_00050008-exon-scaffold_167-1491911889:1850315..1850598 | Clytia hemisphaerica | exon |
| TCONS_00050008-exon-scaffold_167-1510915933:1850315..1850598 | TCONS_00050008-exon-scaffold_167-1510915933:1850315..1850598 | Clytia hemisphaerica | exon |
| TCONS_00050008-exon-scaffold_167-1575043694:1850315..1850598 | TCONS_00050008-exon-scaffold_167-1575043694:1850315..1850598 | Clytia hemisphaerica | exon |
| TCONS_00050008-exon-scaffold_167-1491911889:1851064..1851193 | TCONS_00050008-exon-scaffold_167-1491911889:1851064..1851193 | Clytia hemisphaerica | exon |
| TCONS_00050008-exon-scaffold_167-1510915933:1851064..1851193 | TCONS_00050008-exon-scaffold_167-1510915933:1851064..1851193 | Clytia hemisphaerica | exon |
| TCONS_00050008-exon-scaffold_167-1575043694:1851064..1851193 | TCONS_00050008-exon-scaffold_167-1575043694:1851064..1851193 | Clytia hemisphaerica | exon |
| TCONS_00050008-exon-scaffold_167-1491911889:1853144..1853731 | TCONS_00050008-exon-scaffold_167-1491911889:1853144..1853731 | Clytia hemisphaerica | exon |
| TCONS_00050008-exon-scaffold_167-1510915933:1853144..1853731 | TCONS_00050008-exon-scaffold_167-1510915933:1853144..1853731 | Clytia hemisphaerica | exon |
| TCONS_00050008-exon-scaffold_167-1575043694:1853144..1853731 | TCONS_00050008-exon-scaffold_167-1575043694:1853144..1853731 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:1849826..1853731 + |
Blast
The following BLAST results are available for this feature:
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