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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050002 ID=TCONS_00050002|Name=TCONS_00050002|organism=Clytia hemisphaerica|type=transcript|length=1406bp
attataatacaccttttcgaccgtagccgccaattaccgcgcgggcattt
ttttgtccgcttcaTCCCAccaaaaccgtcccagtccttttttcgcacct
atagacaatagaaaaatgtgtcaaaaaagggttggatcgagtttaagggg
ataattaaataattaagtggcacgcgcctgaccgcgcgactacggtcgaa
aacgATAATTGATATATCTTTTCTGAAGGCTTTGCTACCACGTGGAGAAA
AAGACAATCCATTGCGTAATAAAATCTATCAAATCAATTACGGTATCGAA
CAGATTATATCAACCATTCCGAACACTCATTTAATCAATGCTGACCCTGG
GTTTGTTCGTTCAGATGGTGTCATCTTTCCTGAAGACATGGCTGACTATT
TACATTTAACACGCCGCGGGTATAAGAAGTTTTGTGTCCCCATCATGTCG
TGTGTGAAGAAGTTTCTGCAAGAAGATGCGAAAAAGGAAAAAGCTTTTAA
TAATAGTATTTATACTTTCCATGAGTGAAGATTTGTTGAACAGCTACttc
gataaattttttttaagcatGTATAAAATCGTAATTAGGNAATAATAGTA
TTTATACTTTCCATGAGTGAAGATTTGTTGAACAGCTACttcgataaatt
ttttttaagcatGTATAAAATCGTAATTAGGTTTTTAACAGTGGCTCTAT
CTCTAAAGATCTAATCTTTAAGCATTACAGAGTCTGGCAAGGGAAAGACA
CTTTAAAAAAACTGTATTTGGACTATGCAgcactgcaatgtcttccacgg
acccaatagctgattggttgaaagtgacgtaaaatcaatcaatactTCAC
Ttgtaaccaatcagctgttgggtccgtggaagacattgcaatggtgcata
tcatgaagaCGGACCAAGCTGCAAATGAGGTATTTTCGAGATTACTTCGA
CGAAATTTAGTAAACACTTTAATTGATACTTTGATGTCCTCGATTTCAGC
GTTTGCATTTTGTTGACCTCTAACAATCAAATCGATTTGGTATTTGATTT
TGCAATTTGTTCTGTTTGTTGGGAGCAGATGTATTTAATTCTGGTAGTCA
AATTGTTTTGGCATTTTTATATTAATCAAAACGaattttcttgaatttat
tagataaattttcattttactaaataactaaaaatgacaatataattttt
tgtaACTCTTCGttaatcattttttatttttacatgcaGTACATTAGAAT
ATTTCTTTAAAGTCTATTTATATCATCGATAATTCATCCATGAATTTTTA
gtatatctttttaattttacgtTATAAATTTCCTTCTAGAAGATGAACAT
TCAATAAATAGTTTGATAACATATATTTCCATTGCTCCAAttatttaatg
ttttct Run BLAST on NCBI transcript from alignment at scaffold_167:1837540..1838945+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050002 ID=TCONS_00050002|Name=TCONS_00050002|organism=Clytia hemisphaerica|type=transcript|length=1406bp|location=Sequence derived from alignment at scaffold_167:1837540..1838945+ (Clytia hemisphaerica)
attataatacaccttttcgaccgtagccgccaattaccgcgcgggcattt
ttttgtccgcttcaTCCCAccaaaaccgtcccagtccttttttcgcacct
atagacaatagaaaaatgtgtcaaaaaagggttggatcgagtttaagggg
ataattaaataattaagtggcacgcgcctgaccgcgcgactacggtcgaa
aacgATAATTGATATATCTTTTCTGAAGGCTTTGCTACCACGTGGAGAAA
AAGACAATCCATTGCGTAATAAAATCTATCAAATCAATTACGGTATCGAA
CAGATTATATCAACCATTCCGAACACTCATTTAATCAATGCTGACCCTGG
GTTTGTTCGTTCAGATGGTGTCATCTTTCCTGAAGACATGGCTGACTATT
TACATTTAACACGCCGCGGGTATAAGAAGTTTTGTGTCCCCATCATGTCG
TGTGTGAAGAAGTTTCTGCAAGAAGATGCGAAAAAGGAAAAAGCTTTTAA
TAATAGTATTTATACTTTCCATGAGTGAAGATTTGTTGAACAGCTACttc
gataaattttttttaagcatGTATAAAATCGTAATTAGGNAATAATAGTA
TTTATACTTTCCATGAGTGAAGATTTGTTGAACAGCTACttcgataaatt
ttttttaagcatGTATAAAATCGTAATTAGGTTTTTAACAGTGGCTCTAT
CTCTAAAGATCTAATCTTTAAGCATTACAGAGTCTGGCAAGGGAAAGACA
CTTTAAAAAAACTGTATTTGGACTATGCAgcactgcaatgtcttccacgg
acccaatagctgattggttgaaagtgacgtaaaatcaatcaatactTCAC
Ttgtaaccaatcagctgttgggtccgtggaagacattgcaatggtgcata
tcatgaagaCGGACCAAGCTGCAAATGAGGTATTTTCGAGATTACTTCGA
CGAAATTTAGTAAACACTTTAATTGATACTTTGATGTCCTCGATTTCAGC
GTTTGCATTTTGTTGACCTCTAACAATCAAATCGATTTGGTATTTGATTT
TGCAATTTGTTCTGTTTGTTGGGAGCAGATGTATTTAATTCTGGTAGTCA
AATTGTTTTGGCATTTTTATATTAATCAAAACGaattttcttgaatttat
tagataaattttcattttactaaataactaaaaatgacaatataattttt
tgtaACTCTTCGttaatcattttttatttttacatgcaGTACATTAGAAT
ATTTCTTTAAAGTCTATTTATATCATCGATAATTCATCCATGAATTTTTA
gtatatctttttaattttacgtTATAAATTTCCTTCTAGAAGATGAACAT
TCAATAAATAGTTTGATAACATATATTTCCATTGCTCCAAttatttaatg
ttttct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050002-exon-scaffold_167-1491911889:1837540..1838945 | TCONS_00050002-exon-scaffold_167-1491911889:1837540..1838945 | Clytia hemisphaerica | exon |
| TCONS_00050002-exon-scaffold_167-1510915933:1837540..1838945 | TCONS_00050002-exon-scaffold_167-1510915933:1837540..1838945 | Clytia hemisphaerica | exon |
| TCONS_00050002-exon-scaffold_167-1575043694:1837540..1838945 | TCONS_00050002-exon-scaffold_167-1575043694:1837540..1838945 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:1837540..1838945 + |
Blast
BLAST of TCONS_00050002 vs. Swiss-Prot (Human)
Match: PA1B2 (Platelet-activating factor acetylhydrolase IB subunit beta OS=Homo sapiens GN=PAFAH1B2 PE=1 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 1.982e-16 Identity = 37/89 (41.57%), Postives = 54/89 (60.67%), Query Frame = 1
Query: 229 ALLPRGEKDNPLRNKIYQINYGIEQIISTIPNTHLINADPGFVRSDGVIFPEDMADYLHLTRRGYKKFCVPIMSCVKKFLQEDAKKEKA 495
LLPRGEK NPLR K ++N ++ + + N L++ D GFV SDG I DM D+LHLT GY K C P+ + + L+E ++++
Sbjct: 138 GLLPRGEKPNPLRQKNAKVNQLLKVSLPKLANVQLLDTDGGFVHSDGAISCHDMFDFLHLTGGGYAKICKPLHELIMQLLEETPEEKQT 226
The following BLAST results are available for this feature:
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