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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049967 ID=TCONS_00049967|Name=TCONS_00049967|organism=Clytia hemisphaerica|type=transcript|length=3045bpRun BLAST on NCBI protein sequence of TCONS_00049967-protein >TCONS_00049967-protein ID=TCONS_00049967-protein|Name=TCONS_00049967-protein|organism=Clytia hemisphaerica|type=polypeptide|length=814bp MAAESEALKLPKPIPVATELLNFTGDRRLDFLGFVRPDEVQDIKAYNVDKRun BLAST on NCBI transcript from alignment at scaffold_167:1492247..1506824+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00049967 ID=TCONS_00049967|Name=TCONS_00049967|organism=Clytia hemisphaerica|type=transcript|length=14578bp|location=Sequence derived from alignment at scaffold_167:1492247..1506824+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_167:1492247..1506824+ >TCONS_00049967 ID=TCONS_00049967|Name=TCONS_00049967|organism=Clytia hemisphaerica|type=CDS|length=14670bp|location=Sequence derived from alignment at scaffold_167:1492247..1506824+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00049967 vs. Swiss-Prot (Human)
Match: ZN778 (Zinc finger protein 778 OS=Homo sapiens GN=ZNF778 PE=1 SV=3) HSP 1 Score: 156.762 bits (395), Expect = 3.050e-39 Identity = 99/293 (33.79%), Postives = 144/293 (49.15%), Query Frame = 1
Query: 1261 CMVCDKSLTSLQNLMKHLLTHNNN--HTCQICMKTFKNMHFLKHHMDKHKTSYEYSCPICHKMFKFKNNMRCHLRKHTAEKKFECEICHKKFMGPYNLREHMKTHSTDRPYECELCLKRYKDSGALNKHLMTH-QEKKVSCEICNRSFSNTTQLNRHMRFHLSWPGDXXXXXXXXXXXXXFQCKDCDKSFKHYSNLSAHIKKAHRELKNECTVCEKRFAFKYELKQHMFIHQEGVEKQSKFKCQYCNKYFQRSTTLKTHEQNTHLGVKRFKCEVCGKEFGTKFNMQVHVEKIH 2130
C C K+ T L +H+ TH +TC+ C K F L H+ H Y C C K F +++ H R HT EK +EC+ C K F G L +HM+TH+ ++PYEC+ C K Y LN+H+ TH +EK C +C +SF N++ LN+H++ H + ++CKDC K+F S+L+ HI+ E EC VC K F H+ +H + + C+ C K F S+ L H + TH G K + C CGK F ++ H +IH
Sbjct: 395 CSYCGKAFTVRCGLTRHVRTHTGEKPYTCKDCGKAFCTSSGLTEHVRTHTGEKPYECKDCGKSFTVSSSLTEHARIHTGEKPYECKQCGKAFTGRSGLTKHMRTHTGEKPYECKDCGKAYNRVYLLNEHVKTHTEEKPFICTVCRKSFRNSSCLNKHIQIHTG--------------IKPYECKDCGKTFTVSSSLTEHIRTHTGEKPYECKVCGKAFT----TSSHLIVHIRTHTGEKPYICKECGKAFASSSHLIEHRR-THTGEKPYICNECGKAFRASSHLHKH-GRIH 667 HSP 2 Score: 150.599 bits (379), Expect = 2.765e-37 Identity = 97/305 (31.80%), Postives = 150/305 (49.18%), Query Frame = 1
Query: 1213 GISSTTKKQTSSANLKCMVCDKSLTSLQNLMKHLLTHNNN--HTCQICMKTFKNMHFLKHHMDKHKTSYEYSCPICHKMFKFKNNMRCHLRKHTAEKKFECEICHKKFMGPYNLREHMKTHSTDRPYECELCLKRYKDSGALNKHLMTH-QEKKVSCEICNRSFSNTTQLNRHMRFHLSWPGDXXXXXXXXXXXXXFQCKDCDKSFKHYSNLSAHIKKAHRELKNECTVCEKRFAFKYELKQHMFIHQEGVEKQSKFKCQYCNKYFQRSTTLKTHEQNTHLGVKRFKCEVCGKEFGTKFNMQVHV 2118
G+S + +C C K+ L +H TH C +C K F+N L +H+ H Y+C C K F + + H+R HT EK + C+ C K F L EH++TH+ ++PYEC+ C K + S +L +H H EK C+ C ++F+ + L +HMR H + ++CKDC K++ L+ H+K E CTVC K F L +H+ IH G++ ++C+ C K F S++L H + TH G K ++C+VCGK F T ++ VH+
Sbjct: 323 GLSKHVQTDPGQKPYECKDCGKACGGFYLLNEHGKTHTREKPFACVVCGKYFRNSSCLNNHVRIHTGIKPYTCSYCGKAFTVRCGLTRHVRTHTGEKPYTCKDCGKAFCTSSGLTEHVRTHTGEKPYECKDCGKSFTVSSSLTEHARIHTGEKPYECKQCGKAFTGRSGLTKHMRTHTG--------------EKPYECKDCGKAYNRVYLLNEHVKTHTEEKPFICTVCRKSFRNSSCLNKHIQIHT-GIK---PYECKDCGKTFTVSSSLTEHIR-THTGEKPYECKVCGKAFTTSSHLIVHI 608 HSP 3 Score: 124.405 bits (311), Expect = 6.317e-29 Identity = 80/283 (28.27%), Postives = 135/283 (47.70%), Query Frame = 1
Query: 1195 SVIPSDGISSTTKKQTSSANLKCMVCDKSLTSLQNLMKHLLTHNNN--HTCQICMKTFKNMHFLKHHMDKHKTSYEYSCPICHKMFKFKNNMRCHLRKHTAEKKFECEICHKKFMGPYNLREHMKTHSTDRPYECELCLKRYKDSGALNKHLMTH-QEKKVSCEICNRSFSNTTQLNRHMRFHLSWPGDXXXXXXXXXXXXXFQCKDCDKSFKHYSNLSAHIKKAHRELKNECTVCEKRFAFKYELKQHMFIHQEGVEKQSKFKCQYCNKYFQRSTTLKTHEQ 2034
S S ++ + T +C C K+ T L KH+ TH + C+ C K + ++ L H+ H + C +C K F+ + + H++ HT K +EC+ C K F +L EH++TH+ ++PYEC++C K + S L H+ TH EK C+ C ++F++++ L H R H + + C +C K+F+ S+L H + + +C C K + Y LK+H+ + E + F C+ C K F+ S+ L H Q
Sbjct: 457 SFTVSSSLTEHARIHTGEKPYECKQCGKAFTGRSGLTKHMRTHTGEKPYECKDCGKAYNRVYLLNEHVKTHTEEKPFICTVCRKSFRNSSCLNKHIQIHTGIKPYECKDCGKTFTVSSSLTEHIRTHTGEKPYECKVCGKAFTTSSHLIVHIRTHTGEKPYICKECGKAFASSSHLIEHRRTHTG--------------EKPYICNECGKAFRASSHLHKHGRIHTGQKPYKCKECGKAYNRFYLLKEHLKTYTE----EQVFVCKDCGKSFKNSSCLNHHTQ 721 HSP 4 Score: 119.783 bits (299), Expect = 1.712e-27 Identity = 82/290 (28.28%), Postives = 127/290 (43.79%), Query Frame = 1
Query: 1261 CMVCDKSLTSLQNLMKHLLTHNNNHTCQI--CMKTFKNMHFLKHHMDKHKTSYEYSCPICHKMFKFKNNMRCHLRKHTAEKKFECEICHKKFMGPYNLREHMKTHSTDRPYECELCLKRYKDSGALNKHLMTHQE-KKVSCEICNRSFSNTTQLNRHMRFHLSWPGDXXXXXXXXXXXXXFQCKDCDKSFKHYSNLSAHIKKAHRELKNECTVCEKRFAFKYELKQHMFIHQEGVEKQSKFKCQYCNKYFQRSTTLKTHEQNTHLGVKRFKCEVCGKEFGTKFNMQVHVE 2121
C C K+ L + H C++ C K L H+ H C C K F + + H++ +K +EC+ C K G Y L EH KTH+ ++P+ C +C K +++S LN H+ H K +C C ++F+ L RH+R H + + CKDC K+F S L+ H++ E EC C K F L +H IH + ++C+ C K F + L H TH G K ++C+ CGK + + + HV+
Sbjct: 255 CRECGKAFRYTAYLTGRVQVHPGEKPCELEECGKASPVSSSLTQHVRIHAAEKPCECKECGKAFTGLSGLSKHVQTDPGQKPYECKDCGKACGGFYLLNEHGKTHTREKPFACVVCGKYFRNSSCLNNHVRIHTGIKPYTCSYCGKAFTVRCGLTRHVRTHTG--------------EKPYTCKDCGKAFCTSSGLTEHVRTHTGEKPYECKDCGKSFTVSSSLTEHARIHT----GEKPYECKQCGKAFTGRSGLTKH-MRTHTGEKPYECKDCGKAYNRVYLLNEHVK 525 HSP 5 Score: 112.849 bits (281), Expect = 2.044e-25 Identity = 72/249 (28.92%), Postives = 115/249 (46.18%), Query Frame = 1
Query: 1213 GISSTTKKQTSSANLKCMVCDKSLTSLQNLMKHLLTHNNN--HTCQICMKTFKNMHFLKHHMDKHKTSYEYSCPICHKMFKFKNNMRCHLRKHTAEKKFECEICHKKFMGPYNLREHMKTHSTDRPYECELCLKRYKDSGALNKHLMTH-QEKKVSCEICNRSFSNTTQLNRHMRFHLSWPGDXXXXXXXXXXXXXFQCKDCDKSFKHYSNLSAHIKKAHRELKNECTVCEKRFAFKYELKQHMFIHQE 1950
G++ + T +C C K+ + L +H+ TH C +C K+F+N L H+ H Y C C K F +++ H+R HT EK +EC++C K F +L H++TH+ ++PY C+ C K + S L +H TH EK C C ++F ++ L++H R H + ++CK+C K++ + L H+K E C C K F L H IH +
Sbjct: 491 GLTKHMRTHTGEKPYECKDCGKAYNRVYLLNEHVKTHTEEKPFICTVCRKSFRNSSCLNKHIQIHTGIKPYECKDCGKTFTVSSSLTEHIRTHTGEKPYECKVCGKAFTTSSHLIVHIRTHTGEKPYICKECGKAFASSSHLIEHRRTHTGEKPYICNECGKAFRASSHLHKHGRIHTG--------------QKPYKCKECGKAYNRFYLLKEHLKTYTEEQVFVCKDCGKSFKNSSCLNHHTQIHTD 725 HSP 6 Score: 111.694 bits (278), Expect = 5.825e-25 Identity = 82/287 (28.57%), Postives = 123/287 (42.86%), Query Frame = 1
Query: 1270 CDKSLTSLQNLMKHLLTHNNNHTCQI--CMKTFKNMHFLKHHMDKHKTSYEYSCPICHKMFKFKNNMRCHLRKHTAEKKFECEICHKKFMGPYNLREHMKTHSTDRPYECELCLKRYKDSGALNKHLMTH-QEKKVSCEICNRSFSNTTQLNRHMRFHLSWPGDXXXXXXXXXXXXXFQCKDCDKSFKHYSNLSAHIKKAHRELKNECTVCEKRFAFKYELKQHMFIHQEGVEKQSKFKCQYCNKYFQRSTTLKTHEQNTHLGVKRFKCEVCGKEFGTKFNMQVHVE 2121
C K+ +L +H+ H C+ C K F + L H+ Y C C K + H + HT EK F C +C K F L H++ H+ +PY C C K + L +H+ TH EK +C+ C ++F ++ L H+R H + ++CKDC KSF S+L+ H + E EC C K F + L +HM H + ++C+ C K + R L H + TH K F C VC K F + H++
Sbjct: 286 CGKASPVSSSLTQHVRIHAAEKPCECKECGKAFTGLSGLSKHVQTDPGQKPYECKDCGKACGGFYLLNEHGKTHTREKPFACVVCGKYFRNSSCLNNHVRIHTGIKPYTCSYCGKAFTVRCGLTRHVRTHTGEKPYTCKDCGKAFCTSSGLTEHVRTHTG--------------EKPYECKDCGKSFTVSSSLTEHARIHTGEKPYECKQCGKAFTGRSGLTKHMRTHT----GEKPYECKDCGKAYNRVYLLNEHVK-THTEEKPFICTVCRKSFRNSSCLNKHIQ 553 HSP 7 Score: 87.0409 bits (214), Expect = 2.412e-17 Identity = 76/285 (26.67%), Postives = 119/285 (41.75%), Query Frame = 1
Query: 1270 CDKSLTSLQNLM-KHLLTHNNNHTCQICMKTFKNMHFLKHHMDKHKTSYEYSCPICHKMFKFKNNMRCHLRKHTAEKKFECEICHKKFMGPYNLREHMKTHSTDRPYECELCLKRYKDSGALNKHLMTH-QEKKVSCEICNRSFSNTTQLNRHMRFHLSWPGDXXXXXXXXXXXXXFQCKDCDKSFKHYSNLSAHIKKAHRELKNECTVCEKRFAFKYELKQHMFIHQEGVEKQSKFKCQYCNKYFQRSTTLKTHEQNTHLGVKRFKCEVCGKEFGTKFNMQVHV 2118
C K+ +S N++ + T + + C + F N +L+ H + C K + H C C K F L ++ H ++P E E C K S +L +H+ H EK C+ C ++F+ + L++H++ + PG + ++CKDC K+ + L+ H K RE C VC K F L H+ IH G++ + C YC K F L H + TH G K + C+ CGK F T + HV
Sbjct: 175 CGKAFSSTPNVVSQQACTRDRSLDYSSCGEVFLNQSYLQARAGSHNGEETWKWKPCGKALTHSMGCATPVEMHAVRNPHVCRECGKAFRYTAYLTGRVQVHPGEKPCELEECGKASPVSSSLTQHVRIHAAEKPCECKECGKAFTGLSGLSKHVQ---TDPGQ-----------KPYECKDCGKACGGFYLLNEHGKTHTREKPFACVVCGKYFRNSSCLNNHVRIHT-GIK---PYTCSYCGKAFTVRCGLTRHVR-THTGEKPYTCKDCGKAFCTSSGLTEHV 440 HSP 8 Score: 83.1889 bits (204), Expect = 4.246e-16 Identity = 47/155 (30.32%), Postives = 80/155 (51.61%), Query Frame = 1
Query: 1207 SDGISSTTKKQTSSANLKCMVCDKSLTSLQNLMKHLLTHNNN--HTCQICMKTFKNMHFLKHHMDKHKTSYEYSCPICHKMFKFKNNMRCHLRKHTAEKKFECEICHKKFMGPYNLREHMKTHSTDRPYECELCLKRYKDSGALNKHLMTHQEKK 1665
S ++ + T +C VC K+ T+ +L+ H+ TH + C+ C K F + L H H Y C C K F+ +++ H R HT +K ++C+ C K + Y L+EH+KT++ ++ + C+ C K +K+S LN H H ++K
Sbjct: 573 SSSLTEHIRTHTGEKPYECKVCGKAFTTSSHLIVHIRTHTGEKPYICKECGKAFASSSHLIEHRRTHTGEKPYICNECGKAFRASSHLHKHGRIHTGQKPYKCKECGKAYNRFYLLKEHLKTYTEEQVFVCKDCGKSFKNSSCLNHHTQIHTDEK 727 The following BLAST results are available for this feature:
BLAST of TCONS_00049967 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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