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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050007 ID=TCONS_00050007|Name=TCONS_00050007|organism=Clytia hemisphaerica|type=transcript|length=1116bp
GGTATTGATAATACATTCTTGCAGTTAGAATTTCAGCAACATCAGACGAG
TGGTTATGCTGAAAATGAGCATTTTGTGTCAAATacggaccggtctgtaa
aatatcaacctcagGTGAGTTTCCTGGTCATCATTTCACTTAATCATGGC
TCGTACGAAACAAACACAACAACGGCGTCGAAAAGTAGCATCACCAAAAT
CAACTTCAACACCTGCTGACAGAGTTTCTTCTCCCCAATCATCACACGCA
TCACCCTCAAGTATCGATTCTAACTCGGCCACACAAACACTGAATATGGG
ATCATCTATGGAAGGTACTAATGGTACGGAGCAAGACAACACATCCTTGA
TTGAAGAAATTCTTGGAAATAATTCTGTGCAGAATGACACTGAGGAAGCA
TCAGAGAATTCGAATGTAAATGAAGGAAACTCAAGCATTGCTGTTAAACT
ATTCGAAGAAAACCATAGTGACTCTGACGTatcaaaaagtcagaaaattc
cgGTAGAAGCTCCgaagaaaaatgaaagAAAATTATCACAAAggtcaaaa
attctgaaagagaTACGTTTCTTCCGACGTACAAACCACAAATTGGTTCC
TAAGTTGGCGTTCTGTCGGCTGGTCAAAGAAATCGTGTCCAGAATTCCAG
GGATTGATGAGACCCTTCGTATACAAACATTGGCTTTGGAAGCACTCCAT
GAAGCAGCGGAGAGCTTTTTGGTTCGATTTTTTGAGGAATCTAATTTATG
TGCTTTTCATAGCCGACGAGTTACTGTTATGCGGAAAGATATGAAGTTTT
TGAAAGTACTCAAATATAGGACTGGTTATCCTAAGCTTATTTGAGGGATT
GTGTCGGttgttttctttgtcttttgatAAAGTTGTTGGAAATATATTTG
TAAGTGGATTTGTCGTGTTTTTATCTTTGCTTAGTTTTTTCCGTGGTTTG
TTGAAAGAATTCGATATTTGGGAATCAATTAATTTCAAACCTTCTTTAAG
GTCAAATTTATTTTGTACTTTTCGTTTTTGTATTAAACTTTTACAAAATA
GTTTTATATATTtcgcatttttttcaaaataatattaTCACGATTAAAAA
CGAAAATTGATCTTCG Run BLAST on NCBI transcript from alignment at scaffold_167:1849753..1853731+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050007 ID=TCONS_00050007|Name=TCONS_00050007|organism=Clytia hemisphaerica|type=transcript|length=3979bp|location=Sequence derived from alignment at scaffold_167:1849753..1853731+ (Clytia hemisphaerica)
GGTATTGATAATACATTCTTGCAGTTAGAATTTCAGCAACATCAGACGAG
TGGTTATGCTGAAAATGAGCATTTTGTGTCAAATacggaccggtctgtaa
aatatcaacctcaggtgaatttgaaaaattggcgGGAGAagtaatctcat
aacagatcatctcCATTCTGCGCACACCATACACACTTTGCTCTGCTCTA
AAGTGATACGGCGAATGTGacgatctgacctggttgttcagccaaaacaa
tcacaagcgcttttgtttgaaaacgaaagtgaaagcgaTTGGGTTCTTGG
CTTGTTTTCgtgcgattgttttgctttagtcaATCACcgcgctcaaaagc
tcatttaatattcaccCTAAATCTGGCCAACCTGAGCAGATTTTCTTACG
GAGCCAtggcctttagagtgaatacgtgcTAGCGCGGAGTAAACATAATT
TGCTGCGGAAGAAGTAGTTTCAGTGAATTGAATTCTGTTTATTCGAATAA
CACACCCCATTGAAACTTTGAATAACTTTGAAAATGCTTTACTTTACTTG
TTACTTTTCAAGGTGAGTTTCCTGGTCATCATTTCACTTAATCATGGCTC
GTACGAAACAAACACAACAACGGCGTCGAAAAGTAGCATCACCAAAATCA
ACTTCAACACCTGCTGACAGAGTTTCTTCTCCCCAATCATCACACGCATC
ACCCTCAAGTATCGATTCTAACTCGGCCACACAAACACTGAATATGGGAT
CATCTATGGAAGGTACTAATGGTACGGAGCAAGACAACACATCCTTGATT
GAAGAAATTCTTGGAAATAATTCTGTGCAGAATGACACTGAGGAAGGTTA
ATAATAAAGCTTATTTTGACCTGTTTTGACACCTCGGTTTCTGTGACCCG
GTGAgaattagtctgaatcgcagacctctacaaaacctcaGGTAGTATAG
GGAGAATAAATCCGTTAGTGGATNtgaatcgcagacctctacaaaacctc
aGGTAGTATAGGGAGAATaaatccgttagtggatacTAGCAGGATATTTC
AGCCGATAGACATTGTcgatagtcagaaaattgattttagtccTGTTTTA
GAAATAGGAATATCAAAACGTAGGCAAAACTAATTATACCATCTCAANGC
TAGCAGGATATTTCAGCCAATAGACATTGTcgatagtcagaaaattgatt
ttagtccTGTTTTAGAAATAGGAATATCAAAACGTAGGCAAAACTAATTA
TACCATCTCAAACAGTCAATTTAGATAAAATTTTAAAGCAGTTTTTTATT
TATACTTATAGCATCAGAGAATTCGAATGTAAATGAAGGAAACTCAAGCA
TTGCTGTTAAACTATTCGAAGAAAACCATAGTGACTCTGACGTatcaaaa
agtcagaaaattccgGTAGAAGCTCCgaagaaaaatgaaaggtaatccaa
tgtcttattttttttcggTTTATCTGGCCATGGACAGGGTCAAGGCTATA
ATACCTTGGTAGCGACTGGTGGATTTAAGACAGTAGAGCAactacgtcgg
aaacatgcgaaggagtgcaacgctcgtcaaaagaaaatgaaattacattt
acaaatctcttcctctgataagtgcgacatggtctaaaaccgcctatgcc
TTGTAGGGGGAATATTGTATAAATATTTCAGGCTTGCCTACGTTCTTATT
TTNggggggggggggtcggtagtaaaatctcagacatatatgagtagtaa
aaggatttttacgaatttttacataccacaaCCCAGattcttggaagagg
tattttacttccctggtagtaaaagcttttgggacaatttgtcatggaga
ccacctattttttggttgcttttctgactgattttgcaaaaaaagctaaa
aaatgatgatttctgTGACACAGTTTTcacgtagtgcaaaaattaatgtt
tttcccttagaattaaagtcttttatattgacaaaaaatttcgagaattt
tttgtttgcagcaaacaactttccaacagaaaattttttcaaattataaa
aattttcagattttttcagaaNNNNNNNNNNNNNNNNtttgcagcaaaca
actttccaacagaaaattttttcaaattataaaaattttcagattttttc
agaaaagtcatccagaaaattaaaagaattacaaaaaatacctaaaattt
gctaattttaccagttttaactacccgggtagtaaatttttttcaacact
ttaacacatagataccacccattttagtatttaactaccctgggtagtaa
attttttttttcgatttttcgtcacaccaccaccgtagtaaacgtcatta
tgtctgagattttactaccgaccccccccccccttttttNGCTTATTTTG
ACCTGTTTTGACACCTCGGTTTCTGTGACCCGGTGAgaattagtctgaat
cgcagacctctacaaaacctcaGGTAGTATAGGGAGAATaaatccgttag
tggatacTAGCAGGATATTTCAGCCAATAGACATTGTcgatagtcagaaa
attgattttagtccTGTTTTAGAAATAGGAATATCAAAACGTAGGCAAAA
CTAATTATACCATCTCAAACAGTCAATTTAGATAAAATTTTAAAGCAGTT
TTTTATTTATACTTATAGCATCAGAGAATTCGAATGTAAATGAAGGAAAC
TCAAGCATTGCTGTTAAACTATTCGAAGAAAACCATAGTGACTCTGACGT
atcaaaaagtcagaaaattccgGTAGAAGCTCCgaagaaaaatgaaaggt
aatccaatgtcttattttttttcggTTTATCTGGCCATGGACAGGGTCAA
GGCTATAATACCTTGGTAGCGACTGGTGGATTTAAGACAGTAGAGCAact
acgtcggaaacatgcgaaggagtgcaacgctcgtcaaaagaaaatgaaat
tacatttacaaatctcttCCTCTGATAAGTgcgacatggtctaaaaccgc
ctatgccTTGTAGGGGGAATATTGTATAAATATTTCAGGCTTGCCTACGT
TCTTATTTTAGTTTGGCATGTTGAGGGTTAAATTATTATAATCTAGTTAT
TCTTTCAAGGATAAAGAAGTATTGAAGAGGACCTTGAAAAACTTTGTACC
GTTTATTAAGCCTTTCCAAGCTCAACATTGTTCtagaatgttttttattt
tctggcatTTCTGAATCtgagcctcaatgttcttataaaattgttattat
aaaaaaaacgatTGTGTGAAGAAATTACTTAACCGAGACCAGTAGTTTCA
TCTCTGATTTCTGGCAgctaattttaaatttgatgccGACTGGCTACTCG
TTCGAACTATTTTCTACCGCTCGTATGTCCTCGTGTTTCAGAAAATTATC
ACAAAggtcaaaaattctgaaagagaTACGTTTCTTCCGACGTACAAACC
ACAAATTGGTTCCTAAGTTGGCGTTCTGTCGGCTGGTCAAAGAAATCGTG
TCCAGAATTCCAGGGATTGATGAGACCCTTCGTATACAAACATTGGCTTT
GGAAGCACTCCATGAAGCAGCGGAGAGCTTTTTGGTTCGATTTTTTGAGG
AATCTAATTTATGTGCTTTTCATAGCCGACGAGTTACTGTTATGCGGAAA
GATATGAAGTTTTTGAAAGTACTCAAATATAGGACTGGTTATCCTAAGCT
TATTTGAGGGATTGTGTCGGttgttttctttgtcttttgatAAAGTTGTT
GGAAATATATTTGTAAGTGGATTTGTCGTGTTTTTATCTTTGCTTAGTTT
TTTCCGTGGTTTGTTGAAAGAATTCGATATTTGGGAATCAATTAATTTCA
AACCTTCTTTAAGGTCAAATTTATTTTGTACTTTTCGTTTTTGTATTAAA
CTTTTACAAAATAGTTTTATATATTtcgcatttttttcaaaataatatta
TCACGATTAAAAACGAAAATTGATCTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050007-exon-scaffold_167-1491911889:1849753..1849866 | TCONS_00050007-exon-scaffold_167-1491911889:1849753..1849866 | Clytia hemisphaerica | exon |
| TCONS_00050007-exon-scaffold_167-1510915933:1849753..1849866 | TCONS_00050007-exon-scaffold_167-1510915933:1849753..1849866 | Clytia hemisphaerica | exon |
| TCONS_00050007-exon-scaffold_167-1575043694:1849753..1849866 | TCONS_00050007-exon-scaffold_167-1575043694:1849753..1849866 | Clytia hemisphaerica | exon |
| TCONS_00050007-exon-scaffold_167-1491911889:1850315..1850598 | TCONS_00050007-exon-scaffold_167-1491911889:1850315..1850598 | Clytia hemisphaerica | exon |
| TCONS_00050007-exon-scaffold_167-1510915933:1850315..1850598 | TCONS_00050007-exon-scaffold_167-1510915933:1850315..1850598 | Clytia hemisphaerica | exon |
| TCONS_00050007-exon-scaffold_167-1575043694:1850315..1850598 | TCONS_00050007-exon-scaffold_167-1575043694:1850315..1850598 | Clytia hemisphaerica | exon |
| TCONS_00050007-exon-scaffold_167-1491911889:1852421..1852550 | TCONS_00050007-exon-scaffold_167-1491911889:1852421..1852550 | Clytia hemisphaerica | exon |
| TCONS_00050007-exon-scaffold_167-1510915933:1852421..1852550 | TCONS_00050007-exon-scaffold_167-1510915933:1852421..1852550 | Clytia hemisphaerica | exon |
| TCONS_00050007-exon-scaffold_167-1575043694:1852421..1852550 | TCONS_00050007-exon-scaffold_167-1575043694:1852421..1852550 | Clytia hemisphaerica | exon |
| TCONS_00050007-exon-scaffold_167-1491911889:1853144..1853731 | TCONS_00050007-exon-scaffold_167-1491911889:1853144..1853731 | Clytia hemisphaerica | exon |
| TCONS_00050007-exon-scaffold_167-1510915933:1853144..1853731 | TCONS_00050007-exon-scaffold_167-1510915933:1853144..1853731 | Clytia hemisphaerica | exon |
| TCONS_00050007-exon-scaffold_167-1575043694:1853144..1853731 | TCONS_00050007-exon-scaffold_167-1575043694:1853144..1853731 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:1849753..1853731 + |
Blast
The following BLAST results are available for this feature:
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