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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049972 ID=TCONS_00049972|Name=TCONS_00049972|organism=Clytia hemisphaerica|type=transcript|length=2048bpRun BLAST on NCBI protein sequence of TCONS_00049972-protein >TCONS_00049972-protein ID=TCONS_00049972-protein|Name=TCONS_00049972-protein|organism=Clytia hemisphaerica|type=polypeptide|length=368bp MKLTIGIIFFALYTVNAVDLKMCERQHGGLGNWMDWGPCKNKMGYECRHRRun BLAST on NCBI transcript from alignment at scaffold_167:1538981..1542679+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00049972 ID=TCONS_00049972|Name=TCONS_00049972|organism=Clytia hemisphaerica|type=transcript|length=3699bp|location=Sequence derived from alignment at scaffold_167:1538981..1542679+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_167:1538981..1542679+ >TCONS_00049972 ID=TCONS_00049972|Name=TCONS_00049972|organism=Clytia hemisphaerica|type=CDS|length=6642bp|location=Sequence derived from alignment at scaffold_167:1538981..1542679+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00049972 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 134.806 bits (338), Expect = 2.675e-32 Identity = 77/216 (35.65%), Postives = 101/216 (46.76%), Query Frame = 3
Query: 654 HGGLGNWMDWGPCKNK--MGYECRHRYCDSPVPKYGGYPCSGETTQYRKIEK----VDGGYGPWMKWGACKEV---GYQCRFRFCDSPKPMYGGSPCEGDMMEKRMTP----AVNGGFGKWMAWGPCSKTCGEGGVQTRHRFCNYPNPMYGGMDCDAKDSMETRACPAMYMEACPPPGVLGTKGTYGKCSRGC-GGQRQVTYPCNMPEVYSADAKC 1259
HGG W W C G + R R C+ P+P GG PC G + R + VDG + W W C G Q R R C++P +GG PCEG+ +E M V+G + W WG CS++CG+G QTR R CN P P +GG CD ++ + + C CP G T ++ CS C GG RQ T C+ P KC
Sbjct: 4529 HGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKG-TQTRARLCNNPPPAFGGSYCDGAET-QMQVCNE---RNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKC 4739 HSP 2 Score: 124.02 bits (310), Expect = 8.405e-29 Identity = 77/248 (31.05%), Postives = 108/248 (43.55%), Query Frame = 3
Query: 621 NAVDLKMCERQ----HGGLGNWMDWGPCKNK--MGYECRHRYCDSPVPKYGGYPCSGETTQYRKIEK----VDGGYGPWMKWGACKEV---GYQCRFRFCDSPKPMYGGSPCEGDMMEKRMTPA----VNGGFGKWMAWGPCSKTCGEGGVQTRHRFCNYPNPMYGGMDCDAKDSMETRACPAMYMEACPPPGVLGTKGTYGKCSRGC-GGQRQVTYPCNMPEVYSADAKCYMGCSNTMQYEKCKCES 1310
NAV++ MC + HG W WG C G + R R C++P P +GG C G TQ + + + G + W W AC G + R R C P P YGG CEG ++ + +G + W WG CS+TC GG R+R C+ P P GG C DS R M CP G G+ ++ +CS C GG++ C+ P C +T Q +C ++
Sbjct: 4628 NAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTC-NGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDM----CPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPC---PGDTTQVTRCNVQA 4867 HSP 3 Score: 111.694 bits (278), Expect = 5.778e-25 Identity = 64/173 (36.99%), Postives = 78/173 (45.09%), Query Frame = 3
Query: 654 HGGLGNWMDWGPCKNKMGYECRHRY--CDSPVPKYGGYPCSGETTQYRKIEK----VDGGYGPWMKWGACKEV---GYQCRFRFCDSPKPMYGGSPCEG-DMMEKR----MTPAVNGGFGKWMAWGPCSKTCGEGGVQTRHRFCNYPNPMYGGMDCDAKDSMETR----ACPA 1118
HG W W C G R R C PVP+YGG C G Q G + PW WG C G R+R CD+P P GG C G D +R M P V+G +G W +W CS +CG GG +TR R C++P P+ GG C + TR ACP
Sbjct: 4700 HGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCP-VDGSWGSWHSWSQCSASCG-GGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACPG 4870 HSP 4 Score: 93.9745 bits (232), Expect = 1.487e-19 Identity = 54/154 (35.06%), Postives = 74/154 (48.05%), Query Frame = 3
Query: 795 IEKVDGGYGPWMKWGACKEV---GYQCRFRFCDSPKPMYGGSPCEGDMMEKRMTP----AVNGGFGKWMAWGPCSKTCGEGGVQTRHRFCNYPNPMYGGMDCDAKDSMETRACPAMYMEACPPPGVLGTKGTYGKCSRGCG-GQRQVTYPCNMP 1232
I +V GG+ W W AC G Q R R C+ P P GG PC+G +E R V+G + +W W C+++CG G QTR R CN P+ +GG C+ +++E C + CP G +G CS CG G + CN P
Sbjct: 4525 IVQVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGN-QTRTRTCNNPSVQHGGRPCEG-NAVEIIMCN---IRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNP 4673 The following BLAST results are available for this feature:
BLAST of TCONS_00049972 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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